BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58900.1
Length=1686
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496013 jgi|Araly1|496013|fgenesh2_kg.8__1829__AT5G58900.1 1613 0.0
Ahg349486 jgi|Araly1|349486|fgenesh1_pg.C_scaffold_6000079 167 3e-40
> Ahg496013 jgi|Araly1|496013|fgenesh2_kg.8__1829__AT5G58900.1
Length=1589
Score = 1613 bits (873), Expect = 0.0
Identities = 1026/1100 (93%), Gaps = 9/1100 (1%)
Strand=Plus/Plus
Query 582 AAAATTCGTAAATCCGTTGACCTTTGTCGGCATGATTTGTTCTTACTTACCGTaaaaaaa 641
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 497 AAAATTCGTAAATCCGTTGACCTTTGTCGGTATGATTTGTTCTTACTTATCGTAAAAAAA 556
Query 642 aCAGAGCTAGGTTTTAGTTTTCGGACATGGAGGTTATGAGACCGTCGACGTCACACGTGT 701
||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||
Sbjct 557 ACAGAGCTAGGTTTTAGTTTTCGGACATGGAGGTTCTGAGGCCGACGACGTCACACGTGT 616
Query 702 CAGGTGGGAACTGGCTCATGGAGGAAACTAAGAGCGGCGTCGCAGCTTCTGGTGAAGGTG 761
| |||||||||||||| ||||| || |||||||||| ||||||||||||||| |||||||
Sbjct 617 CCGGTGGGAACTGGCTTATGGATGAGACTAAGAGCGCCGTCGCAGCTTCTGGCGAAGGTG 676
Query 762 CCACGTGGACGGCGGCAGAGAACAAGGCATTCGAGAATGCTTTGGCGGTTTACGACGACA 821
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 CCACGTGGACGGCGGCGGAGAACAAGGCATTCGAGAATGCTTTGGCGGTTTACGACGACA 736
Query 822 ACACTCCTGATCGGTGGCAGAAGGTGGCTGCGGTGATTCCGGGGAAGACAGTGAGTGACG 881
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 737 ACACTCCTGATCGGTGGCAGAAGGTGGCGGCGGTGATTCCGGGGAAGACCGTGAGTGACG 796
Query 882 TAATTAGACAGTATAACGATTTGGAAGCTGATGTCAGCAGCATCGAGGCCGGTTTAATCC 941
| ||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 797 TCATTAGACAGTACAACGATCTGGAAGCTGACATCAGCAGCATCGAGGCCGGTTTAATCC 856
Query 942 CGGTCCCCGGTTACATCACCTCGCCGCCTTTCACTCTAGATTGGGCCGGCGGCGGTGGCG 1001
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 857 CGGTCCCGGGTTACATCACCTCGCCGCCTTTCACTCTAGATTGGGCCGGTGGCGGT---- 912
Query 1002 GATGTAACGGGTTTAAACCGGGTCATCAGGTTTGTAATAAACGGTCGCAGGCCGGTAGAT 1061
||||||||||| ||||||||||||||||||||||| |||||||| | |||||||||||
Sbjct 913 --TGTAACGGGTTCAAACCGGGTCATCAGGTTTGTAACAAACGGTCTCCGGCCGGTAGAT 970
Query 1062 CGCCGGAGCTGGAGCGGAAGAAAGGCGTTCCTTGGACGGAGGAAGAACACAAGCTATTTC 1121
||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 971 CGCCGGAACTGGAGAGGAAGAAAGGCGTTCCTTGGACGGAAGAAGAACACAAGCTATTTC 1030
Query 1122 TAATGGGTTTGAAGAAATATGGGAAAGGAGATTGGAGAAACATATCTCGGAACTTTGTGA 1181
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1031 TAATGGGTTTGAAGAAATACGGGAAAGGAGATTGGAGAAACATATCTCGGAACTTTGTGA 1090
