BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58860.1
Length=1779
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497374 jgi|Araly1|497374|fgenesh2_kg.277__2__AT5G58860.1 2887 0.0
Ahg930580 jgi|Araly1|930580|scaffold_303037.1 2518 0.0
> Ahg497374 jgi|Araly1|497374|fgenesh2_kg.277__2__AT5G58860.1
Length=1774
Score = 2887 bits (1563), Expect = 0.0
Identities = 1704/1773 (96%), Gaps = 5/1773 (0%)
Strand=Plus/Plus
Query 3 CTCTTAACAATCTCTCCACAGAACAAAAGCAAAAAGCCTAAACCGGGATAATGGAAGCTC 62
|||| ||||||||||||| | ||||||| ||||||||||||||||||| |||||||||||
Sbjct 1 CTCTCAACAATCTCTCCATACAACAAAAACAAAAAGCCTAAACCGGGAAAATGGAAGCTC 60
Query 63 TAAACTCTATCTTAACCGGCTACGCCGTGGCAGCCCTATCAGTCTACGCTCTTTGGTTCT 122
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 TAAACCCTATCTTAACCGGCTACGCCGTGGCCGCCCTATCAGTCTACGCTCTTTGGTTCT 120
Query 123 ACTTCCTGTCCCGAAGACTAACCGGTCCCAAAGTCTTACCGTTCGTAGGAAGCTTACCGT 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACTTCCTGTCCCGAAGACTAACCGGTCCCAAAGTCTTACCGTTCGTAGGAAGCTTACCGT 180
Query 183 ATCTAATCGCTAACCGGAGCCGAATTCACGATTGGATCGCTGATAATCTCCGAGCAACTG 242
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATCTAATCGCAAACCGGAGCCGAATTCACGATTGGATCGCTGATAATCTCCGAGCAACTG 240
Query 243 GTGGTACGTATCAAACATGCACCATGGTGATACCTTTCGTAGCCAAGGCGCAAGGGTTTT 302
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 241 GTGGTACGTATCAAACATGCACCATGGTGATACCTTTCGTAGCCAAGACGCAAGGGTTTT 300
Query 303 ACACTGTGACGTGTCACCCAAAAAACGTCGAGCATATCCTTAAGACACGGTTCGACAACT 362
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 301 ACACCGTGACGTGTCACCCAAAAAACGTCGAGCATATCCTTAAGACACGGTTTGACAACT 360
Query 363 ATCCGAAAGGTCCGATGTGGCGCGCTGCTTTCCACGACCTGTTAGGACAAGGAATCTTCA 422
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 361 ATCCGAAAGGTCCGATGTGGCGAGCTGCTTTCCACGACCTGTTAGGACAAGGAATCTTTA 420
Query 423 ACAGCGACGGTGACACGTGGCTCATGCAACGTAAGACTGCAGCGCTTGAGTTCACAACTA 482
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 421 ACAGCGACGGTGACACGTGGCTTATGCAACGTAAGACTGCAGCGCTTGAGTTCACTACTA 480
Query 483 GAACTCTTAGACAAGCCATGGCTCGGTGGGTTAACGGGACTATCAAGAACCGGTTATGGC 542
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 481 GAACTCTTCGACAAGCCATGGCTCGGTGGGTTAATGGGACTATCAAGAACCGGTTATGGC 540
Query 543 TTATATTAGACCGTGCGGTTCAAAACAACAAACCGGTTGATCTTCAAGATTTGTTTTTGA 602
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTATATTAGACCGGGCGGTTAAAAACAACAAACCGGTTGATCTTCAAGATTTGTTTTTGA 600
Query 603 GGTTAACTTTTGACAACATTTGTGGTCTGACTTTTGGTAAAGACCCGGAGACGCTCTCTC 662
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 601 GGTTAACTTTTGACAACATTTGTGGTCTGACTTTTGGAAAAGACCCGGAGACGCTCTCTC 660
Query 663 TGGATCTACCGGATAATCCCTTCTCTGTCGCTTTTGACACCGCGACAGAGGCTA-CTCTA 721
|||| |||||||||||||| |||||||||||||||||||||||||||||||||| || ||
Sbjct 661 TGGACCTACCGGATAATCCTTTCTCTGTCGCTTTTGACACCGCGACAGAGGCTACCT-TA 719
Query 722 AAGAGACTTCTCTACACCGGTTTCTTGTGGAGGATTCAGAAAGCTATGGGGATTGGATCA 781
||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 720 AAGCGACTTCTCTACACCGGTTTCTTGTGGCGAATTCAGAAAGCTATGGGGATTGGATCA 779
