BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58960.1
Length=1880
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496019 jgi|Araly1|496019|fgenesh2_kg.8__1835__AT5G58960.1 2712 0.0
> Ahg496019 jgi|Araly1|496019|fgenesh2_kg.8__1835__AT5G58960.1
Length=1842
Score = 2712 bits (1468), Expect = 0.0
Identities = 1736/1863 (93%), Gaps = 27/1863 (1%)
Strand=Plus/Plus
Query 21 TATATTGGAGTTCATCTCTTTTGTTTCTAAAGAAagagagagagagagagagagaagaga 80
|||||| ||||||||||| |||| |||||||| || ||||| | |||||||| |||||||
Sbjct 1 TATATTAGAGTTCATCTC-TTTGGTTCTAAAG-AA-AGAGA-A-AGAGAGAG-GAAGAGA 54
Query 81 agaTGTTGCCAGGCATACTATTATGCTCACTTAATCCCAGGAATCACAGCAAAAAGAAAA 140
| |||||||||||||| || ||||||||| ||||||| |||||||||||||||||||| |
Sbjct 55 AAATGTTGCCAGGCATTCTTTTATGCTCAGTTAATCCTAGGAATCACAGCAAAAAGAAGA 114
Query 141 AGAGTGAGCGAGAGAGCTTAGAAACTGAGCCCAAAGACATTGACTACTGGTACTCTGTTC 200
||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 115 AGATTGATCGAGAGAGCTTAGAAACTGAGCCCAAAGACATTGACTACTGGCGCTCTGTTC 174
Query 201 AATTCAATCGAGATCCTCCGAGATTCGCTCTCAAATCTGAGAATAACAATCACCATTCCC 260
||||||||||||||||||||||||| ||||||||||| ||||| | ||||||||||||||
Sbjct 175 AATTCAATCGAGATCCTCCGAGATTTGCTCTCAAATCAGAGAACACCAATCACCATTCCC 234
Query 261 GCAGTAAGAGCGGCGGCGATTTTTGCAAGAAGAAGAAGAGAGGAGAAATGGCGAACAAGG 320
|||| |||||||||||| ||| | |||| ||||||| |||||||||||||||||||||
Sbjct 235 GCAG---GAGCGGCGGCGAATTTGGGAAGACGAAGAAGCGAGGAGAAATGGCGAACAAGG 291
Query 321 TTTCTAACTTCTCGGATCTGATTCAACGAGTTACGGCGTCTTGTTTGTTGCATCCACTCT 380
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 292 TTTCTAACTTCTCGGATCTGATTCAACGAGTTACTGCGTCTTGTTTGTTGCATCCGCTCG 351
Query 381 CCGCCGGCCGGCAAGATCTCGCTGTG-AATCGCCGGGAAGAGTACGATACTGAAGAAGAG 439
|||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||
Sbjct 352 CCGCCGGCCGGCAAGATCTCGCTG-GAAACCGCCGGGAAGAGTACGATACTGAAGAAGAG 410
Query 440 GAGAATGAGGAGGAAGGTGAGATTCAGTACGAAGACGCATTGGAGAAGGAGAATGGTAAA 499
|||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 GAGAATGAGGGGGAGGGAGAGATTCAGTACGAAGACGCATTGGAGAAGGAGAATGGTAAA 470
Query 500 GATGAGACAATTAGGGCTAAGAACGGAAGGAACGGTGTGAGTGTTGAGACGGTGCAGGAG 559
|||||||| ||||||||||||| |||||||| ||| |||||||||||| || ||||||||
Sbjct 471 GATGAGACTATTAGGGCTAAGACCGGAAGGAGCGGCGTGAGTGTTGAGGCGTTGCAGGAG 530
Query 560 ATGGAGATGGTGATGGACG-AAGTTTTCACGGCGGCTGCTGCTATGAAGAGAGCTTACGT 618
||||||||||||||||| | |||||||||| ||||| |||||||||||||||||||||||
Sbjct 531 ATGGAGATGGTGATGGA-GCAAGTTTTCACAGCGGCGGCTGCTATGAAGAGAGCTTACGT 589
Query 619 TGCGCTTCAGGAAGCTCATTCGCCGTGGGATCCGGAGAAGATGCACGATGCTGATATGGC 678
