BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G58790.2

Length=819
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg358097 jgi|Araly1|358097|fgenesh1_pg.C_scaffold_8001884           664    0.0  


> Ahg358097 jgi|Araly1|358097|fgenesh1_pg.C_scaffold_8001884
Length=522

 Score =  664 bits (359),  Expect = 0.0
 Identities = 473/524 (90%), Gaps = 24/524 (5%)
 Strand=Plus/Plus

Query  113  ATGAATCCGTTGACAA-GGTGAAGAAGACGCAGAGCATTAACGCGAAAGAATTAGATCTA  171
            |||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||
Sbjct  1    ATGAATCCGTTGACAATGGTGAAGAAGACACAGAGAATTAACGCGAAAGAATTAGATCTA  60

Query  172  GGGATTTACGACGAAGCATCTTGGCACGCCAAGTACAAAGATTCAGCCTACGTTTACGTC  231
            ||||| | ||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct  61   GGGATCTCCGACGAAGCATCTTGGCACGCTAAATACAAAGATTCAGCCTACGTTTACGTC  120

Query  232  GGAGAATTACCT-TACGATCTCACGGAGGGTGACCTCCTCGCCGTTTTCTCACAATATGG  290
            |||||||||| | |||||| | ||||||||||||||||||||||||||| ||||||||||
Sbjct  121  GGAGAATTAC-TGTACGATTTAACGGAGGGTGACCTCCTCGCCGTTTTCGCACAATATGG  179

Query  291  TGAAGTTGTTGATTTGAATCTTGTTCGAGATAAAGGAACTGGGAGATCAAAAAGATTTGC  350
            ||||||||||||| ||||||||| |||||||||||||||||||| ||||||| |||||||
Sbjct  180  TGAAGTTGTTGATGTGAATCTTGCTCGAGATAAAGGAACTGGGAAATCAAAAGGATTTGC  239

Query  351  GTTTGTTGCTTATGAAGATCAGAGAAGTACTAATCTTGCTGTTG-------G--TG----  397
            |||||||||||||||||||||||||||||| |||||||||||||       |  ||    
Sbjct  240  GTTTGTTGCTTATGAAGATCAGAGAAGTACAAATCTTGCTGTTGATAATCTGAATGGAGC  299

Query  398  T----T---GGGAAGGATAATAAAAGTGGAGCATTGTGGTAAATACTTAaagagagaaga  450
            |    |   |||||| || |||||||||||||||||||||||||||| ||||||||||||
Sbjct  300  TAAGGTTTTGGGAAGAATCATAAAAGTGGAGCATTGTGGTAAATACTCAAAGAGAGAAGA  359

Query  451  ggaagatgaagagacgaagcagaagaagagagaagCTCCGTGGTGTTTGCAGAGCTTTTC  510
            ||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct  360  GGATGATGAAGAGACGAAGCATAAGAAGAGAGAAGCTC-GTGGTGTTTGCAGAGCTTTTC  418

Query  511  AGAGAAAGGAGTGTACTCGTGGAGATTCTTGCAAATTTTCTCACGATGAAAATAGAGCTG  570
            |||||||||| |||||||||||||||  |||||||||||||||||||||||| |||| ||
Sbjct  419  AGAGAAAGGAATGTACTCGTGGAGATGGTTGCAAATTTTCTCACGATGAAAACAGAGGTG  478

Query  571  CCAATACCGGGTGGGGTCACGAAGATCGTAGAAGTTCCAAGTGA  614
            |||||||||| |||||||||||||| ||||||||||||| ||||
Sbjct  479  CCAATACCGGCTGGGGTCACGAAGACCGTAGAAGTTCCAGGTGA  522



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30269596098


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5