BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58880.1
Length=3267
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917622 jgi|Araly1|917622|Al_scaffold_0008_2373 3843 0.0
Ahg342640 jgi|Araly1|342640|fgenesh1_pg.C_scaffold_3002403 3843 0.0
> Ahg917622 jgi|Araly1|917622|Al_scaffold_0008_2373
Length=3228
Score = 3843 bits (2081), Expect = 0.0
Identities = 2553/2775 (92%), Gaps = 55/2775 (2%)
Strand=Plus/Plus
Query 1 ATGGGCATTGACACGAAAGAGATCATCGTTATATTATGGAAAATTCTTGGATATTCGATG 60
|||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGGCGTTGACGCGAAAGAGATCATCGTAATATTATGGAAAATTCTTGGATATTCGATG 60
Query 61 AACATGAGCATCAAATTCATGATAAACCACCCGGTTTTGTCAGGGGTTTCAATGTTTTTA 120
|||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||
Sbjct 61 AACATGAGCATCAAATTCATGAGAAACCACCCAATATTGTCAGGGGTTTCAATGTTTTTA 120
Query 121 CTCGTGCTATACATTTTCCTCCCTTCTCTGTTCTTCTTCTTGATCTA-TACATCACCGGT 179
|| ||||||||||||||||||||| |||| || ||||||||||| || | | ||||||||
Sbjct 121 CTTGTGCTATACATTTTCCTCCCTACTCTCTTGTTCTTCTTGATTTACT-CGTCACCGGT 179
Query 180 TCTTGCATGTGCTCTAGTGTATGCCCGAGAAAAGCTAGGGTTAAGATTCTCAAGTTCGTA 239
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 180 TCTTGCATGTGCTCTAGTGTATGCACGAGAAAAGCTAGGATTAAGATTCTCAAGTTCGTA 239
Query 240 TTCAGAGCCAAAGAAGAGTTGTGGAGGAGAAAAGAGATGCCATTTAAAACAACAACGAAG 299
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 240 TTCAGAGCCAAAGAAGAGTTGTGGTGGAGAAAAGAGATGTCATTTAAAACAACAACGAAG 299
Query 300 TGTTAGACGAAATGCTCGAATGAAAGTTGAAGAATGGGATTCACAGACAAGCGAAGAAGA 359
||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 300 TGTCCGACGAAATGCTCGAATGAAAGTTGAAGAATGGGATTCACAAACAAGCGAGGAAGA 359
Query 360 GAAAGACAAAGTTATCTTGACTTCTCTTTACAATGATCTCCTTGGTCGTACTCCTCAATT 419
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 360 GAAAGACAAAGTTATCTTGACTTCTCTTTACAATGACCTCCTTGGTCGTACTCCTCATTT 419
Query 420 CGAAGAGTCTCCAAAAGCTTTAGAAACCAATGTAGTAGAGGAAGAAGAAGACAAAGAGAA 479
||| ||||||||||||||||||||||||||||||||||| | ||||||||||| |||||
Sbjct 420 CGAGGAGTCTCCAAAAGCTTTAGAAACCAATGTAGTAGA-G--GAAGAAGACAATGAGAA 476
Query 480 GGAGTTTCTTGGAGAGGGAGTTTCTCGTGATTTGGGTCATCTCAACGTTGAAGAACCAAT 539
||||||||||||||||| || |||||||||||| ||||| || |||||||||||||||||
Sbjct 477 GGAGTTTCTTGGAGAGGAAGATTCTCGTGATTTAGGTCAACTTAACGTTGAAGAACCAAT 536
Query 540 GGTTTGCAACTGTGAGATCAAATATGGAGAATCAGATGGTAAAGTAGAGATGAAACAGGA 599
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 537 GGTTTGCAACTGTGAGATCAAATATGGAGAATCAGATGGTAAAGAAGAGATGAAAGAGGA 596
Query 600 GATGAGTAATGCTAATGAGCATGGGATTTCAGAGATTGAGAGAAATAAGAGACTAGAG-T 658
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 597 GATGAGTAATGTTAATGAGCAGGGGATTTCAGAGATTGAGAGAAATAAGAGACTAGAGAG 656
Query 659 CTTTAATCGCTAGAAGAAGAGCGAGGAGACGCTTTAGACTAGCTTTAGATCAAAAGAATA 718
| ||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 657 C-TTAATAGCTAGAAGAAGAGCGAGGAGACTCTTTAGACTAGCTTTAGATCAAAGGAATA 715
Query 719 AGCTTCAAGCTGAAGAAACAACTAGCCCTAGACAGAACAACACCAACAACCTTCACGTTA 778
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 716 AGCTTCAAGCTGAAGAAACAACTAGCCCTAGACAGAACAACACCAACAGCCTTCACGTTA 775
