BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58930.1
Length=2147
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496016 jgi|Araly1|496016|fgenesh2_kg.8__1832__AT5G58930.1 2483 0.0
Ahg497283 jgi|Araly1|497283|fgenesh2_kg.139__1__AT5G58930.1 2429 0.0
Ahg485078 jgi|Araly1|485078|fgenesh2_kg.5__1070__AT3G46990.1 621 6e-177
> Ahg496016 jgi|Araly1|496016|fgenesh2_kg.8__1832__AT5G58930.1
Length=2058
Score = 2483 bits (1344), Expect = 0.0
Identities = 1908/2155 (89%), Gaps = 140/2155 (6%)
Strand=Plus/Plus
Query 28 TCTCTGCCACTCTCATGTGACACAATTATACCATTTTTTCTTTGATATTTTGTACAAAAA 87
||||||||||||||||||||||||||| |||||||||| |||||||| ||||||| ||||
Sbjct 1 TCTCTGCCACTCTCATGTGACACAATTGTACCATTTTTACTTTGATA-TTTGTAC-AAAA 58
Query 88 ACATAACATTATTTTCTCTCTATTTTCATTAACTCATTTCTGTATTTTTCATTAACTATA 147
|||||||||||||||||||||||||||||||||||||||||||| || |||| ||
Sbjct 59 ACATAACATTATTTTCTCTCTATTTTCATTAACTCATTTCTGTA---TT--TTAAGTA-C 112
Query 148 AGAAAGTACAGAAATAAATATAATACGCATT-AAAATGAAGAAATAA-TA-AAACG-AGA 203
||||| || | | |||||||| | |||| |||| || ||| || || ||| | |||
Sbjct 113 AGAAA-TA-A-ATATAAATAT--GA--CATTCAAAA--AA-AAA-AAGTATAAA-GAAGA 160
Query 204 GAAAAGGTTTAAGGAAAGGGAAAGGGTTAGTGTAGTGTTGACAACGCCActcttgactct 263
|||||||||||||||||||||||||||| || || ||||||||| | | |
Sbjct 161 -AAAAGGTTTAAGGAAAGGGAAAGGGTTA--GT-GT-TTGACAACG---C-C---A---- 204
Query 264 ctttctcttcttcttctcGAGATCCTGAAAATGTGACTGACAGATTCTTCAACTTCACTC 323
| |||||||||||||||||| ||||||| ||||||||||||||||||||| ||
Sbjct 205 ------C-TCTTCTTCTCGAGATCCTAAAAATGTCACTGACAGATTCTTCAACTTC-TTC 256
Query 324 TCT-TCTTCTTCCATTCACTGAACTCAAACCACCCCCTGTGAGCTATGACCCACCAAACC 382
|| ||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||
Sbjct 257 ACTCTCTTCTTCCATTCACTGAACT-AAACCA--CCCTGAGAGCTATGACCCACCAAACC 313
Query 383 CATCAGCGTCGTCGCCGTCGTCACTCCGCCGTCTGTCACCGTCATCCTTCTTCCAAACCC 442
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 314 CACCAGCGTCGTCGCCGTCGTCACTCCGCCGTCTGTCACCGTCATCCTACTTCCAAACCC 373
Query 443 ACCACTGGTTTCTGTGCCACCTGTCTCCGTGAACGTCTCTCTACCATCGAAGCTCTATCT 502
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 374 ACCACCGGTTTCTGTGCCACCTGTCTCCGTGAACGTCTCTCCACCATCGAAGCTCTCTCT 433
Query 503 TCCTCTGTCTCAGCTTCCACTGAGCTCCGCCGTGTTCGCTCCTACTCTGTTCGTGACGCA 562
|||||||| ||||||||| ||||||||||||||||||| |||||||| ||||||||||||
Sbjct 434 TCCTCTGTTTCAGCTTCCTCTGAGCTCCGCCGTGTTCGTTCCTACTCCGTTCGTGACGCA 493
Query 563 TCCGCTTCTGTTTTGGACCAGCCACGACGCAGATCGTGTGATGTTAGGTCTAATCACGAC 622
|||||||||| ||||||||||||||||||||||||||||||||| ||||| | | ||