Query 1182 TAACGCGAACGCCAACACAAGTAGCTAGCCACGCCCAAAAGTACTTCATCCGGCAACTTT 1241
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1091 TAACGCGAACGCCAACACAAGTCGCTAGCCACGCCCAAAAGTACTTTATCCGGCAACTTT 1150
Query 1242 CCGGCGGCAAGGACAAGAGACGAGCAAGCATTCACGACATAACCACCGTAAATCTCGAAG 1301
| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1151 CTGGCGGCAAGGACAAAAGACGAGCAAGCATTCACGACATAACCACCGTGAATCTCGAAG 1210
Query 1302 AGGAGGCTTCTTTGGAGACCAATAAGAGCTCCATTGTTGTTGGAGATCAGCGTTCAAGGC 1361
| || || |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1211 ACGAAGCCTCTTTGGAGACCAATAAGAGCTCCATTGTTGTTGGAGAGCAGCGTTCAAGGC 1270
Query 1362 TAACCGCGTTTCCTTGGAACCAAACGGACAACAATGGAACACAGGCAGACGCTTTCAATA 1421
||||||| ||||||||||||| |||||| ||||||||||| || ||||| |||||||| |
Sbjct 1271 TAACCGCATTTCCTTGGAACCCAACGGATAACAATGGAACGCATGCAGATGCTTTCAACA 1330
Query 1422 TAACGATTGGAAACGCTATTAGTGGCGTTCATTCATACGGCCAGGTTATGATTGGAGGGT 1481
||| ||||||||||||||||| ||||||||| || ||||| |||||| || |||||||||
Sbjct 1331 TAAGGATTGGAAACGCTATTAATGGCGTTCACTCGTACGGTCAGGTTCTGCTTGGAGGGT 1390
Query 1482 ATAACAATGCAGATTCTTGCTATGACGCCCAAAACACAATGTTTCAACTATAGCTAATGA 1541
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1391 TTAACAATGCAGATTCTTGCTATGACGCGCAAAACACAATGTTTCAACTATAGCTAATGG 1450
Query 1542 AG-ATCCATCTCTCTAATTAAAAAGTGTAAGTTAAATTCTTAATTTTTCATATGGACGAA 1600
| || |||||||||||||||| |||||||| ||| |||||||||||||||||||||||
Sbjct 1451 ATCATGCATCTCTCTAATTAAAGGGTGTAAGTGAAAATCTTAATTTTTCATATGGACGAA 1510
Query 1601 ACAATCATATTTGGCAATTGTATAATAAACGTCCATTGTTTTAATTCCAAATTGAAATAG 1660
|||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||
Sbjct 1511 ACAATCATATTTGGTAACTGTACAATAAACGTCCATTGTTTTAATTCCAAATTGAAATAG 1570
Query 1661 TTA-ATAAAAGTCTCTTGAC 1679
| | ||||||||||| ||||
Sbjct 1571 T-AGATAAAAGTCTCGTGAC 1589
Score = 566 bits (306), Expect = 2e-160
Identities = 392/430 (91%), Gaps = 20/430 (5%)
Strand=Plus/Plus
Query 129 tttttttCATTTTCTGTAGCCATATGTTTATTTTCCCGAGAAATATTATCCACACCCAGA 188
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 87 TTTTTTTCATTTTCTGTAGCCATATGTTTATTTTCCCGAGAAATATTATCCACACCCAGC 146
Query 189 TCTTTAAATCTCTTTTAACTCTGAGTCTCTGATACTTAAATACCACTCATGCTGCTTATT 248
| ||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||
Sbjct 147 TTTTTAAATCTCTTT-AACTCTGAGTCTCTGATACTTAAATACCACTCATGCT--T-ATT 202
Query 249 AGCTCCACCAAATCTGGAAAACCAATAGATTCTTTTTATTTCTTCTGCAAAAATCTCAGA 308
|||||||||||||||||||||||||||||||| |||| |||||| |||||||