Query 779 CGGTTTCGAGGAACTCACTTGAAAAACGTCGAAATAATTCATCAGATGGTACTACTGTTA 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 CGGTTTCGAGGAACTCACTTGAAAAACGTCGAAATAATTCATCAGATGGTACTACTGTTA 835
Query 839 AAGGATTACAGATTCCAGGCTCAGCTCCTTCTGTGATGTTACAAGGAAGAAACCCTTTTG 898
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 836 AAGGATTACCGATTCCAGGCTCAGCTCCTTCTGTGTTGTTACAAGGAAGAAACCCTTTTG 895
Query 899 ACATTCCTTATGATCCTCAAGAAGAAAGACCTAATCTTACTGGAGATAGCTTTGATCAAG 958
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 ACATACCTTATGATCCTCAAGAAGAAAGACCTAATCTTACTGGAGATAGCTTTGATCAAG 955
Query 959 AGTTTTCATTGTTTAATCAAAAAGATTTGTTCTTTTGTCGTCATGAGAGCTTCTGTCGTT 1018
| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 956 AATTTTCATTGTTTAATCAGAAAGATATGTTCTTTTGTCGTCATGAGAGCTTCTGTCGTT 1015
Query 1019 TTTCTCTGTTCTCACCAGAACATGTTCAGTGTATGAACAGCCCAGTTTCTGCTTCAGACA 1078
|| ||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1016 TTGCTCTGTTTTCACCAGAACATGCTCAATGTATGAACAGCCCAGTTTCTGCTTCAGACA 1075
Query 1079 TTTCAACTACTAGGAAACGTTTAGATTTGGAGAATGAATATATTGATCATACTGAACAAA 1138
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1076 TTTCAACTACTAGGAAACGTTTAGATTTGGACAATGAATATATGGATCATACTGAACAAA 1135
Query 1139 ATCTCCCAT-TAAATGGAAAAGAAGCTACAATAGAAGACGATGATAAAAGCGTTGTGAGT 1197
||||||||| | |||||||| | |||||||||||||||||| ||||||||||||||||||
Sbjct 1136 ATCTCCCATGT-AATGGAAAGGGAGCTACAATAGAAGACGACGATAAAAGCGTTGTGAGT 1194
Query 1198 CGAAAAAGCGAAGAAAAAGAGGTAGAAATGAATG---ATGAGACAGATTCAAACAAAGAA 1254
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 1195 GGAAAAAGCGAAGAAAGGGAGGTAGAAATGAATGATAATGAGACAGATTCAAACAAAGAA 1254
Query 1255 GAATGTGATGATTCAAGTTGTTCAGAAGAAAGTGAGTCAGAACT-ATGCCGTTTAAACAA 1313
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1255 GAATGTGATGATTCAAGTTGTTCAGAAGAAAGTGAGTCAGAACTCA-GCCGTTTAAACAA 1313
Query 1314 AGCGGAGCTCAGGGAAGCTATATGCCAATCCATGGACAACAATCCCGGTTATCTTGTGAA 1373
||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1314 AGCCGAGCTCAGGGAAGCTATATGCCAATCGATGGATAACAATCCCGGTTATCTTGTGAA 1373
Query 1374 TCAAGCAAGAAATAGTATTCCAAGCACATTACCTAGAGGTATAGTAGCGCCAAGACTAGA 1433
||| |||||||||||||||||| |||||| ||||||||| |||||||||||||||||||
Sbjct 1374 CCAAACAAGAAATAGTATTCCAACCACATTGCCTAGAGGTTTAGTAGCGCCAAGACTAGA 1433
Query 1434 TGATAACAACATGTTTTACGCTCGCAAATGTGGAAATTCGCACAGTCGAACATTTTCAGT 1493
|||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1434 TGATAACAACATGTTTTATGCTCGAAAATGCGGAAATTCGCACAGTCGAACATTTTCAGT 1493
Query 1494 TGCCTCGGATATGCAAGTTGAGGTTTCAGAGATTGGTTCACCTCCTACAACAGTTGATTG 1553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 TGCCTCGGATATGCAAGTTGAGGTTTCAGAGATTGGTTCACCTCCTACAACAGTTGATTG 1553
Query 1554 GCTTGATGACTGGTCTACTGGTGGTGAATCTTACATTTATGATACAGATATTGACAGAGA 1613
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1554 GCTTGATGACTGGTCTAATGGCGGTGAATCTTACATTTATGATACAGATATTGACAGAGA 1613
Query 1614 AATCGTCCGCGATGAAGAATCACGTAAGAGGATGTCTCATCAATATGAATCAAGAAGTGG 1673
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1614 AATCGTCCGCGATGAAGAATCACGTAAGAGGATCTCTCACCAATATGAATCAAGAAGTGG 1673
