BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58910.1
Length=1572
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496014 jgi|Araly1|496014|fgenesh2_kg.8__1830__AT5G58910.1 2510 0.0
Ahg920739 jgi|Araly1|920739|scaffold_102020.1 65.8 9e-10
> Ahg496014 jgi|Araly1|496014|fgenesh2_kg.8__1830__AT5G58910.1
Length=1572
Score = 2510 bits (1359), Expect = 0.0
Identities = 1502/1573 (95%), Gaps = 2/1573 (0%)
Strand=Plus/Plus
Query 1 ATGACGAACACCACGAAGCTGTGCTCGTCGAAGCCTATAGTCACCGTCAATGGACAA-TT 59
||||||||||||||||||||||||||||||||||| || ||||||||||||||| || ||
Sbjct 1 ATGACGAACACCACGAAGCTGTGCTCGTCGAAGCCCATCGTCACCGTCAATGGA-AAGTT 59
Query 60 TCCGGGACCCACCATTGTTGCAAGAGAAGGCGACACTATTTTGATCAAAGTTGTGAATCA 119
|||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 60 TCCGGGCCCCACCATTGTTGCAAGAGAAGACGACACTCTTTTGATCAAAGTTGTGAATCA 119
Query 120 CGTGAAGTACAACGTCTCCATCCACTGGACAGGTTGGGCAGATGGACCGGCTTACATAAC 179
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CGTGAACTACAACGTCTCCATCCACTGGACAGGTTGGGCAGATGGACCGGCTTACATAAC 179
Query 180 ACAATGTCCTATCCAACCGGGACAGAATTATCTCCACAATTTTACATTGACGGGTCAACG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ACAATGTCCTATCCAACCGGGACAGAATTATCTCCACAATTTTACATTGACGGGTCAACG 239
Query 240 AGGAACCCTATGGTGGCATGCTCACATCTTGTGGCTTCGTGCTACGGTGCACGGCGCCAT 299
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 240 AGGAACCCTATGGTGGCATGCTCACATCTTGTGGCTTCGTGCCACGGTGCACGGCGCCAT 299
Query 300 TGTCATCTTGCCTAAGCTCGGTGTCCCATACCCTTTCCCTAAGCCCTACAAAGAGAAAAC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TGTCATCTTGCCTAAGCTCGGTGTCCCATACCCTTTCCCTAAGCCCTACAAAGAGAAAAC 359
Query 360 CATTGTCCTTAGTGAATGGTGGAAATCGGACGTGGAAGAACTCATAAACGAGGCTTCAAG 419
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 360 AATTGTTCTTAGTGAATGGTGGAAATCGGACGTGGAAGAACTTATAAACGAGGCTTCAAA 419
Query 420 AATAGGAACAGCTCCTAGTGCTTCGGATGCACATACCATCAATGGTCATTCAGGCTCCAT 479
||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 420 AATTGGAACAGCTCCTAGCGCTTCTGATGCACATACCATCAATGGTCATTCAGGCTCCAT 479
Query 480 CTCTAATTGTCCTTCCCAAAGTAGTTACGGTTTACCAGTGAGAGCAGGAAAGACATACAT 539
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 480 CTCTAATTGTCCTTCCCAAAGTAGTTACGGTTTACCGGTGAGAGCAGGAAAGACGTACAT 539
Query 540 GTTAAGGATCATCAACGCGGCGTTAAACGAAGAGCTCTTCTTTAAAATTGCTGGTCACGT 599
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 540 GTTACGGATCATCAACGCGGCATTAAACGAAGAGCTCTTCTTTAAAATTGCTGGTCACGT 599
Query 600 ATTAACCGTTGTGGAAGTTGATGCTGTTTACACCAAACCGTATAAAACTGACACAGTATT 659
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ACTAACCGTTGTAGAAGTTGATGCTGTTTACACCAAACCGTATAAAACTGACACAGTATT 659
Query 660 CATAGCCCCGGGACAGACTACTAACGTTCTCTTAACAGCAAACGCAAACGCTGGTTCAAA 719
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 660 CATCGCCCCGGGACAGACTACTAACGTTCTCTTAACAGCAAACGCAAACGCTGGTTCCAA 719
Query 720 TTACATGGTCGCCGCCACAACATTTACGGACGCTCACATCCCATACGACAACGTCACAGC 779
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 720 TTACATGGTCGCCGCCACAACATTTACGGACGCTCAAATCCCATACGACAACGTCACAGC 779
Query 780 CACTGCCACCCTCCACTATATCGGTCACACTTCCACCGTTTCCACCTCCaaaaaaaCCGT 839
||| ||||| |||||||| ||||| |||||| |||||||||| |||||||||| |||||