Sbjct 203 AGCTCCACCAAATCTGGAAAACCAATAGATTCGTTTT---------GCAAAA-TCTCAGA 252
Query 309 GCTACCCTAAAAATTCTCTCTTTTTGACTCACTTACCAGATCTCCACTAGATTTTACTCA 368
||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||
Sbjct 253 GCTACCCTAAAAATTCTCTCTTTTTGACTCACTAACCAGATTTCGACTAGATTTTACTCA 312
Query 369 ATTCTTTTTCAAAAGGTTTAAACTTTTATAGATTCCTTGAAGTGGGT------CTAAGCA 422
|||| ||| ||||||| | |||||||||||||||||||||||||||| |||||||
Sbjct 313 ATTCATTTGCAAAAGGATAAAACTTTTATAGATTCCTTGAAGTGGGTGTGGGTCTAAGCA 372
Query 423 ATGCTTCAGAGAAATTCCGATGATTTCTTCTCTAACCAAAATAAAAATGAAGTATCATTT 482
|||||||| ||||||||| ||| |||||||||||| |||||||||| |||||||||||||
Sbjct 373 ATGCTTCAAAGAAATTCCTATGGTTTCTTCTCTAAACAAAATAAAAGTGAAGTATCATTT 432
Query 483 GATAGTGATTTTTGTGTTCTTCTTTTGATTCTCTTATCTCTTCCTTCCCATCAATAAACC 542
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 433 GATAGTGATTTTTGTGTTCTTCCTTTGATTCTCTTATCTCTTTCTTCCCATCAATAAACC 492
Query 543 CaaaaaaaTT 552
|||||||||
Sbjct 493 AAAAAAAATT 502
Score = 143 bits (77), Expect = 5e-33
Identities = 83/86 (97%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 5 AAGTTTATAATCTGGTTTCTGATTTTAGTTTTCTTTCCATTTATGGGTTCATTTGCTTCT 64
||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1 AAGTTTATAATTTGGTTTCTGGTTTTAGTTTTCTTTCCATTTATGGGCTCATTTGCTTCT 60
Query 65 TCTTGCACGTTATAGTTTTCCTAATT 90
||||||||||||||||||||||||||
Sbjct 61 TCTTGCACGTTATAGTTTTCCTAATT 86
> Ahg349486 jgi|Araly1|349486|fgenesh1_pg.C_scaffold_6000079
Length=795
Score = 167 bits (90), Expect = 3e-40
Identities = 190/237 (80%), Gaps = 11/237 (5%)
Strand=Plus/Plus
Query 1059 GATCGCCGGAGCTGGAGCGGAAGAAAGGCGTTCCTTGGACGGAGGAAGAACA-CAAGCTA 1117
||| |||||| |||| |||||||||| ||||| ||||| ||||| ||||| | | |||
Sbjct 408 GAT-GCCGGAAAAGGAGAGGAAGAAAGGAGTTCCGTGGACTGAGGACGAACACCTA-CTA 465
Query 1118 TTTCTAATGGGTTTGAAGAAATATGGGAAAGGAGATTGGAGAAACATATCTCGGAA-CTT 1176
|||||||||||||||||||||||||| ||||||||||||||||||||| | || |||
Sbjct 466 TTTCTAATGGGTTTGAAGAAATATGGAAAAGGAGATTGGAGAAACATAGCAAA-AAGCTT 524
Query 1177 TGTGATA-ACGCGAACGCCAACACAAGTAGCTAGC-CACGCCCAAAAGTACTT-CATCCG 1233
||||| | || || ||||| || ||||| ||| | ||||| ||||| || || | || |
Sbjct 525 TGTGA-AGACTCGGACGCCGACGCAAGTCGCTT-CACACGCTCAAAAATATTTTCTTC-G 581
Query 1234 GCAACTTTCCGGCGGCAAGGACAAGAGACGAGCAAGCATTCACGACATAACCACCGT 1290
||||| | | || || ||||| |||||| ||||||||||||| || ||||||||
Sbjct 582 ACAACTCACAGATGGTAAAGACAAAAGACGATCAAGCATTCACGATATCACCACCGT 638
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63229806700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5