Query 1674 AATAGGATCAAAAGAGGAGAATAGTGAGCCAAGTACTAAACCTGAGGCCAAACCAGATCA 1733
||||||||||||||||||||||| |||| || | ||||||||||||||||||||| ||||
Sbjct 1674 AATAGGATCAAAAGAGGAGAATAATGAGACATGGACTAAACCTGAGGCCAAACCAAATCA 1733
Query 1734 GGATTGTGTGGTAGATGAAGACCTTATAACAGTTGATGAT-AT--GTCATTGTTAGATAG 1790
| ||||||||||||||||| |||||||||||||||||||| || |||||||||||| ||
Sbjct 1734 GAATTGTGTGGTAGATGAAAACCTTATAACAGTTGATGATGATTTGTCATTGTTAGAAAG 1793
Query 1791 AAGAACCCAAAGTGAAGAGATTTTTGAGCAGACACCTTCTAGTTCCAGTGATGTGTCCAA 1850
||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1794 AAGAAGCCAAACCGAAGAGATTTTTGAGCAGACACCTTCTAGTTCCAATGATGTGTCCAA 1853
Query 1851 GCCTACAAGTTCTGGGAGATTTGAAGGTATGTTGTTCCATACAAGTGCCTCATTGTCGTC 1910
||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1854 GCCTACAAGCTCTGGGAAATTTGAAGGTATGTTGTTCCATACAAGTGCGTCATTGTCGTC 1913
Query 1911 TATAACAGAAGAACCTGAAACAATCTTGGATTCGATCGATGGCGTCAACTCGGAGATTAT 1970
|||||||||||| ||||||||||||||||| ||||||||||| | ||||||||||| | |
Sbjct 1914 TATAACAGAAGAGCCTGAAACAATCTTGGACTCGATCGATGGGGGCAACTCGGAGAATCT 1973
Query 1971 GAATAGTTTGACTGGAGAA-TTAACTGACCAGAGACCTCTGACTAGTCTTGATTTATCCA 2029
||||| |||||||| |||| ||| |||||| |||||||||||||| ||| |||| |||||
Sbjct 1974 GAATAATTTGACTGAAGAACTTA-CTGACCCGAGACCTCTGACTACTCTGGATTCATCCA 2032
Query 2030 TGGAGAATTTGATAGATGAAGAAGTTGCTGATATGCAACAAATAGAAAATGATGATCTTT 2089
|| |||| ||||| ||||||||||| |||||| || ||||| ||||||||||||||||||
Sbjct 2033 TGAAGAAATTGATTGATGAAGAAGTGGCTGATGTGAAACAAGTAGAAAATGATGATCTTT 2092
Query 2090 GTGGATCTCCTAAGATTATTGATTTTGATATCATTGATCATCAGCAGACAGATCAAACGT 2149
||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||| |
Sbjct 2093 GTGGATCTCCTAAGATTATTGATTTAGATATCATTGATCATCAGCAGAAAGACCAAATG- 2151
Query 2150 CGGA-TAGCATTCAAGGAGAACATGAGGAAACTAAGAGCTTCTTGGATGCTTCTTTGGAC 2208
| || |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 2152 CTGAGTAGCATTCAAGGAGAACATGGGGAAACTAAGAGCTTTTTGGATGCTTCTTTGGAC 2211
Query 2209 ACACCCTTTATAGAATCATTTGAGAGAGAGGTACAAGAAGAAGAAGAATCAAACTTAGAC 2268
||| ||| |||||||||||||||||||||| || ||| ||||||||||||||||||||||
Sbjct 2212 ACATCCTATATAGAATCATTTGAGAGAGAGTTAGAAGGAGAAGAAGAATCAAACTTAGAC 2271
Query 2269 AAGTCT-ACTGAGGAAACAACAAAAGAAACAGAAAGTGA--T---T-----TGA---AGA 2314
||| || ||| |||||||||||||| ||||||||| ||| | | ||| |||
Sbjct 2272 AAG-CTTACTAAGGAAACAACAAAACAAACAGAAAATGAGGTACATCAAAGTGATTTAGA 2330
Query 2315 G--TTCTCCGGGACAAGTTTCT-ACAGAATTACTAGAAAGTGTGGTAAGGGAAGAGAATG 2371
| |||||| | |||||| || ||||||||||||| ||||| | | | |||||||||||
Sbjct 2331 GAGTTCTCCATGCCAAGTT-CTTACAGAATTACTAGTAAGTGAGATTATGGAAGAGAATG 2389
Query 2372 GTCAGGAATTAGTCAA-AAGTGCTGATGAGAAAGCAATG-CTAGTAGAGGAAGAGAAGAC 2429
|||||||||||| || ||| | |||||| ||| | | |||||| |||||||| ||
Sbjct 2390 GTCAGGAATTAG--AAGAAGA----A-GAGAAACCAAGGTC-AGTAGAAGAAGAGAAAAC 2441
Query 2430 TCATAATGTCTTGGAAGCATCTTCGAGCAATGCTCATACACAGTTGGTTGATTTAGACTA 2489
||||||||| |||||| |||||||||| |||||||||||||||||||||| ||| ||
Sbjct 2442 TCATAATGTGGTGGAAGAATCTTCGAGCCATGCTCATACACAGTTGGTTGA---AGATTA 2498
Query 2490 TGGAAACGCAGAAAATTCTAGTGATGTGATACTTCTGCAAGTCCAAGATAGTCATAAGTC 2549
