BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58850.1
Length=1293
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479983 jgi|Araly1|479983|fgenesh2_kg.3__2684__AT5G58850.1 1951 0.0
Ahg497373 jgi|Araly1|497373|fgenesh2_kg.277__1__AT5G58850.1 1105 0.0
> Ahg479983 jgi|Araly1|479983|fgenesh2_kg.3__2684__AT5G58850.1
Length=1281
Score = 1951 bits (1056), Expect = 0.0
Identities = 1216/1293 (94%), Gaps = 12/1293 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGACCGACGCCTTGTCCATGGAGCTGCGCCGCCGTTGACAGCCGTGGAGAGATTC 60
||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 1 ATGGAAGACCGGCGCCTTGTCCATGGAGCTGTGCCGCCGTTGACAGCCGTTGAGAGATTC 60
Query 61 TTATACGGTCAAAAGAATGATGCCTTGTGTTCCAAGAAACAAGAGAGTTCTAGAGACCAA 120
||||||||||||||||| |||| |||||||||||||||| ||||| |||||||||||| |
Sbjct 61 TTATACGGTCAAAAGAACGATGTCTTGTGTTCCAAGAAAAAAGAGTGTTCTAGAGACCGA 120
Query 121 CCGATCGTGAAGACAAAAATATCGATTGAGACTAGAAGCGACAACAAAGAGAACACAACG 180
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCGATCGTGAAGACGAAAATGTCGATTGAGACTAGAAGCGACAACAAAGAGAACACAACG 180
Query 181 TTTGGGCCGACGAGGGAGAAACACTTGGTCCTTAATGGCGGCAACAGAAACCCTACTGGA 240
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||
Sbjct 181 TTTGGGCCGACGAGGGAGAAACATTTGGTCCTTAATGGCGGCAACAGAAGCCCTATTGGA 240
Query 241 GAAGTGGTCGCTAGAAGTGCAGCCAGAGATTATCAAAACAGTACGAAGAAACGATCATCC 300
||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
Sbjct 241 GAACTGGTCGCTAGAAGTGCAGCCAGAGATTATCAAAACAGTCCGAAGAAACGATCTTAC 300
Query 301 AAGAACCTCATCAAAGGGCAATGGACGGCGGAAGAAGACAGGAAGTTGATAAGGTTGGTG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAGAACCTCATCAAAGGGCAATGGACGGCGGAAGAAGACAGGAAGTTGATAAGGTTGGTG 360
Query 361 AGGCAACATGGGGAGAGGAAATGGGCAATGATATCGGAGAAACTTGAGGGAAGAGCAGGC 420
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 361 AGGCAACATGGGGAGAGGAAATGGGCACTGATATCGGAGAAACTTGAGGGAAGAGCAGGC 420
Query 421 AAACAATGTCGTGAGAGATGGCATAATCATCTCCGTCCTGATATTAAGAAAGATGGATGG 480
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 421 AAACAATGTCGTGAGAGATGGCATAATCATCTCCGTCCTAATATTAAGAAAGATGGATGG 480
Query 481 AGTGAAGAAGAAGAGAGGGTTCTTGTGGAATCACACATGAGAATCGGGAACAAATGGGCA 540
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 481 AGTGAAGAAGAAGAGAAGGTTCTTGTGGAATCGCACATGAGAATCGGGAACAAATGGGCA 540
Query 541 GAGATCGCTAAACTCATACCAGGACGGACTGAGAATTCTATCAAGAACCATTGGAATGCG 600
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAGATAGCTAAACTCATACCAGGACGGACTGAGAATTCTATCAAGAACCATTGGAATGCG 600
Query 601 ACCAAGAGACGTCAAAATTCAAAACGCAAACACAAACGCGAATCAAACGCTGATAACAAT 660
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ACCAAGCGACGTCAAAATTCAAAACGCAAACACAAACGCGAATCAAACGCTGATAACAAT 660
Query 661 GATAGAGATGCCTCTCCATCAGCTAAAAGACCATGCATTCTCCAAGACTACATCAAAAGT 720
|||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 661 GATACCGATGTCTCTCCATCAGCTAAAAGGCCATGCATTCTCCAAGACTACATCAAAAGC 720
Query 721 ATCGAGAGAAATAACATTAACAAGGACAATGACGAGAAGAAGAATGAGAACACCATCAGT 780
|||| ||| ||| ||||||||||| ||||||||||||| ||||||||||
Sbjct 721 ATCGGGAGTAATGACATTAACAAGAACAATGACGAGAA------------CACCATCAGT 768
Query 781 GTTATTTCTACACCTAATCTTGATCAGATCTATTCTGATGGTGATTCCGCGTCGTCCATC 840