Query 782 GAAGATAAGCTCAAGAAGAGTCTTGAAGTCGTTGAGACTTACATGAACGATGCAATCGAC 841
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GAGGATAAGCTCAAGAAGAGTCTTGAAGTCGTTGAGACTTACATGAACGATGCAATCGAC 839
Query 842 GCTCGGAAAAACTCTCCCTCCGATGATCTTTTGTCACGTTTCTTGAAGAAACGTGACGTT 901
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 840 GCTCGGAAAAACTCTCCCTCCGATGATCTTTTGTCGCGCTTCTTGAAGAAACGTGACGTT 899
Query 902 AACGGTAACGTTCTTCCAACAGATGTTCTTCAGCGTATCGCGCTTAACTTTGTTCTCGCG 961
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 900 AACGGTAACGTTCTTCCGACAGATGTTCTTCAGCGCATCGCGCTTAACTTTGTTCTCGCG 959
Query 962 GGCCGTGACACTTCTTCGGTGGCCTTGAGCTGGTTCTTCTGGCTCGTCATGAATAACCGG 1021
|| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 960 GGTCGTGACACTTCTTCTGTGGCCTTGAGTTGGTTCTTCTGGCTCGTCATGAATAACCGC 1019
Query 1022 GAGGTGGAAACGAAGATCGTTAACGAGTTGTCGATGGTTCTGAAGGAGACACGTGGCAAT 1081
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||
Sbjct 1020 GAGGTGGAAACGAAGATCGTTAACGAGTTATCGACGGTTCTGAAGGAGACACGTGGCGAT 1079
Query 1082 GATCAGGAGAAATGGACGGAGGAGCCGTTAGAGTTCGACGAGGCAGATAGGCTCGTTTAC 1141
|||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1080 GATCAGGAAAAATGGACGGAGGAGCCGTTAGAGTTCGACGAAGCAGATAGACTCGTTTAC 1139
Query 1142 CTCAAGGCTGCTTTGGCTGAAACGCTGCGTTTATACCCTTCTGTGCCTCAGGATTTCAAA 1201
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1140 CTCAAAGCTGCTTTGGCTGAAACGCTGCGTTTATATCCTTCTGTGCCTCAGGATTTCAAG 1199
Query 1202 TACGTCGTAGACGATGACGTTTTGCCGGACGGGACTTTCGTGCCAAGAGGCTCGACGGTG 1261
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1200 TACGTCGTAGACGATGACGTTTTGCCTGACGGGACTTTCGTGCCAAGAGGCTCGACGGTG 1259
Query 1262 ACCTACTCGATTTACTCGATCGGACGTATGAAAACAATTTGGGGCGAAGATTGTCTCGAG 1321
||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1260 ACCTATTCGATTTACTCGATCGGACGTATGAAAACGATTTGGGGAGAAGATTGTCTCGAG 1319
Query 1322 TTCCGTCCGGAACGGTGGCTGACAGCCGACGGTGAACGGTTTGAGACTCCCAAAGATGGT 1381
|||||||| || |||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1320 TTCCGTCCAGAGCGGTGGCTCACAGCCGACGGTGAACGGTTCGAGACTCCCAAAGATGGT 1379
Query 1382 TACAAGTTCGTAGCGTTCAACGCCGGACCAAGGACTTGCTTGGGAAAGGACTTGGCTTAT 1441
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 TACAAGTTCGTAGCATTCAACGCCGGACCAAGGACTTGCTTGGGAAAGGACTTGGCTTAC 1439
Query 1442 AATCAGATGAAGTCGGTGGCTTCAGCCGTTCTCCTCCGTTACCGGGTTTTTCCGGTTCCC 1501
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1440 CTTCAGATGAAGTCGGTGGCTTCAGCCGTTCTCCTCCGTTACCGGGTATTTCCGGTTCCC 1499
Query 1502 GGTCACCGCGTTGAGCAAAAGATGTCGCTGACGCTTTTCATGAAGAACGGTTTACGTGTT 1561
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 GGTCACCGCGTTGAACAAAAGATGTCGCTGACGCTTTTCATGAAGAACGGTTTACGTGTT 1559
Query 1562 TATTTGCAACCTCGTGGTGAGGTGCTTGCATGA-T--TCACATTAAGGGTATTATCGTAA 1618
|| ||||||||||||| ||||||| |||||||| | | | |||||||||||||| ||||
Sbjct 1560 TACTTGCAACCTCGTGTTGAGGTGGTTGCATGATTAATTATATTAAGGGTATTATGGTAA 1619
Query 1619 ATATGTTTGTCATTTGAAGTTTAAATTGTTTTAAGAACAACCTACTTTATTCTATGTTTT 1678
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 ATATGTTTGTCATTTCAAGTTTAAATTGTTTTAAGAACAACCTACTTTATTCTATGTTTT 1679
