BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58890.1
Length=885
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950614 jgi|Araly1|950614|scaffold_802501.1 1238 0.0
Ahg357809 jgi|Araly1|357809|fgenesh1_pg.C_scaffold_8001596 137 1e-31
> Ahg950614 jgi|Araly1|950614|scaffold_802501.1
Length=922
Score = 1238 bits (670), Expect = 0.0
Identities = 799/861 (93%), Gaps = 9/861 (1%)
Strand=Plus/Plus
Query 19 GACCTACAAAGGATAGCGAACGATAAGACAAGGATAACAACTTACAAGAAGAGGAAAGCT 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 39 GACCTACAAAGGATAGCGAACGATAAGACAAGGATAACAACTTACAAGAAGAGGAAAGCT 98
Query 79 AGTCTTTACAAGAAGGCACAAGAGTTCTCAACTCTCTGCGGCGTCGAGACATGTCTCATC 138
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 99 AGTCTTTACAAGAAGGCACAAGAGTTCTCAACTCTCTGCGGCGTCCAGACATGTCTCATC 158
Query 139 GTCTACGGTCCCACGAAGGCTACCGATGTGGTGATTTCCGAGCCAGAGATATGGCCGAAG 198
|||||||||||||||||||||||||||| |||| || ||||||||||||||||||||| |
Sbjct 159 GTCTACGGTCCCACGAAGGCTACCGATGAGGTGGTTCCCGAGCCAGAGATATGGCCGAGG 218
Query 199 GACGAGACCAAAGTCAGGGCCATCATACGCAAGTACAAAGACACAGTGTCGACCAGCTGC 258
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 219 GACGAGACCAACGTCAGGGACATCATACGCAAGTACAAAGACACAGTGTCGACCAGCTGC 278
Query 259 AGGAAAGAAACCAACGTGGAGACTTTCGTCAACGATGTAGGGAA-AGGAAACGAGGTGGT 317
|| |||||||||||||||||||||||||| |||||| |||| || | |||||||||||
Sbjct 279 AGAAAAGAAACCAACGTGGAGACTTTCGTTAACGATTTAGGTAAGAC-AAACGAGGTGGA 337
Query 318 GACTAAAAAGAGAGTGAAGCGTGAGAATAAGTATTC-TAGTTGGGAGGAGAAGCTAGACA 376
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 338 GACTAAAAAGAGAGTGAAGCGTGAGAATAAGTAT-CGTAGTTGGGAGGAGAAGCTAGACA 396
Query 377 AGTGTTCACGAGAGCAACTACATGGGATTTTCTGTGCCGTGGATAGCAAGTTAAATGAAG 436
|||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||
Sbjct 397 AGTGTTCACGAGAGCAACTACATGAGATTTTCTGTGCCGTGGATAAAAAGTTACATGAAG 456
Query 437 CTGTAACGAGACAGGAGCGTAGTATGTTTAGGGTTAATCATCAAGCCATGGACACACCAT 496
|||||| ||||||||| | |||||||| ||||||| |||||||||||||||||||||||
Sbjct 457 CTGTAATGAGACAGGATCTTAGTATGTATAGGGTTCATCATCAAGCCATGGACACACCAA 516
Query 497 TCCCGCAGAATTTAATGGACCAACAATTCATGCCACAGTATTTTCATGAGCAGCCACAGT 556
||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 517 TCCCGCAGAATTTTATGGATCAACATTTCATGCCACAGTATTTTCATGAGCAGCCACAGT 576
Query 557 TTCAAGGCTTCCCTAATAA-TTTCAATAATATGGGTTTCTCGTTGATTTCACCTCATGAT 615
||||||||||||| ||||| ||| |||||||||||||||||||| || || |||||||||
Sbjct 577 TTCAAGGCTTCCCCAATAACTTT-AATAATATGGGTTTCTCGTTAATCTCGCCTCATGAT 635
Query 616 GGTCAGATTCAAATGGACCCAAATCTCATGGAGAAGTGGACCGACTTGGCTTTGACTCAA 675
||||||||||||||||||||||||||||||||||| |||| ||||| ||||| || |||
Sbjct 636 GGTCAGATTCAAATGGACCCAAATCTCATGGAGAACTGGAGAGACTTAGCTTTAACACAA 695
Query 676 AGCTTGATGATGTCAAAGGGAAACGATGGTACTCAATTCATGCAGAGGCAAGAACAACCA 735
||||||||||||||||||||||||| |||||||||||| ||||||| ||||| ||||||
Sbjct 696 AGCTTGATGATGTCAAAGGGAAACGCTGGTACTCAATTGATGCAGATGCAAGCACAACCT 755
Query 736 TACTATAATCGTGAACAGGTTGTATCGAGGTCTGCAGGTTTCAATGTTAACCCGTTTATG 795
|| || |||||||||| | ||||| |||||||||| |||||||||||||| ||||| | |
Sbjct 756 TATTACAATCGTGAACCGATTGTACCGAGGTCTGCGGGTTTCAATGTTAATCCGTTAACG 815
Query 796 GGATATCAAGTCCCGTTTAATATTCCTAATTGGAGATTATCGGGAAATCAAGTTGAAAAT 855
||||||||||||||||||||||||||| | |||| ||||||||||||||||||||| ||
Sbjct 816 GGATATCAAGTCCCGTTTAATATTCCT--T-GGAGGTTATCGGGAAATCAAGTTGAAGAT 872
Query 856 TGGGAGCTTTCAGGGAAGAAA 876
|||||||| ||||||||||||
Sbjct 873 TGGGAGCTATCAGGGAAGAAA 893
> Ahg357809 jgi|Araly1|357809|fgenesh1_pg.C_scaffold_8001596
Length=1533
Score = 137 bits (74), Expect = 1e-31
Identities = 181/231 (78%), Gaps = 14/231 (6%)
Strand=Plus/Plus
Query 36 GAACGATAAGACAAGGATAACAACTTACAAGAAGAGGAAAGC-TAGTCTT-TACAAGAAG 93
|||||| || || ||||||||||||||||||||||||||||| | || || || |||||
Sbjct 24 GAACGAGAAAACGAGGATAACAACTTACAAGAAGAGGAAAGCAT-GT-TTGTATAAGAAA 81
Query 94 GCACAA-GAGTTCTCAACTCTCTGCGGCGTCGAGACATGTCTCATCGTCTACGGTCCC-A 151
|| || ||||||||||| ||||||||||| || || |||||||| || ||||| ||| |
Sbjct 82 GC-CAGTGAGTTCTCAACACTCTGCGGCGTGGACACTTGTCTCATTGTGTACGG-CCCGA 139
Query 152 CGAAG-GCTACCG-ATGTGGTGATTTCCGAGCCAGAGATATGGCCGAAGGACGAGACCAA 209
| || || | | ||| | || | | ||||||||| ||||||| ||||| |||| ||
Sbjct 140 -GCAGAGC-AGGGGATGAGATGGTCGCGGAGCCAGAGCTATGGCCAAAGGATGAGAGGAA 197
Query 210 AGTCAGGGCCATCATA-CGCAAGTACAAAGACACAGTGTCGACCAGCTGCA 259
|||| | | |||||| | |||||||| ||||| ||||| | || |||||
Sbjct 198 AGTCCGTGAAATCATAAC-CAAGTACAGGGACACTGTGTCAAGCAACTGCA 247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32785708620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5