BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G58784.1 Length=921 Score E Sequences producing significant alignments: (Bits) Value Ahg950597 jgi|Araly1|950597|scaffold_802484.1 1103 0.0 > Ahg950597 jgi|Araly1|950597|scaffold_802484.1 Length=779 Score = 1103 bits (597), Expect = 0.0 Identities = 696/743 (94%), Gaps = 9/743 (1%) Strand=Plus/Plus Query 185 CAATGGGAGAGAAACAGAAACGAGGGAG-AA-A-TATAATGCCAAAGCATGTGGCGGTTA 241 |||||||||||||| ||||||||| ||| || | | |||||||||||||||||| |||| Sbjct 20 CAATGGGAGAGAAAGAGAAACGAGCGAGCAATAGAAAAATGCCAAAGCATGTGGCCGTTA 79 Query 242 TATTGGACGGAAACAGACGTTGGGCTGAAAAACGAGGACTCGGGACATCGGAAGGCCACG 301 ||||||||||||||||||||||||| || ||||||||||| || ||||| |||||||||| Sbjct 80 TATTGGACGGAAACAGACGTTGGGCAGAGAAACGAGGACTTGGTACATCCGAAGGCCACG 139 Query 302 AGGCCGGAGCGAGAAGGCTCA-TGGAGAATGCTAAGGATTGTTTCGCTATGGGGACAAAC 360 |||||||||| |||||||| | ||||||||||||||||||||||||| ||||||||||| Sbjct 140 AGGCCGGAGCTAGAAGGCT-ATTGGAGAATGCTAAGGATTGTTTCGCAATGGGGACAAAT 198 Query 361 ACTATCTCACTCTTTGCTTTCTCCACCGAAAATTGGGAAAGACCAGAGGATGAAGTTAAG 420 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 199 ACTATCTCACTCTTTGCTTTCTCCACCGAAAATTGGGAAAGACCAGAGGATGAAGTTAAC 258 Query 421 TGCTTGATGGCCTTGTTTGAGAAATACTT-AGCGTCTGATATGCCTTACCTCCGAAGTGA 479 |||||||||||||||||||||||| |||| || |||||| ||||||| | ||| ||| || Sbjct 259 TGCTTGATGGCCTTGTTTGAGAAACACTTTAG-GTCTGAGATGCCTTTCTTCCAAAGAGA 317 Query 480 TAAGATCAAGATCTCGGTTATCGGGAACCGTACAAAACTCCCCGAGTCGCTTCTAGGTTT 539 |||||||||||||| ||||||||||||||| ||||| |||| |||||||||| |||||| Sbjct 318 TAAGATCAAGATCTTAGTTATCGGGAACCGTGCAAAAATCCCTGAGTCGCTTCGAGGTTT 377 Query 540 GATAGAAGAGGTAGAGGAAGCTACAAAGAGTTACGAAGGGAAGAATCTCATTATAGCAAT 599 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 378 GATAGAAGAGGTAGAGGAAGCTACAAAGAGCTACGAAGGGAAGAATCTCATTATAGCAAT 437 Query 600 AGACTATAGTGGAAGATATGATATCTTACAAGCATGCAAAAGTCTTGCAA-ATAAAGTGA 658 ||||||||||||||||| ||| |||||||||||||||||||||||||||| | ||||||| Sbjct 438 AGACTATAGTGGAAGATTTGACATCTTACAAGCATGCAAAAGTCTTGCAACA-AAAGTGA 496 Query 659 AAGACGGGCTGATTCAAGTGGAGGACATTAACGAGAAGGCGATGGAGAAAGAGTTGTTGA 718 |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| Sbjct 497 AAGACGGGCTGATTCAAGTGGAGGACATCAACGAGGAGGCGATGGAGAAAGAGTTGTTGA 556 Query 719 CAAAGTGTAGCGAATTCCCAAACCCTGACCTGTTGATCAGAACAAGCGGAGAGCAAAGGA 778 |||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||| Sbjct 557 CAAAATGTAGCGAATACCCAAACCCTGACCTGTTGATCAGAACAAGTGGAGAGCAAAGGA 616 Query 779 TCAGTAACTTCTTTTTATGGCAATCTGCTTACACTGAGCTTTACTTTCCAACTGTTTTGT 838 ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 617 TCAGTAACTTCTTCTTATGGCAATCTGCTTACACTGAGCTTTACTTTCCTACTGTTTTGT 676 Query 839 GGCCTGATTTTGGCGAAGCTGAGTATCTTGAGGCCTTGACTTGGTATCAGCAAAGGCAGA 898 ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 677 GGCCTGATTTTGGTGAAGCTGAGTATCTTGAGGCCTTGACTTGGTATCAACAAAGGCAGA 736 Query 899 GGCGATTCGGTCGACGAGTTTAA 921 ||||||||||||||||||||||| Sbjct 737 GGCGATTCGGTCGACGAGTTTAA 759 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34158133632 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5