BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58784.1
Length=921
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950597 jgi|Araly1|950597|scaffold_802484.1 1103 0.0
> Ahg950597 jgi|Araly1|950597|scaffold_802484.1
Length=779
Score = 1103 bits (597), Expect = 0.0
Identities = 696/743 (94%), Gaps = 9/743 (1%)
Strand=Plus/Plus
Query 185 CAATGGGAGAGAAACAGAAACGAGGGAG-AA-A-TATAATGCCAAAGCATGTGGCGGTTA 241
|||||||||||||| ||||||||| ||| || | | |||||||||||||||||| ||||
Sbjct 20 CAATGGGAGAGAAAGAGAAACGAGCGAGCAATAGAAAAATGCCAAAGCATGTGGCCGTTA 79
Query 242 TATTGGACGGAAACAGACGTTGGGCTGAAAAACGAGGACTCGGGACATCGGAAGGCCACG 301
||||||||||||||||||||||||| || ||||||||||| || ||||| ||||||||||
Sbjct 80 TATTGGACGGAAACAGACGTTGGGCAGAGAAACGAGGACTTGGTACATCCGAAGGCCACG 139
Query 302 AGGCCGGAGCGAGAAGGCTCA-TGGAGAATGCTAAGGATTGTTTCGCTATGGGGACAAAC 360
|||||||||| |||||||| | ||||||||||||||||||||||||| |||||||||||
Sbjct 140 AGGCCGGAGCTAGAAGGCT-ATTGGAGAATGCTAAGGATTGTTTCGCAATGGGGACAAAT 198
Query 361 ACTATCTCACTCTTTGCTTTCTCCACCGAAAATTGGGAAAGACCAGAGGATGAAGTTAAG 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 199 ACTATCTCACTCTTTGCTTTCTCCACCGAAAATTGGGAAAGACCAGAGGATGAAGTTAAC 258
Query 421 TGCTTGATGGCCTTGTTTGAGAAATACTT-AGCGTCTGATATGCCTTACCTCCGAAGTGA 479
|||||||||||||||||||||||| |||| || |||||| ||||||| | ||| ||| ||
Sbjct 259 TGCTTGATGGCCTTGTTTGAGAAACACTTTAG-GTCTGAGATGCCTTTCTTCCAAAGAGA 317
Query 480 TAAGATCAAGATCTCGGTTATCGGGAACCGTACAAAACTCCCCGAGTCGCTTCTAGGTTT 539
|||||||||||||| ||||||||||||||| ||||| |||| |||||||||| ||||||
Sbjct 318 TAAGATCAAGATCTTAGTTATCGGGAACCGTGCAAAAATCCCTGAGTCGCTTCGAGGTTT 377
Query 540 GATAGAAGAGGTAGAGGAAGCTACAAAGAGTTACGAAGGGAAGAATCTCATTATAGCAAT 599
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 378 GATAGAAGAGGTAGAGGAAGCTACAAAGAGCTACGAAGGGAAGAATCTCATTATAGCAAT 437
Query 600 AGACTATAGTGGAAGATATGATATCTTACAAGCATGCAAAAGTCTTGCAA-ATAAAGTGA 658
||||||||||||||||| ||| |||||||||||||||||||||||||||| | |||||||
Sbjct 438 AGACTATAGTGGAAGATTTGACATCTTACAAGCATGCAAAAGTCTTGCAACA-AAAGTGA 496
Query 659 AAGACGGGCTGATTCAAGTGGAGGACATTAACGAGAAGGCGATGGAGAAAGAGTTGTTGA 718
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 497 AAGACGGGCTGATTCAAGTGGAGGACATCAACGAGGAGGCGATGGAGAAAGAGTTGTTGA 556
Query 719 CAAAGTGTAGCGAATTCCCAAACCCTGACCTGTTGATCAGAACAAGCGGAGAGCAAAGGA 778
|||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 557 CAAAATGTAGCGAATACCCAAACCCTGACCTGTTGATCAGAACAAGTGGAGAGCAAAGGA 616
Query 779 TCAGTAACTTCTTTTTATGGCAATCTGCTTACACTGAGCTTTACTTTCCAACTGTTTTGT 838
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 617 TCAGTAACTTCTTCTTATGGCAATCTGCTTACACTGAGCTTTACTTTCCTACTGTTTTGT 676
Query 839 GGCCTGATTTTGGCGAAGCTGAGTATCTTGAGGCCTTGACTTGGTATCAGCAAAGGCAGA 898
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 677 GGCCTGATTTTGGTGAAGCTGAGTATCTTGAGGCCTTGACTTGGTATCAACAAAGGCAGA 736
Query 899 GGCGATTCGGTCGACGAGTTTAA 921
|||||||||||||||||||||||
Sbjct 737 GGCGATTCGGTCGACGAGTTTAA 759
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34158133632
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5