Sbjct 780 CACCGCCACTCTCCACTACATCGGCCACACTGCCACCGTTTCTGCCTCCAAAAAGACCGT 839
Query 840 TCTCGCATCACTTCCACCTCAAAACGCAACATGGGTTGCAACCAAATTCACTAGATCACT 899
||||||||||||||| || ||||||||||| |||||||| ||||||||||||||||||||
Sbjct 840 TCTCGCATCACTTCCGCCGCAAAACGCAACTTGGGTTGCGACCAAATTCACTAGATCACT 899
Query 900 CAGGAGCTTAAACTCCCTCGAGTATCCAGCTAGGGTTCCAACAACCGTGGAACATTCCTT 959
| ||||||| ||||||| ||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 900 CCGGAGCTTGAACTCCCGCGAGTATCCGGCTAGGGTTCCAACAACCGTGGACCATTCCTT 959
Query 960 GTTCTTCACGGTAGGTCTTGGTGCAAACCCTTGCCAGAGTTGCAACAACGGTGTTCGCTT 1019
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 960 GTTCTTCACGGTAGGTCTTGGTGCAAACCCTTGCCAGAGCTGCAACAACGGTGTTCGCTT 1019
Query 1020 AGTGGCCGGAATAAACAACGTAACGTTTACCATGCCTAAAACCGCTTTACTCCAGGCTCA 1079
||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||
Sbjct 1020 AGTGGCCGGAATAAACAACGTAACGTTTACCATGCCTGAGACCGCTTTGCTCCAGGCTCA 1079
Query 1080 TTTCTTTAACATTTCCGGCGTATTTACCGACGACTTCCCGGCGAAACCTTCCAATCCGTA 1139
||||||||||||||||||||| |||||||| |||||||||||||| || || ||||||||
Sbjct 1080 TTTCTTTAACATTTCCGGCGTGTTTACCGATGACTTCCCGGCGAACCCCTCGAATCCGTA 1139
Query 1140 TGACTATACCGCACCAGTAAAGCTCGGCGTTAATGCTGCGACGATGAAAGGGACAAAGCT 1199
||||||||| ||||| |||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 1140 TGACTATACGGCACCGGTAAAGATCGGCGTTAATGCTGCAACGATGAAAGGGACAAAGCT 1199
Query 1200 TTACAGGCTTCCATACAACGCGACGGTGCAAATTGTTCTGCAGAATACAGCAATGATCTT 1259
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1200 TTACAGGCTTCCATACAACGCGACGGTGCAAATTGTTCTGCAGAATACAGCGATGATCTT 1259
Query 1260 GTCCGATAACCATCCGTTTCATCTTCACGGGTTTAACTTCTTCGAAGTGGGTAGAGGTTT 1319
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1260 GTCCGATAACCATCCGTTTCATCTTCACGGGTTTAACTTCTTCGAAGTCGGTAGAGGTAT 1319
Query 1320 GGGGAATTTTAACCCGGAAAAAGATCCGAAAGCGTTTAACTTGGTGGATCCGGTAGAGAG 1379
|||||| |||||||||||||||||||||||| ||| || || |||||||||||||| ||
Sbjct 1320 GGGGAACTTTAACCCGGAAAAAGATCCGAAAATGTTCAATTTAGTGGATCCGGTAGAAAG 1379
Query 1380 AAACACCGTTGGAGTTCCAGCCGGTGGTTGGACTGCCATAAGATTCATCGCCGACAATCC 1439
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1380 AAACACCGTTGGAGTTCCAGCCGGTGGTTGGACTGCCATTAGATTCATCGCCGACAATCC 1439
Query 1440 AGGGGTATGGTTCATGCATTGTCACTTGGAGTTACATACAACTTGGGGATTAAAGATGGC 1499
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1440 AGGGGTGTGGTTCATGCATTGTCACTTGGAATTACATACAACTTGGGGATTAAAGATGGC 1499
Query 1500 ATTCGTCGTTGACAATGGTCACGGCCCTGACCAGTCATTGCTTCCTCCACCCGCTGATCT 1559
||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1500 ATTCGTCGTCGACAATGGTCACGGCCCTGACCAGGCATTGCTTCCTCCACCCGCCGATCT 1559
Query 1560 TCCCAAATGTTAG 1572
|||||||||||||
Sbjct 1560 TCCCAAATGTTAG 1572
> Ahg920739 jgi|Araly1|920739|scaffold_102020.1
Length=1786
Score = 65.8 bits (35), Expect = 9e-10
Identities = 37/38 (97%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 151 GGTTGGGCAGATGGACCGGCTTACATAACACAATGTCC 188
|||||||| |||||||||||||||||||||||||||||
Sbjct 300 GGTTGGGCTGATGGACCGGCTTACATAACACAATGTCC 337
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58887518770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5