Sbjct 494 TCCGCTTCTGCTTTGGACCAGCCACGACGCAGATCGTGTGATGTCAGGTC---T-A--AC 547
Query 623 GACGATGATGATGATGAGCTGCTAAAGAGCTCGATTCGATTCCCCATTGTACCGGATTTG 682
|||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 548 GACG--G-TGATGATGAGCTGCTACAGAGCTCGATTCGATTCCCCATTGTACCGGATTTG 604
Query 683 ATaga-g--gat------gaagaaga---agaag--a-t-ga-----tga-g--ggtaag 718
| ||| | ||| |||||||| ||||| | | || ||| | ||||||
Sbjct 605 AAAGAGGATGATGAAGAAGAAGAAGACGGAGAAGAAATTAGAGGTTTTGATGATGGTAAG 664
Query 719 aag-ctcgttgaagaagaaatcgaagatggagagcagaagaCGATGAAGGAGTTAATAGA 777
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 -AGACTCGTTGAAGAAGAAATCGAAGATGGAGAGCAGAAGACGATGAAGGAGTTAATAGA 723
Query 778 TCTGGAATCGAGAAATCAAC-AA-C-TGAAGAACAACGGCAAAGATTCGGTTTTTAGCAG 834
|||||||||||||||||||| || | ||||| ||| ||||||||||| |||||||||||
Sbjct 724 TCTGGAATCGAGAAATCAACAAATCAAGAAGAGCAATGGCAAAGATTCAGTTTTTAGCAG 783
Query 835 AACACTCAGGAAGTTTTCACTCAAACATCATC----GAA----AAA-TTCCAGATTCCGG 885
|||||| | ||| ||||||||||||||||||| ||| ||| |||||||||||||
Sbjct 784 AACACTTAAGAAATTTTCACTCAAACATCATCTGAAGAATGGGAAAGTTCCAGATTCCGG 843
Query 886 GAACAGTCTTGGTCGTCGTTCATGTGATGTAGATCCTAGGTTGTCTCTTGACGCAGGTCG 945
||||||||| || ||||| ||||||||||| ||||||||||||||||| |||||| ||||
Sbjct 844 GAACAGTCTCGGCCGTCGCTCATGTGATGTGGATCCTAGGTTGTCTCTCGACGCAAGTCG 903
Query 946 AGTCTCTTTCGACGAGCCTAGAGCTTCATGGGATGGATGTTTGATTGGAAAGACATATCC 1005
| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 AATCTCGTTCGAGGAGCCTAGAGCTTCATGGGATGGATGTTTGATTGGAAAGACATATCC 963
Query 1006 AAAGCTGATACCTTTGTCCTCTGTGACTGAAGACGTTAAAGCCTCGCCGGAGAAGATAAC 1065
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 964 AAAGCTGATTCCTTTGTCCTCTGTGACTGAAGATGTTAAAGCCTCGCCGGAGAAGATAAC 1023
Query 1066 CGGTGAGAAGGTAGAGGAAGATGAGAAGAACAATCCAGGTGGGACAGCTCAAACGAGGGA 1125
||||||||| | ||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1024 CGGTGAGAAAGAAGACGAAGAGGAGAAGAACAACCCAGGTGGGACAGCTCAAACGAGGGA 1083
Query 1126 TTACTACTTGGATTCACGAAGGAGAAGAAGCTTTGATCGATCATCGAGACATGGTTTGCT 1185
|||||||||||||||||| |||| |||||||| |||||||||||||||||||| |||||
Sbjct 1084 TTACTACTTGGATTCACGGCGGAGGAGAAGCTTCGATCGATCATCGAGACATGGATTGCT 1143
Query 1186 TGAAGTTGATGAATTGAAAGCTATTTCTAATGCTAAGGTATCACCTGAAACTGTTGGTTT 1245
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1144 TGAAGTTGATGAATTGAAAGCTATTTCGAATGCTAAGGTATCACCTGAAACTGTTGGTTT 1203
Query 1246 GTTTCATGGAGCGAAGTTGCTTGTTACTGAGAGGGAACTTAGGGATTCGAATTGGTATTC 1305