|||||||| ||||||| ||||||||||||||||||||||| | ||||||||| |||| ||
Sbjct 2499 TGGAAACGAAGAAAATGCTAGTGATGTGATACTTCTGCAATTTCAAGATAGTAATAACTC 2558
Query 2550 ACCACTAGATGAGTCAGTTGATCAGGAGATCTCTAAGGAAGTAGAAAAAACAGAGTTATT 2609
|||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||
Sbjct 2559 ACCACTAGATGAGTCAACTGATCAGGAGGTCTCTAAGGAAGGAGAAAAAACAGAGTTATT 2618
Query 2610 AAAAGATTTTTGTGGTGAATCAACCCAAGAATACAAAAATAGAG-GAAATGTTGAGGCCT 2668
||||||||| |||||||| | ||| |||||||||||||| ||| || ||||| ||
Sbjct 2619 GGAAGATTTTTACGGTGAATCTTCTGAAGTATACAAAAATAGAGCGAA-TGCTGAGGTCT 2677
Query 2669 GTGGAAACGCAGAAAATGCTAGTGATGTGTTACTTCTGCAAGTCCAAGATGGTAATAACT 2728
||||||||||||||| |||||||||||| | ||||||||||||||||||||||| |||
Sbjct 2678 ATGGAAACGCAGAAAACGCTAGTGATGTGACATTTCTGCAAGTCCAAGATGGTAATTACT 2737
Query 2729 CACCACTAGATGAGT 2743
|||||| ||||||||
Sbjct 2738 CACCACGAGATGAGT 2752
Score = 632 bits (342), Expect = 4e-180
Identities = 443/490 (90%), Gaps = 14/490 (3%)
Strand=Plus/Plus
Query 2782 GAGGTATTGAAAGATTT-TAATGATGAAACGCCCCAAGGATACAAAAATAGAGCCAATGT 2840
||| ||||||||||||| | |||||||| || |||||| ||||||||||||||| |||||
Sbjct 2749 GAGTTATTGAAAGATTTCT-ATGATGAATCGTCCCAAGAATACAAAAATAGAGCTAATGT 2807
Query 2841 TGAGGAAGAATCAGTAGTTTTAGCTGACACTCAAAACTCACAAGATTCACAAACATGGAC 2900
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2808 TGAGGAAGAATCAGTAGTTTTAGCCAACACTCAAAACTCACAAGATTCACAAACATGGAC 2867
Query 2901 TCAACAGTGTGGTATAGATTCTTCCCAAGGGATATCACCAAGAACATTGGAGATCACCCA 2960
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2868 TCAACAGTGTGGTATAGATTCTTCCCAAGGGATATCACCAAGAACGTTGGAGATCACCCA 2927
Query 2961 GCAACTAGAGCAAGACGATGTTATTGCCTCTTCCTCAAACACCGTCTCTCAAGATATCAA 3020
||||||||| ||||||||||||||| | | |||| || ||||||||| ||| |
Sbjct 2928 ACAACTAGAGAAAGACGATGTTATTG----AT-C-CAAATGCCATCTCTCAAGTTATTGA 2981
Query 3021 TAAAGAT--ATTACCGCGGCAGTAGCCAATGACTTAGCTGCTAGTGAGAGGAATGATGAA 3078
|| |||| ||| || ||||||| ||| ||| |||||||||||||||| |||||||||
Sbjct 2982 TACAGATGAATT--TGCTGCAGTAGGCAACGACGTAGCTGCTAGTGAGAGTAATGATGAA 3039
Query 3079 GTGATTCTGAAACTTGATGAGCAAGTTGGAGAAGCTATGGAAAAGGAACTAGAGCTTAAT 3138
| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 3040 GAAATTCTGAAACTTGATGAGCAAGATGGAGTAGCTATGGAAAAGGAACTAGAGCTTAAT 3099
Query 3139 TTAGAATCACTGCACCATAATATTGGTTTAGTCGGTAGAGAAGACGATGAAGAATCCAAG 3198
|||||||||||||| ||||| | ||||||||||| |||||||||||||||||||||||||
Sbjct 3100 TTAGAATCACTGCATCATAACACTGGTTTAGTCGCTAGAGAAGACGATGAAGAATCCAAG 3159
Query 3199 AAAGTAATAGAGGAAATGCAAAATGC-GGAGATCCAAACAACAAAACACGAAAACAGAGT 3257
|||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||
Sbjct 3160 AAAGTAATAGAGGAAATGCAAAATGCAGG-GATCCAAACAACAAAAGACGAAAACAGAGT 3218
Query 3258 CTTAGGTTAG 3267
||||||||||
Sbjct 3219 CTTAGGTTAG 3228
Score = 209 bits (113), Expect = 9e-53
Identities = 155/176 (88%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 2670 TGGAAACGCAGAAAATGCTAGTGATGTGTTACTTCTGCAAGTCCAAGATGGTAATAACTC 2729
|||||||| ||||||||||||||||||| ||||||||||| | |||||| ||||||||||
Sbjct 2499 TGGAAACGAAGAAAATGCTAGTGATGTGATACTTCTGCAATTTCAAGATAGTAATAACTC 2558
