BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58920.1
Length=830
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950617 jgi|Araly1|950617|scaffold_802504.1 760 0.0
Ahg951754 jgi|Araly1|951754|scaffold_13900002.1 163 2e-39
> Ahg950617 jgi|Araly1|950617|scaffold_802504.1
Length=529
Score = 760 bits (411), Expect = 0.0
Identities = 492/531 (93%), Gaps = 5/531 (1%)
Strand=Plus/Plus
Query 93 AGCTCCCCGGAGAAGAAGATGGTGCGGAAACAGTTTCAACAGGCTAAAACTGGAATAGAG 152
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 AGCTCTCCGGGGAAGAAGATGGTGCGGAAACAGTTTCAACAGGCTAAAACTGGAATAGAG 62
Query 153 GCATTGAAGTCAATGGATGCTAACAACTACTTGAAGAAGGTTGGATTAGGGCGTGACGAT 212
|| ||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||
Sbjct 63 GCTTTGAAGTCAATGGATGCTAACAAGTACCTGAAGAAGGTTGGGTTAGGGCGTGACGAT 122
Query 213 ATGTTCTTTTGGAAACAAGTGGGAAAAGCATTGCTATGCACTTACACAATCTTTGGTATG 272
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 123 ATGTTTTTTTGGAAACAAGTGGGAAAAGCATTGCTTTGCACTTACACAATCTTTGGTATC 182
Query 273 GCTTGGATTTACAATGAAACGTCTCCTTTAGGTTGGTGGACGCTGAAGCCAAGACCAAAG 332
|||||||| |||||||||||||||||||| |||||||||||| ||||||| |||||||||
Sbjct 183 GCTTGGATATACAATGAAACGTCTCCTTTGGGTTGGTGGACGTTGAAGCCGAGACCAAAG 242
Query 333 GAAGAGAGAGAATTGGCTCATTTGTATGAGCGGCGTGAGTTTCCTTATCCTGGTGATACA 392
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 GAGGAGAGAGAGTTGGCTCATTTGTATGAGCGGCGTGAGTTTCCTTATCCTGGTGATACA 302
Query 393 GAGGCTATGGAGGATTTTGTTGCAAAGGG-GGGAATGATTGGTACTGCAATTGGACCGAA 451
||||| ||||||||||||||||||||||| |||| |||| ||||| || || || || ||
Sbjct 303 GAGGCAATGGAGGATTTTGTTGCAAAGGGAGGGA-TGATCGGTACAGCGATCGGGCCTAA 361
Query 452 AGGAATTGTTGAGTCCGAAGGTGAGGCTGATAATTACCAGAAGGAAATGGAGAAGAAGAA 511
||| |||||||||||||||||||| || |||||||| || ||||||||||||||||||||
Sbjct 362 AGGGATTGTTGAGTCCGAAGGTGAAGCCGATAATTATCAAAAGGAAATGGAGAAGAAGAA 421
Query 512 GTTTGATAAAGAGGCTCAGAAACTGTGGTTGAGAATGAGGAATGAGGTTATTACTGAACT 571
|||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||
Sbjct 422 GTTTGATAAAGAGGCTCAGAAACTGTGGCTGAGAATGAGGAATGAGGTCATGACTGAACT 481
Query 572 TCAAGAGAAAGGGCATAATCTTGAATAAGGAAGTGCAATAGGGTTTTGATA 622
||||||||||||| || ||||||||| | |||||||| || |||||||||
Sbjct 482 TCAAGAGAAAGGGTATGATCTTGAAT--G-AAGTGCAAGAGAGTTTTGATA 529
> Ahg951754 jgi|Araly1|951754|scaffold_13900002.1
Length=317
Score = 163 bits (88), Expect = 2e-39
Identities = 125/142 (88%), Gaps = 6/142 (4%)
Strand=Plus/Plus
Query 241 CATTGCTATGCA-CTTACACAATCTTTGGTATGGC-TTGGATTTACAATGAAACGTCTCC 298
|||||||||||| ||| |||||||||||| || || | ||||||||| ||||||||||||
Sbjct 178 CATTGCTATGCACCTT-CACAATCTTTGGCATCGCATAGGATTTACATTGAAACGTCTCC 236
Query 299 TTTAGGTTGGTGGACGCTGAAGCCAAGACCAAAGGAAGAGAGAGAATTGGCTCATTTGTA 358
|||||||||||||||| ||||| ||||||||| ||| |||||||||| ||| ||||||||
Sbjct 237 TTTAGGTTGGTGGACGTTGAAGTCAAGACCAAGGGAGGAGAGAGAATGGGCCCATTTGTA 296
Query 359 -TGAGCGGC-GTGAGTTTCCTT 378
||| |||| | ||||||||||
Sbjct 297 ATGACCGGCAG-GAGTTTCCTT 317
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30688948185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5