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1204 GTTTCATGGAGCGAAGTTGCTTGTTACGGAGAGGGAACTTAGGGATTCGAATTGGTATTC 1263
Query 1306 TATTAAGAATTACAAACCGGAGAGCTTGGAGTTAGGTTCTAAAGGTGTTGGTTGTGTTGC 1365
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1264 AATTAAAAATTACAAACCGGAGAGCTTGGAGTTAGGTTCTAAAGTTGTTGGTTGTGTTGC 1323
Query 1366 TGCTGGTGAGGTGAAGAAGCAGGATGGTTTTGGGTTGAAGAAGAGCGGAAAGAACTGGTC 1425
||||||||||||||||||||| ||||||||||||||||||||||| || ||||| |||
Sbjct 1324 TGCTGGTGAGGTGAAGAAGCAAGATGGTTTTGGGTTGAAGAAGAGTGGGAAGAAATGGGG 1383
Query 1426 TAAAGGATGGAACTTTTGGGGATTGATTCAGAGGAAAACTGATGTGGCGAAGAACGAAAT 1485
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 1384 TAAAGGATGGAACTTTTGGGGATTGATTCAGAGGAAAACCGATGTGGCCAAGAACGACAT 1443
Query 1486 GAAAACCGAGCAAAGTTTGAAACTTGGAGGAAATACTATGGAGGGTTCTCTTGCTGAGTC 1545
||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||
Sbjct 1444 CAAAACCGAGCAAAGTTTGAAACTTGGAGGAAATGCAATGGAGGGTTCTCTAGCTGAGTC 1503
Query 1546 TTTGTTGAAGCTTAGGAGAGTGGCTAAAGGAGAAACCAATGGTGATGTCAGTGAGAAACT 1605
| |||||||||||||||| ||||||||||| ||||||||||||||||| || || |||||
Sbjct 1504 TCTGTTGAAGCTTAGGAGGGTGGCTAAAGGGGAAACCAATGGTGATGTTAGCGATAAACT 1563
Query 1606 CATAAGAAGTTACAGCGTTAGTGCGAGAAAGTCTTGTGATGGTATGTTACGTGGTGCTTC 1665
| ||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1564 CTTAAGAAGCTACAGCGTTAGTGCGAGAAAGTCCTGCGATGGTATGTTACGTGGTGCTTC 1623
Query 1666 TATTGTTAATGGCTTTGAAGGTGGAAGAAGCTCTTGTGATGGTCTATTTCATGGCTCTAT 1725
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1624 TATTGTTAATGGATTTGAAGGTGGAAGAAGCTCTTGTGATGGTCTGTTTCATGGCTCTAT 1683
Query 1726 AACTGGTGTTGAGACTGGAAGAAGAAGCTTGTGTGAAGACGGAATGTTTCATGGCGTTGA 1785
|||||| ||||||| ||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 1684 TACTGGTATTGAGACCGGAAGAAGAAGCTCGTGTGAAGACGGATTGTTTCATGGCGTTGA 1743
Query 1786 AGGCAAACGGAATCATCTTCTCCAGAGTGATGACAAGCTTGGTACTTACTCGCCTGACAA 1845
||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct 1744 AGGCAAACGGAATCATCTTCTTCAGAGTGATGACAAGCTTGGGACTTACTCGCCGGACAA 1803
Query 1846 CCTCAGAAATGGTATGGTTAGATTCTACTTGACGCCATTAAACAGCCATATGACAAGCAA 1905
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 1804 CCTCAGAAATGGTATGGTTAGATTCTACTTGACGCCATTAAAAAGCCATACGACAAGCAA 1863
Query 1906 GTCCGGTAAAAGTAGGCTGATGAATTAGTCTGATCTCTGATTGTTCAGTTCATGATGGAC 1965
|||||||||| ||||||||||||||| || | | || || || | | || | |
Sbjct 1864 CTCCGGTAAAACTAGGCTGATGAATTAATCAG-T-TC--ATGGTGGA---C-TG--G-A- 1911
Query 1966 TATATTCAAACTGTGTTGTAATTAGCAATTACCCTTGTGTGTTACTTATTTCTCCCACTG 2025
|| | ||||||||||||||||| || | || ||| | ||||||| ||||| ||
