BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G58920.1 Length=830 Score E Sequences producing significant alignments: (Bits) Value Ahg950617 jgi|Araly1|950617|scaffold_802504.1 760 0.0 Ahg951754 jgi|Araly1|951754|scaffold_13900002.1 163 2e-39 > Ahg950617 jgi|Araly1|950617|scaffold_802504.1 Length=529 Score = 760 bits (411), Expect = 0.0 Identities = 492/531 (93%), Gaps = 5/531 (1%) Strand=Plus/Plus Query 93 AGCTCCCCGGAGAAGAAGATGGTGCGGAAACAGTTTCAACAGGCTAAAACTGGAATAGAG 152 ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3 AGCTCTCCGGGGAAGAAGATGGTGCGGAAACAGTTTCAACAGGCTAAAACTGGAATAGAG 62 Query 153 GCATTGAAGTCAATGGATGCTAACAACTACTTGAAGAAGGTTGGATTAGGGCGTGACGAT 212 || ||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||| Sbjct 63 GCTTTGAAGTCAATGGATGCTAACAAGTACCTGAAGAAGGTTGGGTTAGGGCGTGACGAT 122 Query 213 ATGTTCTTTTGGAAACAAGTGGGAAAAGCATTGCTATGCACTTACACAATCTTTGGTATG 272 ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 123 ATGTTTTTTTGGAAACAAGTGGGAAAAGCATTGCTTTGCACTTACACAATCTTTGGTATC 182 Query 273 GCTTGGATTTACAATGAAACGTCTCCTTTAGGTTGGTGGACGCTGAAGCCAAGACCAAAG 332 |||||||| |||||||||||||||||||| |||||||||||| ||||||| ||||||||| Sbjct 183 GCTTGGATATACAATGAAACGTCTCCTTTGGGTTGGTGGACGTTGAAGCCGAGACCAAAG 242 Query 333 GAAGAGAGAGAATTGGCTCATTTGTATGAGCGGCGTGAGTTTCCTTATCCTGGTGATACA 392 || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 243 GAGGAGAGAGAGTTGGCTCATTTGTATGAGCGGCGTGAGTTTCCTTATCCTGGTGATACA 302 Query 393 GAGGCTATGGAGGATTTTGTTGCAAAGGG-GGGAATGATTGGTACTGCAATTGGACCGAA 451 ||||| ||||||||||||||||||||||| |||| |||| ||||| || || || || || Sbjct 303 GAGGCAATGGAGGATTTTGTTGCAAAGGGAGGGA-TGATCGGTACAGCGATCGGGCCTAA 361 Query 452 AGGAATTGTTGAGTCCGAAGGTGAGGCTGATAATTACCAGAAGGAAATGGAGAAGAAGAA 511 ||| |||||||||||||||||||| || |||||||| || |||||||||||||||||||| Sbjct 362 AGGGATTGTTGAGTCCGAAGGTGAAGCCGATAATTATCAAAAGGAAATGGAGAAGAAGAA 421 Query 512 GTTTGATAAAGAGGCTCAGAAACTGTGGTTGAGAATGAGGAATGAGGTTATTACTGAACT 571 |||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||| Sbjct 422 GTTTGATAAAGAGGCTCAGAAACTGTGGCTGAGAATGAGGAATGAGGTCATGACTGAACT 481 Query 572 TCAAGAGAAAGGGCATAATCTTGAATAAGGAAGTGCAATAGGGTTTTGATA 622 ||||||||||||| || ||||||||| | |||||||| || ||||||||| Sbjct 482 TCAAGAGAAAGGGTATGATCTTGAAT--G-AAGTGCAAGAGAGTTTTGATA 529 > Ahg951754 jgi|Araly1|951754|scaffold_13900002.1 Length=317 Score = 163 bits (88), Expect = 2e-39 Identities = 125/142 (88%), Gaps = 6/142 (4%) Strand=Plus/Plus Query 241 CATTGCTATGCA-CTTACACAATCTTTGGTATGGC-TTGGATTTACAATGAAACGTCTCC 298 |||||||||||| ||| |||||||||||| || || | ||||||||| |||||||||||| Sbjct 178 CATTGCTATGCACCTT-CACAATCTTTGGCATCGCATAGGATTTACATTGAAACGTCTCC 236 Query 299 TTTAGGTTGGTGGACGCTGAAGCCAAGACCAAAGGAAGAGAGAGAATTGGCTCATTTGTA 358 |||||||||||||||| ||||| ||||||||| ||| |||||||||| ||| |||||||| Sbjct 237 TTTAGGTTGGTGGACGTTGAAGTCAAGACCAAGGGAGGAGAGAGAATGGGCCCATTTGTA 296 Query 359 -TGAGCGGC-GTGAGTTTCCTT 378 ||| |||| | |||||||||| Sbjct 297 ATGACCGGCAG-GAGTTTCCTT 317 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30688948185 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5