||| |||||||||||||||| |||||||||||||||||||| |||||||| ||||||||
Sbjct 769 GTTCTTTCTACACCTAATCTCGATCAGATCTATTCTGATGGAGATTCCGCATCGTCCATG 828
Query 841 CTTGGCGGTCCATATGACGAAGAGCTAGATTACTTTCAAAATATCTTTGCAAACCATCCG 900
||||||| |||||||||||||||||| | |||| ||||||||||||||||||||||||||
Sbjct 829 CTTGGCGATCCATATGACGAAGAGCTGGTTTACCTTCAAAATATCTTTGCAAACCATCCG 888
Query 901 ATTTCTCTTGAGAATTTAGGTTTGAGCCAAACTTCGGATGAGGTAACTCAGTCTTCATCA 960
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 889 ATTTCTCTTGAGAATATAGGTTTGAGCCAAACTTCCGATGAGGTAACTCAGTCTTCAGCA 948
Query 961 TCTGGGTTCATGATCAAGAACCCTAACCCTAACTTGCACGACAGTGTTGGAATTCATCAT 1020
|||| ||||||| |||||||||||| |||||||||||| ||| ||||||| |||||||
Sbjct 949 ACTGGTTTCATGACCAAGAACCCTAAACCTAACTTGCACAACAACGTTGGAACTCATCAT 1008
Query 1021 CAAGAGGCAACGATCACAGCTCCGGCGAATACACCCCACCTTGCGTCTGATATCTACTTA 1080
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1009 CAAGAGGCAGCGATCACAGCTCCGGCGAATACACCCCACCTTGCGTCTGATATATACTTA 1068
Query 1081 TCTTATTTATTGAACGGTACGACGTCTTCATACTCCGACACTCATTTTCCGTCTTCCTCA 1140
|||||||| ||||| || |||||| | || ||||||||||||||||||||||||||||||
Sbjct 1069 TCTTATTTGTTGAATGGGACGACGCCGTCCTACTCCGACACTCATTTTCCGTCTTCCTCA 1128
Query 1141 TCTTCCACGTCATCCACCACCGTAGAGCATGGAGGCCACAACGAGTTTCTTGAGCCTCAA 1200
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1129 TCTTCCACGTCATCCACCACCGTAGAGCACGGAGGCCGCAACGAGTTTCTTGAGCCTCAA 1188
Query 1201 GCTAACTCTACAAGTGAAAGAAGAGAAATGGATCTGATAGAGATGCTCTCTGGTTCTATT 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 GCTAACTCTACAAGTGAAAGAAGAGAAATGGATCTGATAGAGATGCTCTCTGGTTCTATT 1248
Query 1261 CAAGGTAGCAACATCTGCTTCCCGTTGGTCTAG 1293
||||||||||| ||||||||||| ||| |||||
Sbjct 1249 CAAGGTAGCAATATCTGCTTCCCATTGTTCTAG 1281
> Ahg497373 jgi|Araly1|497373|fgenesh2_kg.277__1__AT5G58850.1
Length=1245
Score = 1105 bits (598), Expect = 0.0
Identities = 642/664 (97%), Gaps = 0/664 (0%)
Strand=Plus/Plus
Query 1 ATGGAAGACCGACGCCTTGTCCATGGAGCTGCGCCGCCGTTGACAGCCGTGGAGAGATTC 60
||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 1 ATGGAAGACCGGCGCCTTGTCCATGGAGCTGTGCCGCCGTTGACAGCCGTTGAGAGATTC 60
Query 61 TTATACGGTCAAAAGAATGATGCCTTGTGTTCCAAGAAACAAGAGAGTTCTAGAGACCAA 120
||||||||||||||||| |||| |||||||||||||||| ||||| |||||||||||| |
Sbjct 61 TTATACGGTCAAAAGAACGATGTCTTGTGTTCCAAGAAAAAAGAGTGTTCTAGAGACCGA 120
Query 121 CCGATCGTGAAGACAAAAATATCGATTGAGACTAGAAGCGACAACAAAGAGAACACAACG 180
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCGATCGTGAAGACGAAAATGTCGATTGAGACTAGAAGCGACAACAAAGAGAACACAACG 180
Query 181 TTTGGGCCGACGAGGGAGAAACACTTGGTCCTTAATGGCGGCAACAGAAACCCTACTGGA 240
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||
Sbjct 181 TTTGGGCCGACGAGGGAGAAACATTTGGTCCTTAATGGCGGCAACAGAAGCCCTATTGGA 240
Query 241 GAAGTGGTCGCTAGAAGTGCAGCCAGAGATTATCAAAACAGTACGAAGAAACGATCATCC 300
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 241 GAACTGGTCGCTAGAAGTGCAGCCAGAGATTATCAAAACAGTACGAAGAAACGATCTTAC 300
Query 301 AAGAACCTCATCAAAGGGCAATGGACGGCGGAAGAAGACAGGAAGTTGATAAGGTTGGTG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAGAACCTCATCAAAGGGCAATGGACGGCGGAAGAAGACAGGAAGTTGATAAGGTTGGTG 360
Query 361 AGGCAACATGGGGAGAGGAAATGGGCAATGATATCGGAGAAACTTGAGGGAAGAGCAGGC 420