Sbjct 1912 -AT-TG-AAACTGTGTTGTAATTACCA-TG----TT-TGT-T-ACTTATTA-TCCCATTG 1959
Query 2026 TTCTATAGATATATGAACTAAAATCATATGACCATGTTGTTCTCTCTTCTTTTTCCTTTT 2085
||||||||||||||||||||||||||||| |||| || | | ||||||| ||
Sbjct 1960 TTCTATAGATATATGAACTAAAATCATATC-CCAT------CT-T-T-CTTTTTC-TT-- 2006
Query 2086 CTACTTTTTATGTGTATTAATGCTCTTAAAGAGTTCAATACAATAGTGATTTTGT 2140
|| |||| ||||||||||| |||||||| |||||||||||||| ||||||||||
Sbjct 2007 CT--TTTT-ATGTGTATTAACGCTCTTAA-GAGTTCAATACAATGGTGATTTTGT 2057
> Ahg497283 jgi|Araly1|497283|fgenesh2_kg.139__1__AT5G58930.1
Length=2070
Score = 2429 bits (1315), Expect = 0.0
Identities = 1917/2180 (88%), Gaps = 152/2180 (7%)
Strand=Plus/Plus
Query 4 TTGTACAC-TTCTTCCTTTTGATTCTCTCTGCCACTCTCATGTGACACAATTATACCATT 62
|||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 TTGTACACTTTCTTCC-TTTGATTCTCTCTGCCACTCTCATGTGACACAATTATACAATT 59
Query 63 TTTTCTTTGATATTTTGTACAAAAAACATAACATTATTTTCTCTCTATTTTCATTAACTC 122
|||||||||||| | | ||||||||| |||||||||||||||||
Sbjct 60 TTTTCTTTGATA-----T----------T----TTATTTTCTATCTATTTTCATTAACTC 100
Query 123 ATTTCTGTATTTTTCATTAACTATAAGAAAGTACAGAAATAAATATAATACGCATTAAAA 182
||||||||||||| | | | ||||||||||||||||| | |
Sbjct 101 ATTTCTGTATTTT--A--A-------G----TACAGAAATAAATATAA-A---A------ 135
Query 183 TGAAGAAATAATAAAACGAGAGAAAA-GGTTTAAGGAAAGGGAAAGGGTTAGTGTAGTGT 241
||| | |||||||| | ||||||| |||||||||||||||||||| || | |||||
Sbjct 136 -GAA-A--TAATAAAATGTGAGAAAAAGGTTTAAGGAAAGGGAAAGGAA-AGGGGAGTGT 190
Query 242 T-GACAACGCCActcttgactctctttctcttcttcttctcGAGATCCTGAAAATGTGAC 300
| |||||||||||||| || ||| || | ||||||||||||||||| ||||||| ||
Sbjct 191 TTGACAACGCCACTCT---CT-TCT--CT-T-CTTCTTCTCGAGATCCTAAAAATGTCAC 242
Query 301 TGACAGATTCTTCAACTTCA-CTCTCTTCTTCTTCCATTCACTGAACTCAAACCACC-CC 358
||||||||||||||||||| | |||| |||||||||||||||||||| || ||| | ||
Sbjct 243 TGACAGATTCTTCAACTTCTTCACTCT-CTTCTTCCATTCACTGAACTGAATCCATCACC 301
Query 359 CTGTGAGCTATGACCCACCAAACCCATCAGCGTCGTCGCCGTCGTCACTCCGCCGTCTGT 418
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 CTGAGAGCTATGACCCACCAAACCCATCAGCGTCGTCGCCGTCGTCACTCCGCCGTCTGT 361
Query 419 CACCGTCATCCTTCTTCCAAACCCACCACTGGTTTCTGTGCCACCTGTCTCCGTGAACGT 478
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 362 CACCGTCATCCTACTTCCAAACCCACCACCGGTTTCTGTGCCACCTGTCTCCGTGAACGT 421
Query 479 CTCTCTACCATCGAAGCTCTATCTTCCTCTGTCTCAGCTTCCACTGAGCTCCGCCGTGTT 538
||||| |||||||||||||| ||||||||||| ||||||||| |||||||||||||||||
Sbjct 422 CTCTCCACCATCGAAGCTCTCTCTTCCTCTGTTTCAGCTTCCTCTGAGCTCCGCCGTGTT 481