Query 2730 ACCACTAGATGAGTCAACTGATCAGGAGATTTCTAAGGAAGAAGAAAAAACAGAGGTATT 2789
|||||||||||||||||||||||||||| | |||||||||| ||||||||||||| ||||
Sbjct 2559 ACCACTAGATGAGTCAACTGATCAGGAGGTCTCTAAGGAAGGAGAAAAAACAGAGTTATT 2618
Query 2790 GAAAGATTTTAATGATGAAACGCCCCAAGGATACAAAAATAGAGCCAATGTTGAGG 2845
| |||||||| | | |||| | | ||| ||||||||||||||| |||| |||||
Sbjct 2619 GGAAGATTTTTACGGTGAATCTTCTGAAGTATACAAAAATAGAGCGAATGCTGAGG 2674
> Ahg342640 jgi|Araly1|342640|fgenesh1_pg.C_scaffold_3002403
Length=3051
Score = 3843 bits (2081), Expect = 0.0
Identities = 2553/2775 (92%), Gaps = 55/2775 (2%)
Strand=Plus/Plus
Query 1 ATGGGCATTGACACGAAAGAGATCATCGTTATATTATGGAAAATTCTTGGATATTCGATG 60
|||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGGCATTGCCGCGAAAGAGATCATCGTAATATTATGGAAAATTCTTGGATATTCGATG 60
Query 61 AACATGAGCATCAAATTCATGATAAACCACCCGGTTTTGTCAGGGGTTTCAATGTTTTTA 120
|||||||||||||||||||||| ||||||||| | |||||| |||||||||||||||||
Sbjct 61 AACATGAGCATCAAATTCATGAGAAACCACCCAATATTGTCAAGGGTTTCAATGTTTTTA 120
Query 121 CTCGTGCTATACATTTTCCTCCCTTCTCTGTTCTTCTTCTTGATCTA-TACATCACCGGT 179
|| ||||||||||||||||||||| |||| || ||||||||||| || | | ||||||||
Sbjct 121 CTTGTGCTATACATTTTCCTCCCTACTCTCTTGTTCTTCTTGATTTACT-CGTCACCGGT 179
Query 180 TCTTGCATGTGCTCTAGTGTATGCCCGAGAAAAGCTAGGGTTAAGATTCTCAAGTTCGTA 239
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 180 TCTTGCATGTGCTCTAGTGTATGCACGAGAAAAGCTAGGATTAAGATTCTCAAGTTCGTA 239
Query 240 TTCAGAGCCAAAGAAGAGTTGTGGAGGAGAAAAGAGATGCCATTTAAAACAACAACGAAG 299
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 240 TTCAGAGCCAAAGAAGAGTTGTGGTGGAGAAAAGAGATGTCATTTAAAACAACAACGAAG 299
Query 300 TGTTAGACGAAATGCTCGAATGAAAGTTGAAGAATGGGATTCACAGACAAGCGAAGAAGA 359
||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 300 TGTCCGACGAAATGCTCGAATGAAAGTTGAAGAATGGGATTCACAAACAAGCGAGGAAGA 359
Query 360 GAAAGACAAAGTTATCTTGACTTCTCTTTACAATGATCTCCTTGGTCGTACTCCTCAATT 419
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 360 GAAAGACAAAGTTATCTTGACTTCTCTTTACAATGACCTCCTTGGTCGTACTCCTCATTT 419
Query 420 CGAAGAGTCTCCAAAAGCTTTAGAAACCAATGTAGTAGAGGAAGAAGAAGACAAAGAGAA 479
||| |||||||||||||||||||||||||||||||||||||||| | || |||| |||||
Sbjct 420 CGAGGAGTCTCCAAAAGCTTTAGAAACCAATGTAGTAGAGGAAG-A-AA-ACAATGAGAA 476
Query 480 GGAGTTTCTTGGAGAGGGAGTTTCTCGTGATTTGGGTCATCTCAACGTTGAAGAACCAAT 539
||||||||||||||||| || |||||||||||| ||||| || |||||||||||||||||
Sbjct 477 GGAGTTTCTTGGAGAGGAAGATTCTCGTGATTTAGGTCAACTTAACGTTGAAGAACCAAT 536
Query 540 GGTTTGCAACTGTGAGATCAAATATGGAGAATCAGATGGTAAAGTAGAGATGAAACAGGA 599
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 537 GGTTTGCAACTGTGAGATCAAATATGGAGAATCAGATGGTAAAGAAGAGATGAAAGAGGA 596
Query 600 GATGAGTAATGCTAATGAGCATGGGATTTCAGAGATTGAGAGAAATAAGAGACTAGAG-T 658
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 597 GATGAGTAATGTTAATGAGCAGGGGATTTCAGAGATTGAGAGAAATAAGAGACTAGAGAG 656
Query 659 CTTTAATCGCTAGAAGAAGAGCGAGGAGACGCTTTAGACTAGCTTTAGATCAAAAGAATA 718
| ||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 657 C-TTAATAGCTAGAAGAAGAGCGAGGAGACTCTTTAGACTAGCTTTAGATCAAAGGAATA 715