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 361 AGGCAACATGGGGAGAGGAAATGGGCACTGATATCGGAGAAACTTGAGGGAAGAGCAGGC 420
Query 421 AAACAATGTCGTGAGAGATGGCATAATCATCTCCGTCCTGATATTAAGAAAGATGGATGG 480
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 421 AAACAATGTCGTGAGAGATGGCATAATCATCTCCGTCCTAATATTAAGAAAGATGGATGG 480
Query 481 AGTGAAGAAGAAGAGAGGGTTCTTGTGGAATCACACATGAGAATCGGGAACAAATGGGCA 540
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 481 AGTGAAGAAGAAGAGAAGGTTCTTGTGGAATCGCACATGAGAATCGGGAACAAATGGGCA 540
Query 541 GAGATCGCTAAACTCATACCAGGACGGACTGAGAATTCTATCAAGAACCATTGGAATGCG 600
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAGATAGCTAAACTCATACCAGGACGGACTGAGAATTCTATCAAGAACCATTGGAATGCG 600
Query 601 ACCAAGAGACGTCAAAATTCAAAACGCAAACACAAACGCGAATCAAACGCTGATAACAAT 660
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ACCAAGCGACGTCAAAATTCAAAACGCAAACACAAACGCGAATCAAACGCTGATAACAAT 660
Query 661 GATA 664
||||
Sbjct 661 GATA 664
Score = 795 bits (430), Expect = 0.0
Identities = 511/551 (93%), Gaps = 2/551 (0%)
Strand=Plus/Plus
Query 744 GGACAATGACGAGAAGAA-GAATGAGAACACCATCAGTGTTATTTCTACACCTAATCTTG 802
||||| | || |||| || | | |||||||||||||||||| |||||||||||||||| |
Sbjct 696 GGACATTAACAAGAACAATG-ACGAGAACACCATCAGTGTTCTTTCTACACCTAATCTCG 754
Query 803 ATCAGATCTATTCTGATGGTGATTCCGCGTCGTCCATCCTTGGCGGTCCATATGACGAAG 862
||||||||||||||||||| |||||||| |||||||| ||||||| ||||||||||||||
Sbjct 755 ATCAGATCTATTCTGATGGAGATTCCGCATCGTCCATGCTTGGCGATCCATATGACGAAG 814
Query 863 AGCTAGATTACTTTCAAAATATCTTTGCAAACCATCCGATTTCTCTTGAGAATTTAGGTT 922
|||| | |||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 815 AGCTGGTTTACCTTCAAAATATCTTTGCAAACCATCCGATTTCTCTTGAGAATATAGGTT 874
Query 923 TGAGCCAAACTTCGGATGAGGTAACTCAGTCTTCATCATCTGGGTTCATGATCAAGAACC 982
||||||||||||| ||||||||||||||||||||| || |||| ||||||| ||||||||
Sbjct 875 TGAGCCAAACTTCCGATGAGGTAACTCAGTCTTCAGCAACTGGTTTCATGACCAAGAACC 934
Query 983 CTAACCCTAACTTGCACGACAGTGTTGGAATTCATCATCAAGAGGCAACGATCACAGCTC 1042
|||| |||||||||||| ||| ||||||| |||||||||||||||| ||||||||||||
Sbjct 935 CTAAACCTAACTTGCACAACAACGTTGGAACTCATCATCAAGAGGCAGCGATCACAGCTC 994
Query 1043 CGGCGAATACACCCCACCTTGCGTCTGATATCTACTTATCTTATTTATTGAACGGTACGA 1102
||||||||||||||||||||||||||||||| |||||||||||||| ||||| || ||||
Sbjct 995 CGGCGAATACACCCCACCTTGCGTCTGATATATACTTATCTTATTTGTTGAATGGGACGA 1054
Query 1103 CGTCTTCATACTCCGACACTCATTTTCCGTCTTCCTCATCTTCCACGTCATCCACCACCG 1162
|| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1055 CGCCGTCCTACTCCGACACTCATTTTCCGTCTTCCTCATCTTCCACGTCATCCACCACCG 1114
Query 1163 TAGAGCATGGAGGCCACAACGAGTTTCTTGAGCCTCAAGCTAACTCTACAAGTGAAAGAA 1222
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1115 TAGAGCACGGAGGCCGCAACGAGTTTCTTGAGCCTCAAGCTAACTCTACAAGTGAAAGAA 1174
Query 1223 GAGAAATGGATCTGATAGAGATGCTCTCTGGTTCTATTCAAGGTAGCAACATCTGCTTCC 1282
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1175 GAGAAATGGATCTGATAGAGATGCTCTCTGGTTCTATTCAAGGTAGCAATATCTGCTTCC 1234
Query 1283 CGTTGGTCTAG 1293
| ||| |||||
Sbjct 1235 CATTGTTCTAG 1245
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48339858756
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5