Query 539 CGCTCCTACTCTGTTCGTGACGCATCCGCTTCTGTTTTGGACCAGCCACGACGCAGATCG 598
|| |||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 482 CGTTCCTACTCCGTTCGTGACGCATCCGCTTCTGCTTTGGACCAGCCACGACGCAGGTCG 541
Query 599 TGTGATGTTAGGTCTAATCACGACGACGATGATGATGATGAGCTGCTAAAGAGCTCGATT 658
|||||||| |||||||| | |||| | ||||||||| | |||||| |||||||||||
Sbjct 542 TGTGATGTCAGGTCTAA-C--GACG--G-TGATGATGA-G--CTGCTACAGAGCTCGATT 592
Query 659 CGATTCCCCATTGTACCGGATTTGATagaggatga--a-gaagaagaaga---------- 705
||||||||||||||||||||||||| ||||||||| | |||||||||||
Sbjct 593 CGATTCCCCATTGTACCGGATTTGAAAGAGGATGATGAAGAAGAAGAAGACGGAGAAGAA 652
Query 706 -t--ga--t---ga-g--ggtaaga-agctcgttgaagaagaaatcgaagatggagagca 753
| || | || | ||||||| | ||||||||||||||||||||||||||||||||
Sbjct 653 ATTAGAGGTTTTGATGATGGTAAGAGA-CTCGTTGAAGAAGAAATCGAAGATGGAGAGCA 711
Query 754 gaagaCGATGAAGGAGTTAATAGATCTGGAATCGAGAAATCAACAACTGAAGAA---CAA 810
|||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||
Sbjct 712 GAAGACGATGAAGGAGTTAATAGATCTGGAATCGAGAAATCAACAAATCAAGAAGAGCAA 771
Query 811 CGGCAAAGATTCGGTTTTTAGCAGAACACTCAGGAAGTTTTCACTCAAACATCATC-GAA 869
||||||||||||||||||||||| ||||| | ||| ||||||||||||||||||| |||
Sbjct 772 TGGCAAAGATTCGGTTTTTAGCAGGACACTTAAGAAATTTTCACTCAAACATCATCTGAA 831
Query 870 -AA----A---TTCCAGATTCCGGGAACAGTCTTGGTCGTCGTTCATGTGATGTAGATCC 921
|| | |||||||||||||||||||||| || ||||| ||||||||||| |||||
Sbjct 832 GAATGGGAAAGTTCCAGATTCCGGGAACAGTCTCGGCCGTCGCTCATGTGATGTGGATCC 891
Query 922 TAGGTTGTCTCTTGACGCAGGTCGAGTCTCTTTCGACGAGCCTAGAGCTTCATGGGATGG 981
|||||||||||| |||||| ||||| |||| ||||| |||||||||||||||||||||||
Sbjct 892 TAGGTTGTCTCTCGACGCAAGTCGAATCTCGTTCGAGGAGCCTAGAGCTTCATGGGATGG 951
Query 982 ATGTTTGATTGGAAAGACATATCCAAAGCTGATACCTTTGTCCTCTGTGACTGAAGACGT 1041
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 952 ATGTTTGATTGGAAAGACATATCCAAAGCTGATTCCTTTGTCCTCTGTGACTGAAGATGT 1011
Query 1042 TAAAGCCTCGCCGGAGAAGATAACCGGTGAGAAGGTAGAGGAAGATGAGAAGAACAATCC 1101
||||||||||||||||||||||||||||||||| | ||| ||||| ||||||||||| ||
Sbjct 1012 TAAAGCCTCGCCGGAGAAGATAACCGGTGAGAAAGAAGACGAAGAGGAGAAGAACAACCC 1071
Query 1102 AGGTGGGACAGCTCAAACGAGGGATTACTACTTGGATTCACGAAGGAGAAGAAGCTTTGA 1161
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||
Sbjct 1072 AGGTGGGACAGCTCAAACGAGGGATTACTACTTGGATTCACGGCGGAGGAGAAGCTTCGA 1131
Query 1162 TCGATCATCGAGACATGGTTTGCTTGAAGTTGATGAATTGAAAGCTATTTCTAATGCTAA 1221
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1132 TCGATCATCGAGACATGGATTGCTTGAAGTTGATGAATTGAAAGCTATTTCGAATGCTAA 1191