Query 719 AGCTTCAAGCTGAAGAAACAACTAGCCCTAGACAGAACAACACCAACAACCTTCACGTTA 778
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 716 AGCTTCAAGCTGAAGAAACAACTAGCCCTAGACAGAACAACACCAACAGCCTTCACGTTA 775
Query 779 CGGTTTCGAGGAACTCACTTGAAAAACGTCGAAATAATTCATCAGATGGTACTACTGTTA 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 CGGTTTCGAGGAACTCACTTGAAAAACGTCGAAATAATTCATCAGATGGTACTACTGTTA 835
Query 839 AAGGATTACAGATTCCAGGCTCAGCTCCTTCTGTGATGTTACAAGGAAGAAACCCTTTTG 898
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 836 AAGGATTACCGATTCCAGGCTCAGCTCCTTCTGTGTTGTTACAAGGAAGAAACCCTTTTG 895
Query 899 ACATTCCTTATGATCCTCAAGAAGAAAGACCTAATCTTACTGGAGATAGCTTTGATCAAG 958
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 ACATACCTTATGATCCTCAAGAAGAAAGACCTAATCTTACTGGAGATAGCTTTGATCAAG 955
Query 959 AGTTTTCATTGTTTAATCAAAAAGATTTGTTCTTTTGTCGTCATGAGAGCTTCTGTCGTT 1018
| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 956 AATTTTCATTGTTTAATCAGAAAGATATGTTCTTTTGTCGTCATGAGAGCTTCTGTCGTT 1015
Query 1019 TTTCTCTGTTCTCACCAGAACATGTTCAGTGTATGAACAGCCCAGTTTCTGCTTCAGACA 1078
|| ||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1016 TTGCTCTGTTTTCACCAGAACATGCTCAATGTATGAACAGCCCAGTTTCTGCTTCAGACA 1075
Query 1079 TTTCAACTACTAGGAAACGTTTAGATTTGGAGAATGAATATATTGATCATACTGAACAAA 1138
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1076 TTTCAACTACTAGGAAACGTTTAGATTTGGACAATGAATATATGGATCATACTGAACAAA 1135
Query 1139 ATCTCCCAT-TAAATGGAAAAGAAGCTACAATAGAAGACGATGATAAAAGCGTTGTGAGT 1197
||||||||| | |||||||| | |||||||||||||||||| ||||||||||||||||||
Sbjct 1136 ATCTCCCATGT-AATGGAAAGGGAGCTACAATAGAAGACGACGATAAAAGCGTTGTGAGT 1194
Query 1198 CGAAAAAGCGAAGAAAAAGAGGTAGAAATGAATG---ATGAGACAGATTCAAACAAAGAA 1254
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 1195 GGAAAAAGCGAAGAAAGGGAGGTAGAAATGAATGATAATGAGACAGATTCAAACAAAGAA 1254
Query 1255 GAATGTGATGATTCAAGTTGTTCAGAAGAAAGTGAGTCAGAACT-ATGCCGTTTAAACAA 1313
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1255 GAATGTGATGATTCAAGTTGTTCAGAAGAAAGTGAGTCAGAACTCA-GCCGTTTAAACAA 1313
Query 1314 AGCGGAGCTCAGGGAAGCTATATGCCAATCCATGGACAACAATCCCGGTTATCTTGTGAA 1373
||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1314 AGCCGAGCTCAGGGAAGCTATATGCCAATCGATGGATAACAATCCCGGTTATCTTGTGAA 1373
Query 1374 TCAAGCAAGAAATAGTATTCCAAGCACATTACCTAGAGGTATAGTAGCGCCAAGACTAGA 1433
||| |||||||||||||||||| |||||| ||||||||| |||||||||||||||||||
Sbjct 1374 CCAAACAAGAAATAGTATTCCAACCACATTGCCTAGAGGTTTAGTAGCGCCAAGACTAGA 1433
Query 1434 TGATAACAACATGTTTTACGCTCGCAAATGTGGAAATTCGCACAGTCGAACATTTTCAGT 1493
|||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1434 TGATAACAACATGTTTTATGCTCGAAAATGCGGAAATTCGCACAGTCGAACATTTTCAGT 1493
Query 1494 TGCCTCGGATATGCAAGTTGAGGTTTCAGAGATTGGTTCACCTCCTACAACAGTTGATTG 1553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 TGCCTCGGATATGCAAGTTGAGGTTTCAGAGATTGGTTCACCTCCTACAACAGTTGATTG 1553
Query 1554 GCTTGATGACTGGTCTACTGGTGGTGAATCTTACATTTATGATACAGATATTGACAGAGA 1613
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1554 GCTTGATGACTGGTCTAATGGCGGTGAATCTTACATTTATGATACAGATATTGACAGAGA 1613
