BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G58910.1 Length=1572 Score E Sequences producing significant alignments: (Bits) Value Ahg496014 jgi|Araly1|496014|fgenesh2_kg.8__1830__AT5G58910.1 2510 0.0 Ahg920739 jgi|Araly1|920739|scaffold_102020.1 65.8 9e-10 > Ahg496014 jgi|Araly1|496014|fgenesh2_kg.8__1830__AT5G58910.1 Length=1572 Score = 2510 bits (1359), Expect = 0.0 Identities = 1502/1573 (95%), Gaps = 2/1573 (0%) Strand=Plus/Plus Query 1 ATGACGAACACCACGAAGCTGTGCTCGTCGAAGCCTATAGTCACCGTCAATGGACAA-TT 59 ||||||||||||||||||||||||||||||||||| || ||||||||||||||| || || Sbjct 1 ATGACGAACACCACGAAGCTGTGCTCGTCGAAGCCCATCGTCACCGTCAATGGA-AAGTT 59 Query 60 TCCGGGACCCACCATTGTTGCAAGAGAAGGCGACACTATTTTGATCAAAGTTGTGAATCA 119 |||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||| Sbjct 60 TCCGGGCCCCACCATTGTTGCAAGAGAAGACGACACTCTTTTGATCAAAGTTGTGAATCA 119 Query 120 CGTGAAGTACAACGTCTCCATCCACTGGACAGGTTGGGCAGATGGACCGGCTTACATAAC 179 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 CGTGAACTACAACGTCTCCATCCACTGGACAGGTTGGGCAGATGGACCGGCTTACATAAC 179 Query 180 ACAATGTCCTATCCAACCGGGACAGAATTATCTCCACAATTTTACATTGACGGGTCAACG 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 ACAATGTCCTATCCAACCGGGACAGAATTATCTCCACAATTTTACATTGACGGGTCAACG 239 Query 240 AGGAACCCTATGGTGGCATGCTCACATCTTGTGGCTTCGTGCTACGGTGCACGGCGCCAT 299 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 240 AGGAACCCTATGGTGGCATGCTCACATCTTGTGGCTTCGTGCCACGGTGCACGGCGCCAT 299 Query 300 TGTCATCTTGCCTAAGCTCGGTGTCCCATACCCTTTCCCTAAGCCCTACAAAGAGAAAAC 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 TGTCATCTTGCCTAAGCTCGGTGTCCCATACCCTTTCCCTAAGCCCTACAAAGAGAAAAC 359 Query 360 CATTGTCCTTAGTGAATGGTGGAAATCGGACGTGGAAGAACTCATAAACGAGGCTTCAAG 419 ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 360 AATTGTTCTTAGTGAATGGTGGAAATCGGACGTGGAAGAACTTATAAACGAGGCTTCAAA 419 Query 420 AATAGGAACAGCTCCTAGTGCTTCGGATGCACATACCATCAATGGTCATTCAGGCTCCAT 479 ||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 420 AATTGGAACAGCTCCTAGCGCTTCTGATGCACATACCATCAATGGTCATTCAGGCTCCAT 479 Query 480 CTCTAATTGTCCTTCCCAAAGTAGTTACGGTTTACCAGTGAGAGCAGGAAAGACATACAT 539 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 480 CTCTAATTGTCCTTCCCAAAGTAGTTACGGTTTACCGGTGAGAGCAGGAAAGACGTACAT 539 Query 540 GTTAAGGATCATCAACGCGGCGTTAAACGAAGAGCTCTTCTTTAAAATTGCTGGTCACGT 599 |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 540 GTTACGGATCATCAACGCGGCATTAAACGAAGAGCTCTTCTTTAAAATTGCTGGTCACGT 599 Query 600 ATTAACCGTTGTGGAAGTTGATGCTGTTTACACCAAACCGTATAAAACTGACACAGTATT 659 | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 ACTAACCGTTGTAGAAGTTGATGCTGTTTACACCAAACCGTATAAAACTGACACAGTATT 659 Query 660 CATAGCCCCGGGACAGACTACTAACGTTCTCTTAACAGCAAACGCAAACGCTGGTTCAAA 719 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 660 CATCGCCCCGGGACAGACTACTAACGTTCTCTTAACAGCAAACGCAAACGCTGGTTCCAA 719 Query 720 TTACATGGTCGCCGCCACAACATTTACGGACGCTCACATCCCATACGACAACGTCACAGC 779 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 720 TTACATGGTCGCCGCCACAACATTTACGGACGCTCAAATCCCATACGACAACGTCACAGC 779 Query 780 CACTGCCACCCTCCACTATATCGGTCACACTTCCACCGTTTCCACCTCCaaaaaaaCCGT 839 ||| ||||| |||||||| ||||| |||||| |||||||||| |||||||||| ||||| Sbjct 780 CACCGCCACTCTCCACTACATCGGCCACACTGCCACCGTTTCTGCCTCCAAAAAGACCGT 839 Query 840 TCTCGCATCACTTCCACCTCAAAACGCAACATGGGTTGCAACCAAATTCACTAGATCACT 899 ||||||||||||||| || ||||||||||| |||||||| |||||||||||||||||||| Sbjct 840 TCTCGCATCACTTCCGCCGCAAAACGCAACTTGGGTTGCGACCAAATTCACTAGATCACT 899 Query 900 CAGGAGCTTAAACTCCCTCGAGTATCCAGCTAGGGTTCCAACAACCGTGGAACATTCCTT 959 | ||||||| ||||||| ||||||||| ||||||||||||||||||||||| |||||||| Sbjct 900 CCGGAGCTTGAACTCCCGCGAGTATCCGGCTAGGGTTCCAACAACCGTGGACCATTCCTT 959 Query 960 GTTCTTCACGGTAGGTCTTGGTGCAAACCCTTGCCAGAGTTGCAACAACGGTGTTCGCTT 1019 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 960 GTTCTTCACGGTAGGTCTTGGTGCAAACCCTTGCCAGAGCTGCAACAACGGTGTTCGCTT 1019 Query 1020 AGTGGCCGGAATAAACAACGTAACGTTTACCATGCCTAAAACCGCTTTACTCCAGGCTCA 1079 ||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||| Sbjct 1020 AGTGGCCGGAATAAACAACGTAACGTTTACCATGCCTGAGACCGCTTTGCTCCAGGCTCA 1079 Query 1080 TTTCTTTAACATTTCCGGCGTATTTACCGACGACTTCCCGGCGAAACCTTCCAATCCGTA 1139 ||||||||||||||||||||| |||||||| |||||||||||||| || || |||||||| Sbjct 1080 TTTCTTTAACATTTCCGGCGTGTTTACCGATGACTTCCCGGCGAACCCCTCGAATCCGTA 1139 Query 1140 TGACTATACCGCACCAGTAAAGCTCGGCGTTAATGCTGCGACGATGAAAGGGACAAAGCT 1199 ||||||||| ||||| |||||| |||||||||||||||| |||||||||||||||||||| Sbjct 1140 TGACTATACGGCACCGGTAAAGATCGGCGTTAATGCTGCAACGATGAAAGGGACAAAGCT 1199 Query 1200 TTACAGGCTTCCATACAACGCGACGGTGCAAATTGTTCTGCAGAATACAGCAATGATCTT 1259 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1200 TTACAGGCTTCCATACAACGCGACGGTGCAAATTGTTCTGCAGAATACAGCGATGATCTT 1259 Query 1260 GTCCGATAACCATCCGTTTCATCTTCACGGGTTTAACTTCTTCGAAGTGGGTAGAGGTTT 1319 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 1260 GTCCGATAACCATCCGTTTCATCTTCACGGGTTTAACTTCTTCGAAGTCGGTAGAGGTAT 1319 Query 1320 GGGGAATTTTAACCCGGAAAAAGATCCGAAAGCGTTTAACTTGGTGGATCCGGTAGAGAG 1379 |||||| |||||||||||||||||||||||| ||| || || |||||||||||||| || Sbjct 1320 GGGGAACTTTAACCCGGAAAAAGATCCGAAAATGTTCAATTTAGTGGATCCGGTAGAAAG 1379 Query 1380 AAACACCGTTGGAGTTCCAGCCGGTGGTTGGACTGCCATAAGATTCATCGCCGACAATCC 1439 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1380 AAACACCGTTGGAGTTCCAGCCGGTGGTTGGACTGCCATTAGATTCATCGCCGACAATCC 1439 Query 1440 AGGGGTATGGTTCATGCATTGTCACTTGGAGTTACATACAACTTGGGGATTAAAGATGGC 1499 |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1440 AGGGGTGTGGTTCATGCATTGTCACTTGGAATTACATACAACTTGGGGATTAAAGATGGC 1499 Query 1500 ATTCGTCGTTGACAATGGTCACGGCCCTGACCAGTCATTGCTTCCTCCACCCGCTGATCT 1559 ||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||| Sbjct 1500 ATTCGTCGTCGACAATGGTCACGGCCCTGACCAGGCATTGCTTCCTCCACCCGCCGATCT 1559 Query 1560 TCCCAAATGTTAG 1572 ||||||||||||| Sbjct 1560 TCCCAAATGTTAG 1572 > Ahg920739 jgi|Araly1|920739|scaffold_102020.1 Length=1786 Score = 65.8 bits (35), Expect = 9e-10 Identities = 37/38 (97%), Gaps = 0/38 (0%) Strand=Plus/Plus Query 151 GGTTGGGCAGATGGACCGGCTTACATAACACAATGTCC 188 |||||||| ||||||||||||||||||||||||||||| Sbjct 300 GGTTGGGCTGATGGACCGGCTTACATAACACAATGTCC 337 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58887518770 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5