Query 1222 GGTATCACCTGAAACTGTTGGTTTGTTTCATGGAGCGAAGTTGCTTGTTACTGAGAGGGA 1281
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1192 GGTATCACCTGAAACTGTTGGTTTGTTTCATGGAGCGAAGTTGCTTGTTACGGAGAGGGA 1251
Query 1282 ACTTAGGGATTCGAATTGGTATTCTATTAAGAATTACAAACCGGAGAGCTTGGAGTTAGG 1341
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1252 ACTTAGGGATTCGAATTGGTATTCAATTAAAAATTACAAACCGGAGAGCTTGGAGTTAGG 1311
Query 1342 TTCTAAAGGTGTTGGTTGTGTTGCTGCTGGTGAGGTGAAGAAGCAGGATGGTTTTGGGTT 1401
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1312 TTCTAAAGTTGTTGGTTGTGTTGCTGCTGGTGAGGTGAAGAAGCAAGATGGTTTTGGGTT 1371
Query 1402 GAAGAAGAGCGGAAAGAACTGGTCTAAAGGATGGAACTTTTGGGGATTGATTCAGAGGAA 1461
||||||||| || ||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1372 GAAGAAGAGTGGGAAGAAATGGGGTAAAGGATGGAACTTTTGGGGATTGATTCAGAGGAA 1431
Query 1462 AACTGATGTGGCGAAGAACGAAATGAAAACCGAGCAAAGTTTGAAACTTGGAGGAAATAC 1521
||| |||||||| |||||||| || ||||||||||||||||||||||||||||||||| |
Sbjct 1432 AACCGATGTGGCCAAGAACGACATCAAAACCGAGCAAAGTTTGAAACTTGGAGGAAATGC 1491
Query 1522 TATGGAGGGTTCTCTTGCTGAGTCTTTGTTGAAGCTTAGGAGAGTGGCTAAAGGAGAAAC 1581
|||||||||||||| ||||||||| |||||||||||||||| ||||||||||| |||||
Sbjct 1492 AATGGAGGGTTCTCTAGCTGAGTCTCTGTTGAAGCTTAGGAGGGTGGCTAAAGGGGAAAC 1551
Query 1582 CAATGGTGATGTCAGTGAGAAACTCATAAGAAGTTACAGCGTTAGTGCGAGAAAGTCTTG 1641
|||||||||||| || ||||||||| ||||||| ||||||||||||||||||||||| ||
Sbjct 1552 CAATGGTGATGTTAGCGAGAAACTCTTAAGAAGCTACAGCGTTAGTGCGAGAAAGTCCTG 1611
Query 1642 TGATGGTATGTTACGTGGTGCTTCTATTGTTAATGGCTTTGAAGGTGGAAGAAGCTCTTG 1701
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1612 CGATGGTATGTTACGTGGTGCTTCTATTGTTAATGGATTTGAAGGTGGAAGAAGCTCTTG 1671
Query 1702 TGATGGTCTATTTCATGGCTCTATAACTGGTGTTGAGACTGGAAGAAGAAGCTTGTGTGA 1761
||||||||| |||||||||||||| |||||||||||||| ||||||||||||| ||||||
Sbjct 1672 TGATGGTCTGTTTCATGGCTCTATTACTGGTGTTGAGACCGGAAGAAGAAGCTCGTGTGA 1731
Query 1762 AGACGGAATGTTTCATGGCGTTGAAGGCAAACGGAATCATCTTCTCCAGAGTGATGACAA 1821
||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1732 AGACGGATTGTTTCATGGCGTTGAAGGCAAACGGAATCATCTTCTTCAGAGAGATGACAA 1791
Query 1822 GCTTGGTACTTACTCGCCTGACAACCTCAGAAATGGTATGGTTAGATTCTACTTGACGCC 1881
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1792 GCTTGGGACTTACTCGCCGGACAACCTCAGAAATGGTATGGTTAGATTCTACTTGACGCC 1851
Query 1882 ATTAAACAGCCATATGACAAGCAAGTCCGGTAAAAGTAGGCTGATGAATTAGTCTGATCT 1941
|||||| ||||||| ||||||||| |||||||||| ||||||||||||||| || | | |