Query 1614 AATCGTCCGCGATGAAGAATCACGTAAGAGGATGTCTCATCAATATGAATCAAGAAGTGG 1673
||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 1614 AATCGTCCGCGATGAAGAATCACGTAAGAGGATCTCTCACCAGTATGAATCAAGAAGTGG 1673
Query 1674 AATAGGATCAAAAGAGGAGAATAGTGAGCCAAGTACTAAACCTGAGGCCAAACCAGATCA 1733
||||||||||||||||||||||| |||| || | ||||||||||||||||||||| ||||
Sbjct 1674 AATAGGATCAAAAGAGGAGAATAATGAGACATGGACTAAACCTGAGGCCAAACCAAATCA 1733
Query 1734 GGATTGTGTGGTAGATGAAGACCTTATAACAGTTGATGAT-AT--GTCATTGTTAGATAG 1790
| ||||||||||||||||| |||||||||||||||||||| || |||||||||||| ||
Sbjct 1734 GAATTGTGTGGTAGATGAAAACCTTATAACAGTTGATGATGATTTGTCATTGTTAGAAAG 1793
Query 1791 AAGAACCCAAAGTGAAGAGATTTTTGAGCAGACACCTTCTAGTTCCAGTGATGTGTCCAA 1850
||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1794 AAGAAGCCAAACCGAAGAGATTTTTGAGCAGACACCTTCTAGTTCCAATGATGTGTCCAA 1853
Query 1851 GCCTACAAGTTCTGGGAGATTTGAAGGTATGTTGTTCCATACAAGTGCCTCATTGTCGTC 1910
||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1854 GCCTACAAGCTCTGGGAAATTTGAAGGTATGTTGTTCCATACAAGTGCGTCATTGTCGTC 1913
Query 1911 TATAACAGAAGAACCTGAAACAATCTTGGATTCGATCGATGGCGTCAACTCGGAGATTAT 1970
|||||||||||| ||||||||||||||||| ||||||||||| | ||||||||||| | |
Sbjct 1914 TATAACAGAAGAGCCTGAAACAATCTTGGACTCGATCGATGGGGGCAACTCGGAGAATCT 1973
Query 1971 GAATAGTTTGACTGGAGAA-TTAACTGACCAGAGACCTCTGACTAGTCTTGATTTATCCA 2029
||||| |||||||| |||| ||| ||||||||||||||||||||| ||| |||| |||||
Sbjct 1974 GAATAATTTGACTGAAGAACTTA-CTGACCAGAGACCTCTGACTACTCTGGATTCATCCA 2032
Query 2030 TGGAGAATTTGATAGATGAAGAAGTTGCTGATATGCAACAAATAGAAAATGATGATCTTT 2089
|| |||| ||||| ||||||||||| |||||| || ||||| ||||||||||||||||||
Sbjct 2033 TGAAGAAATTGATTGATGAAGAAGTGGCTGATGTGAAACAAGTAGAAAATGATGATCTTT 2092
Query 2090 GTGGATCTCCTAAGATTATTGATTTTGATATCATTGATCATCAGCAGACAGATCAAACGT 2149
||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||| |
Sbjct 2093 GTGGATCTCCTAAGATTATTGATTTAGATATCATTGATCATCAGCAGAAAGACCAAATG- 2151
Query 2150 CGGA-TAGCATTCAAGGAGAACATGAGGAAACTAAGAGCTTCTTGGATGCTTCTTTGGAC 2208
| || |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 2152 CTGAGTAGCATTCAAGGAGAACATGGGGAAACTAAGAGCTTTTTGGATGCTTCTTTGGAC 2211
Query 2209 ACACCCTTTATAGAATCATTTGAGAGAGAGGTACAAGAAGAAGAAGAATCAAACTTAGAC 2268
||| ||| |||||||||||||||||||||| || ||| ||||||||||||||||||||||
Sbjct 2212 ACATCCTATATAGAATCATTTGAGAGAGAGTTAGAAGGAGAAGAAGAATCAAACTTAGAC 2271
Query 2269 AAGTCT-ACTGAGGAAACAACAAAAGAAACAGAAAGTGA--T---T-----TGA---AGA 2314
||| || ||| |||||||||||||| ||||||||| ||| | | ||| |||
Sbjct 2272 AAG-CTTACTAAGGAAACAACAAAACAAACAGAAAATGAGGTACATCAAAGTGATTTAGA 2330
Query 2315 G--TTCTCCGGGACAAGTTTCT-ACAGAATTACTAGAAAGTGTGGTAAGGGAAGAGAATG 2371
| |||||| | |||||| || ||||||||||||| ||||| | | | |||||||||||
Sbjct 2331 GAGTTCTCCATGCCAAGTT-CTTACAGAATTACTAGTAAGTGAGATTATGGAAGAGAATG 2389
Query 2372 GTCAGGAATTAGTCAA-AAGTGCTGATGAGAAAGCAATG-CTAGTAGAGGAAGAGAAGAC 2429
|||||||||||| || ||| | |||||| ||| | | |||||| |||||||| ||
Sbjct 2390 GTCAGGAATTAG--AAGAAGA----A-GAGAAACCAAGGTC-AGTAGAAGAAGAGAAAAC 2441
Query 2430 TCATAATGTCTTGGAAGCATCTTCGAGCAATGCTCATACACAGTTGGTTGATTTAGACTA 2489