Query 1679 CTCCACCTACAAAATACTTATTATGATATATATGCACtttttgtgcctttgtttgtttga 1738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 CTCCACCTACAAAATACTTATTATGATATATATGCACTTTTTGTGCCTTTGTTTGTTTGA 1739
Query 1739 gtttgttcaactctttttgaataaaagtttatt 1771
|||||||||||||||||||||||||||||||||
Sbjct 1740 GTTTGTTCAACTCTTTTTGAATAAAAGTTTATT 1772
> Ahg930580 jgi|Araly1|930580|scaffold_303037.1
Length=1579
Score = 2518 bits (1363), Expect = 0.0
Identities = 1513/1585 (95%), Gaps = 12/1585 (1%)
Strand=Plus/Plus
Query 33 AAAAAGCCTAAACCGGGATAATGGAAGCTCTAAACTCTATCTTAACCGGCTACGCCGTGG 92
|||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1 AAAAAGCCTAAACCGGGAAAATGGTAGCTCTAAACCCTATCTTAACCGGCTACGCCGTGG 60
Query 93 CAGCCCTATCAGTCTACGCTCTTTGGTTCTACTTCCTGTCCCGAAGACTAACCGGTCCCA 152
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCGCCCTATCAGTCTACGCTCTTTGGTTCTACTTCCTGTCCCGAAGACTAACCGGTCCCA 120
Query 153 AAGTCTTACCGTTCGTAGGAAGCTTACCGTATCTAATCGCTAACCGGAGCCGAATTCACG 212
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 121 AAGTCTTACCGTTCGTAGGAAGCTTACCGTATCTAATCGCAAACCGGAGCCGAATTCACG 180
Query 213 ATTGGATCGCTGATAATCTCCGAGCAACTGGTGGTACGTATCAAACATGCACCATGGTGA 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATTGGATCGCTGATAATCTCCGAGCAACTGGTGGTACGTATCAAACATGCACCATGGTGA 240
Query 273 TACCTTT--CGTAGCCAAGGCGCAAGGGTTTTACACTGTGACGTGTCACCCAAAAAACGT 330
||||||| ||| |||||| || | |||||||| |||||||||||||||||||||||
Sbjct 241 TACCTTTTTCGTGGCCAAGACG---G--TTTTACACCGTGACGTGTCACCCAAAAAACGT 295
Query 331 CGAGCATATCCTTAAGACACGGTTCGACAACTATCCGAAAGGTCCGATGTGGCGCGCTGC 390
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 296 CGAGCATATCCTTAAGACACGGTTTGACAACTATCCGAAAGGTCCGATGTGGCGAGCTGC 355
Query 391 TTTCCACGACCTGTTAGGACAAGGAATCTTCAACAGCGACGGTGACACGTGGCTCATGCA 450
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 356 TTTCCACGACCTGTTAGGACAAGGAATCTTTAACAGCGACGGTGACACGTGGCTTATGCA 415
Query 451 ACGTAAGACTGCAGCGCTTGAGTTCACAACTAGAACTCTTAGACAAGCCATGGCTCGGTG 510
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 416 ACGTAAGACTGCAGCGCTTGAGTTCACTACTAGAACTCTTCGACAAGCCATGGCTCGGTG 475
Query 511 GGTTAACGGGACTATCAAGAACCGGTTATGGCTTATATTAGACCGTGCGGTTCAAAACAA 570
|||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 476 GGTTAATGGGACTATCAAGAACCGGTTATGGCTTATATTAGACCGGGCGGTTAAAAACAA 535
Query 571 CAAACCGGTTGATCTTCAAGATTTGTTTTTGAGGTTAACTTTTGACAACATTTGTGGTCT 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 CAAACCGGTTGATCTTCAAGATTTGTTTTTGAGGTTAACTTTTGACAACATTTGTGGTCT 595
Query 631 GACTTTTGGTAAAGACCCGGAGACGCTCTCTCTGGATCTACCGGATAATCCCTTCTCTGT 690
||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 596 GACTTTTGGAAAAGACCCGGAGACGCTCTCTCTGGACCTACCGGATAATCCTTTCTCTGT 655
Query 691 CGCTTTTGACACCGCGACAGAGGCTACTCT-AAAGAGACTTCTCTACACCGGTTTCTTGT 749
||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||
Sbjct 656 CGCTTTTGACACCGCGACAGAGGCTAC-CTTAAAGCGACTTCTCTACACCGGTTTCTTGT 714
Query 750 GGAGGATTCAGAAAGCTATGGGGATTGGATCAGAAGATAAGCTCAAGAAGAGTCTTGAAG 809
|| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 715 GGCGAATTCAGAAAGCTATGGGGATTGGATCAGAGGATAAGCTCAAGAAGAGTCTTGAAG 774
Query 810 TCGTTGAGACTTACATGAACGATGCAATCGACGCTCGGAAAAACTCTCCCTCCGATGATC 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 TCGTTGAGACTTACATGAACGATGCAATCGACGCTCGGAAAAACTCTCCCTCCGATGATC 834
Query 870 TTTTGTCACGTTTCTTGAAGAAACGTGACGTTAACGGTAACGTTCTTCCAACAGATGTTC 929
||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 835 TTTTGTCGCGCTTCTTGAAGAAACGTGACGTTAACGGTAACGTTCTTCCGACAGATGTTC 894
Query 930 TTCAGCGTATCGCGCTTAACTTTGTTCTCGCGGGCCGTGACACTTCTTCGGTGGCCTTGA 989
||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 895 TTCAGCGCATCGCGCTTAACTTTGTTCTCGCGGGTCGTGACACTTCTTCTGTGGCCTTGA 954
Query 990 GCTGGTTCTTCTGGCTCGTCATGAATAACCGGGAGGTGGAAACGAAGATCGTTAACGAGT 1049
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 GTTGGTTCTTCTGGCTCGTCATGAATAACCGGGAGGTGGAAACGAAGATCGTTAACGAGT 1014
Query 1050 TGTCGATGGTTCTGAAGGAGACACGTGGCAATGATCAGGAGAAATGGACGGAGGAGCCGT 1109
| |||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 1015 TATCGACGGTTCTGAAGGAGACACGTGGCGATGATCAGGAAAAATGGACGGAGGAGCCGT 1074
Query 1110 TAGAGTTCGACGAGGCAGATAGGCTCGTTTACCTCAAGGCTGCTTTGGCTGAAACGCTGC 1169
||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1075 TAGAGTTCGACGAAGCAGATAGACTCGTTTACCTCAAAGCTGCTTTGGCTGAAACGCTGC 1134
Query 1170 GTTTATACCCTTCTGTGCCTCAGGATTTCAAATACGTCGTAGACGATGACGTTTTGCCGG 1229
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1135 GTTTATATCCTTCTGTGCCTCAGGATTTCAAGTACGTCGTAGACGATGACGTTTTGCCTG 1194
Query 1230 ACGGGACTTTCGTGCCAAGAGGCTCGACGGTGACCTACTCGATTTACTCGATCGGACGTA 1289
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1195 ACGGGACTTTCGTGCCAAGAGGCTCGACGGTGACCTATTCGATTTACTCGATCGGACGTA 1254
Query 1290 TGAAAACAATTTGGGGCGAAGATTGTCTCGAGTTCCGTCCGGAACGGTGGCTGACAGCCG 1349
||||||| |||||||| |||||||||||||| |||||||| || |||||||| |||||||
Sbjct 1255 TGAAAACGATTTGGGGAGAAGATTGTCTCGATTTCCGTCCAGAGCGGTGGCTCACAGCCG 1314
Query 1350 ACGGTGAACGGTTTGAGACTCCCAAAGATGGTTACAAGTTCGTAGCGTTCAACGCCGGAC 1409
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1315 ACGGTGAACGGTTCGAGACTCCCAAAGATGGTTACAAGTTCGTAGCATTCAACGCCGGAC 1374
Query 1410 CAAGGACTTGCTTGGGAAAGGACTTGGCTTATAATCAGATGAAGTCGGTGGCTTCAGCCG 1469
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1375 CAAGGACTTGCTTGGGAAAGGACTTGGCTTACCTTCAGATGAAGTCGGTGGCTTCAGCCG 1434
Query 1470 TTCTCCTCCGTTACCGGGTTTTTCCGGTTCCCGGTCACCGCGTTGAGCAAAAGATGTCGC 1529
||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||
Sbjct 1435 TTCTCCTCCGTTACCGGGTATTTCCGGTTCCCGGTAACCGCGTTGAACAAAAGATGTCGC 1494
Query 1530 TGACGCTTTTCATGAAGAACGGTTTACGTGTTTATTTGCAACCTCGTGGTGAGGTGCTTG 1589
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 1495 TGACGCTTTTCATGAAGAACGGTTTACGTGTTTACTTGCAACCTCGTGGTGAGGTGGTTG 1554
Query 1590 CATGATTCAC-AT-T-AAGGGTATT 1611
||||||| | || | |||||||||
Sbjct 1555 CATGATTAATTATATTAAGGGTATT 1579
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66772199485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5