Sbjct 1852 ATTAAAAAGCCATACGACAAGCAACTCCGGTAAAACTAGGCTGATGAATTAATCAG-T-T 1909
Query 1942 CTGATTGTTCAGTTCATGATGGACTATATTCAAACTGTGTTGTAATTAGCAATTACCCTT 2001
| || || | | || | | || | ||||||||||||||||| || | ||
Sbjct 1910 C--ATGGTGGA---C-TG--G-A--AT-TG-AAACTGTGTTGTAATTACCA-TG----TT 1951
Query 2002 GTGTGTTACTTATTTCTCCCACTGTTCTATAGATATATGAACTAAAATCATATGACCATG 2061
||| | ||||||| ||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1952 -TGT-T-ACTTATTA-TCCCATTGTTCTATAGATATATGAACTAAAATCATATC-CCAT- 2005
Query 2062 TTGTTCTCTCTTCTTTTTCCTTTTCTACTTTTTATGTGTATTAATGCTCTTAAAGAGTTC 2121
|| | | ||||||| || || |||| ||||||||||| |||||||| ||||||
Sbjct 2006 -----CT-T-T-CTTTTTC-TT--CT--TTTT-ATGTGTATTAACGCTCTTAA-GAGTTC 2050
Query 2122 AATACAATAGTGATTTTGTT 2141
|||||||| |||||||||||
Sbjct 2051 AATACAATGGTGATTTTGTT 2070
> Ahg485078 jgi|Araly1|485078|fgenesh2_kg.5__1070__AT3G46990.1
Length=1916
Score = 621 bits (336), Expect = 6e-177
Identities = 847/1082 (78%), Gaps = 82/1082 (8%)
Strand=Plus/Plus
Query 895 TGGTCGTCGTTCATGTGATGTAGATCCTAGGTTGTCTCTTGACGCAGGT-CGAGTCTC-T 952
||||||||| |||||||||||||||||||| ||||||||||| | |||| || |||| |
Sbjct 761 TGGTCGTCGCTCATGTGATGTAGATCCTAGATTGTCTCTTGATGGAGGTAGGA-TCTCGT 819
Query 953 TTCGACG-AGCCTAGAGCTTCATGGGATGGATGTTTGATTGGAAAGA-CATATCCA-AAG 1009
|| || | | ||||| ||||| |||||||| || |||||| |||| | ||||| || |||
Sbjct 820 TT-GA-GAAACCTAGGGCTTCGTGGGATGGTTGCTTGATT-GAAAAATCATAT-CATAAG 875
Query 1010 CTGATAC--CTTTGTCCT-CTGTGACTGAAGACGTTAAAGCCTCGCCGGAGAAGAT-AAC 1065
|| | || | |||| || ||||||| ||||| | ||||| || | | | | ||
Sbjct 876 CT-A-ACGACATTGT-CTACTGTGACGGAAGATGCTAAAG-CT-AAATGTGGTGTTGAA- 929
Query 1066 CGGTG-AGAAG--GTAGAGGAAGATGAGAAGAACAATCCAGGTGGGACAGCTCAAACGAG 1122
| | ||||| | ||| |||| ||| |||| | |||||||||||| | ||||||||
Sbjct 930 -GAAGAAGAAGAAGAAGAAGAAGGGGAGGAGAAGAGTCCAGGTGGGACGGTTCAAACGAA 988
Query 1123 GGATTACTACTTGGATTCACGAAGGAGAAGAAGCTTTGATCGA------TC-A-T-CGAG 1173
| | || |||| |||||| || ||||||| || ||||||||| || | | |||
Sbjct 989 GAACTATTACTCGGATTCTCGTCGGAGAAGGAGTTTTGATCGATCGGTTTCGATTAAGAG 1048
Query 1174 ACATGGTTTGCTTGAAGTTGATGAATTGAAAGCTATTTCTAATGCTAAGGTATCACCTGA 1233
||| || |||||||| ||||||||||||| || ||| || ||||||||||||||||||||
Sbjct 1049 ACAAGGATTGCTTGAGGTTGATGAATTGAGAGGTATATCGAATGCTAAGGTATCACCTGA 1108
Query 1234 AACTGTTGGTTTGTTTCATGGAGCGAAGTTGCTT-GTTACTGAGAGGGAACTTAGGGATT 1292
||||||||||||||||||||| || ||||| || ||||| |||| ||||||||||||||
Sbjct 1109 AACTGTTGGTTTGTTTCATGGTGCTAAGTTA-TTAGTTACAGAGAAGGAACTTAGGGATT 1167