||||||||| |||||| |||||||||| |||||||||||||||||||||| ||| ||
Sbjct 2442 TCATAATGTGGTGGAAGAATCTTCGAGCCATGCTCATACACAGTTGGTTGA---AGATTA 2498
Query 2490 TGGAAACGCAGAAAATTCTAGTGATGTGATACTTCTGCAAGTCCAAGATAGTCATAAGTC 2549
|||||||| ||||||| ||||||||||||||||||||||||| ||||||||| |||| ||
Sbjct 2499 TGGAAACGAAGAAAATGCTAGTGATGTGATACTTCTGCAAGTTCAAGATAGTAATAACTC 2558
Query 2550 ACCACTAGATGAGTCAGTTGATCAGGAGATCTCTAAGGAAGTAGAAAAAACAGAGTTATT 2609
|||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||
Sbjct 2559 ACCACTAGATGAGTCAACTGATCAGGAGGTCTCTAAGGAAGGAGAAAAAACAGAGTTATT 2618
Query 2610 AAAAGATTTTTGTGGTGAATCAACCCAAGAATACAAAAATAGAG-GAAATGTTGAGGCCT 2668
||||||||| |||||||| | ||| |||||||||||||| ||| || ||||| ||
Sbjct 2619 GGAAGATTTTTACGGTGAATCTTCTGAAGTATACAAAAATAGAGCGAA-TGCTGAGGTCT 2677
Query 2669 GTGGAAACGCAGAAAATGCTAGTGATGTGTTACTTCTGCAAGTCCAAGATGGTAATAACT 2728
||||||||||||||| |||||||||||| | ||||||||||||||||||||||| |||
Sbjct 2678 ATGGAAACGCAGAAAACGCTAGTGATGTGACATTTCTGCAAGTCCAAGATGGTAATTACT 2737
Query 2729 CACCACTAGATGAGT 2743
|||||| ||||||||
Sbjct 2738 CACCACGAGATGAGT 2752
Score = 327 bits (177), Expect = 2e-88
Identities = 251/285 (88%), Gaps = 12/285 (4%)
Strand=Plus/Plus
Query 2782 GAGGTATTGAAAGATTT-TAATGATGAAACGCCCCAAGGATACAAAAATAGAGCCAATGT 2840
||| ||||||||||||| | |||||||| || |||||| ||||||||||||||| |||||
Sbjct 2749 GAGTTATTGAAAGATTTCT-ATGATGAATCGTCCCAAGAATACAAAAATAGAGCTAATGT 2807
Query 2841 TGAGGAAGAATCAGTAGTTTTAGCTGACACTCAAAACTCACAAGATTCACAAACATGGAC 2900
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2808 TGAGGAAGAATCAGTAGTTTTAGCCAACACTCAAAACTCACAAGATTCACAAACATGGAC 2867
Query 2901 TCAACAGTGTGGTATAGATTCTTCCCAAGGGATATCACCAAGAACATTGGAGATCACCCA 2960
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2868 TCAACAGTGTGGTATAGATTCTTCCCAAGGGATATCACCAAGAACGTTGGAGATCACCCA 2927
Query 2961 GCAACTAGAGCAAGACGATGTTATTGCCTCTTCCTCAAACACCGTCTCTCAAGATATCAA 3020
||||||||| ||||||||||||||| || | ||| || ||||||||| ||| |
Sbjct 2928 ACAACTAGAGAAAGACGATGTTATTGA-TC--C---AAATGCCATCTCTCAAGTTATTGA 2981
Query 3021 TAAAGAT-A-TTACCGCGGCAGTAGCCAATGACTTAGCTGCTAGT 3063
|| |||| | || || ||||||||||| ||| |||||||||||
Sbjct 2982 TACAGATGAATTT--GCTGCAGTAGCCAACGACGTAGCTGCTAGT 3024
Score = 215 bits (116), Expect = 2e-54
Identities = 156/176 (89%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 2670 TGGAAACGCAGAAAATGCTAGTGATGTGTTACTTCTGCAAGTCCAAGATGGTAATAACTC 2729
|||||||| ||||||||||||||||||| ||||||||||||| |||||| ||||||||||
Sbjct 2499 TGGAAACGAAGAAAATGCTAGTGATGTGATACTTCTGCAAGTTCAAGATAGTAATAACTC 2558
Query 2730 ACCACTAGATGAGTCAACTGATCAGGAGATTTCTAAGGAAGAAGAAAAAACAGAGGTATT 2789
|||||||||||||||||||||||||||| | |||||||||| ||||||||||||| ||||
Sbjct 2559 ACCACTAGATGAGTCAACTGATCAGGAGGTCTCTAAGGAAGGAGAAAAAACAGAGTTATT 2618
Query 2790 GAAAGATTTTAATGATGAAACGCCCCAAGGATACAAAAATAGAGCCAATGTTGAGG 2845
| |||||||| | | |||| | | ||| ||||||||||||||| |||| |||||
Sbjct 2619 GGAAGATTTTTACGGTGAATCTTCTGAAGTATACAAAAATAGAGCGAATGCTGAGG 2674
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 123306536520
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5