Query 1293 CGAATTGGTATTC-TATTAAGAAT-TACAAACCGGAGAGCTTGGAGTTAGGTTCTAAAGG 1350
||||||||||||| | | || ||| | ||| | |||||| | |||| |||||||||
Sbjct 1168 CGAATTGGTATTCGTCTAAA-AATGTT-AAATCAGAGAGCAAAAAATTAGTTTCTAAAGG 1225
Query 1351 TGTTGGTT-GTGTTGCTGCTGGTGAGGTGAAGAAGCAGGATGGTTTTGG-GTTGAAGAAG 1408
| || || ||||||||||||||| ||||||||||||| || | || ||| |||||
Sbjct 1226 AAA-GATTTGTATTGCTGCTGGTGAGGGGAAGAAGCAGGATAGTGT-GGAGTTAAAGAA- 1282
Query 1409 AGC--GGAAAGAACTGGTCTAAAGGA-TGGAACTTTTGGGGATTGATTCAGAGGAAAA-C 1464
| | |||| ||| ||| | ||||| |||||| ||||||||||||| |||||||||| |
Sbjct 1283 ACCTAGGAA-GAAATGGCC-AAAGGGGTGGAACATTTGGGGATTGATACAGAGGAAAAGC 1340
Query 1465 TGATGTGGCGAAGAACGAAATGAAAACCGAGCAAAGTTTGAAACTTGGAGGAAATACTAT 1524
|| | | |||||||||| || ||||| ||||||||||||||||||| ||||||| | |
Sbjct 1341 -GA-G-G-CGAAGAACGAGATAAAAACTGAGCAAAGTTTGAAACTTGAAGGAAATGCGGT 1396
Query 1525 GGAGGGTTCTCTTG-CTGAGTCTTTGTTGAAGCTTAGGAGAGT-GGCTAAAGGAGAAACC 1582
||||||||| ||| |||||||| |||| |||||||||||||| || |||||||||||||
Sbjct 1397 TGAGGGTTCT-TTGGCTGAGTCTCTGTTAAAGCTTAGGAGAGTAGG-TAAAGGAGAAACC 1454
Query 1583 AATGGTGATGTCAGTGAGAAA-CTCAT-AAGAAGTTACAGCGTTAGTGCGAGAAAGTCTT 1640
||||||| ||| ||||| ||| || | || ||| || || || || ||||||||||| |
Sbjct 1455 AATGGTGGTGTTAGTGA-AAAGCTTTTGAA-AAGCTATAGTGTAAGAGCGAGAAAGTCAT 1512
Query 1641 GTGATGGTATG-TTACGTGGTGCTTCTATTGTTAATGGCTTTGAAGGTGGAAGAAGCTCT 1699
| |||||| || ||| || ||||| | | || | |||||||||||| |||||||| |||
Sbjct 1513 GCGATGGTGTGCTTA-GTAGTGCTGCCGTAGTCAGTGGCTTTGAAGGAGGAAGAAGTTCT 1571
Query 1700 TGTGATGGTCTATTTCATGGCTCTAT-AACTGGTGTTGAGACTGGAAGAAGAAGCTTGTG 1758
||||||||||| |||||||| ||||| ||| | ||||||| ||||||||| || |||
Sbjct 1572 TGTGATGGTCTGTTTCATGGATCTATTAACAG-TGTTGAGGTTGGAAGAAG---CTCGTG 1627
Query 1759 TGAAGACGGAATGTTTCATGGCGTTGA-AGGCAAACGGAATCATCTTCTCCAGAGTGATG 1817
||| |||| || || |||| |||| || |||||| ||||||||||||||||| | |
Sbjct 1628 TGA---CGGATTGGTTAATGGTATTGAGAG-CAAACGAAATCATCTTCTCCAGAGAAACG 1683
Query 1818 ACAA--GCTTGGTACTTACTCGCCT-GACAACCTCAGA-AATGGTATGGTTAGATTCTAC 1873
||| | ||||||| | | || || ||||| || || || || ||||||||||
Sbjct 1684 -CAAATG-TTGGTACGGGCGC-CCGAGAAAACCTT-GATAACAGTTTGTTTAGATTCTAT 1739
Query 1874 TTGACGCCATTAAACAGCCATATGACAAGCAAGTCCGGTAAAAGTAGGCTGATGAATTAG 1933
||||| || || ||||||| ||| ||||| || || ||||||||||||| |||||||
Sbjct 1740 TTGACTCCGGCAAGGAGCCATAAGACTAGCAAATCAGGGAAAAGTAGGCTGAAGAATTAG 1799
Query 1934 TC 1935
||
Sbjct 1800 TC 1801
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80789409645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5