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 GGCGCTTCAGGAAGCGCATTCGCCGTGGGATCCGGAGAAGATGCACGATGCTGATATGGC 649
Query 679 GATGGTGGCTGAGCTGAGAAGGATTGGTTCATTGAGGGAAAGATTCAGGAGGATGAGAGG 738
|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 650 CATGGTGGCTGAGCTGAGAAGGATTGGCTCGTTGAGGGAAAGATTCAGGAGGATGAGAGG 709
Query 739 TACCGGAAGTGGTGGTCGAAGGAAAAACGACGCCGGAAGAGGAATGCTGAGAGAGGCCGT 798
|||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||
Sbjct 710 TACCGGAAGTGGTGGTCGGCGGAAAAACGACGCCGGAAGAGGGATGCTGAGAGAGGCGGT 769
Query 799 GGCGCCTTATGAGGCGGTTGTGAAGGAGCTGAAGAAAGAAGTGAAAGTGAAAGATACTGA 858
|||||| || ||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 770 GGCGCCGTACGAGGCCGTTGTGAAGGAGCTGAAGAAAGAAGTGAAGGTGAAAGATACTGA 829
Query 859 GATTGAGAATCTGAAGGAGAAAGTCAAAGTGGC---TTCTATGGCCAACGGTAACGGAGG 915
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 830 GATTGAGAATCTGAAGGAGAAACTCAAAGTGGCTAGTTCTATGGCCAACGGTAACGGAGG 889
Query 916 CAAGAAACACCGATTGCTTTCAAGCCGGAAAGTTAACTGTACCACACAGATTGCTGTGTC 975
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 890 CAAGAAACACCGATTGCTTTCAAGCCGGAAAGTTAACTGCACCACACAGATCGCTGTATC 949
Query 976 TCCGGTGCCGGAGTTATTTGAGATGACAATGATTCAGGTGAAAGAAGCATCAAAGTCTTT 1035
||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 950 TCCTGTGCCGGAGTTATTCGAGATGACTATGATTCAGGTGAAAGAAGCATCAAAGTCTTT 1009
Query 1036 CACAGGGATTCTATTGTCACTAATGCGAGCTGCACATTGGGACATTGCAGCGGCTGTTCG 1095
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1010 CACAGGGATTCTATTGTCACTGATGCGAGCTGCGCATTGGGACATTGCAGCGGCTGTTCG 1069
Query 1096 ATCCATTGAAGCCGCTTCAGCTTCATCCGACGGAATGTCTGCTTCTTCGTTTGCATCCTC 1155
||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||
Sbjct 1070 ATCCATTGAAGCCGCTTCAGCTTCATCAGACGGAATGTCGGCTTCTTTGTTTGCATCCTC 1129
Query 1156 GGTTCAGTCATCTGTCCCGAACCAGCACGCGAAGTTTGCTCTTGAGTCTTACATCTGTAG 1215
||| ||||| |||||||||||||||||||| || |||||||||||||||||||||||| |
Sbjct 1130 GGTGCAGTCCTCTGTCCCGAACCAGCACGCCAAATTTGCTCTTGAGTCTTACATCTGTCG 1189
Query 1216 GAAAATCTTCCAAGGATTTGATCACGAAACGTTTTACATGGATGGAAGCTTATCTTCTCT 1275
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 GAAAATCTTCCAAGGATTCGATCACGAAACGTTTTACATGGATGGAAGCTTATCTTCTCT 1249
Query 1276 TATCAACCCGGATCAGTACCGTCGTGACTGCTTTGCGCAGTTCAAAGATATGAAAGCAAT 1335
||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1250 TATCAACCCGGATCAATACCGCCGTGACTGCTTCGCGCAGTTCAAAGATATGAAAGCAAT 1309
Query 1336 GGATCCTATGGAGTTGCTAGGGATCTTACCAACTTGCCATTTTGGTAAATTCTGCTCGAA 1395
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||
Sbjct 1310 GGATCCTATGGAGTTGCTAGGGATCTTACCGACTTGCCATTTTGGTAAGTTCTGCTCAAA 1369
Query 1396 GAAGTACCTTTCGATCATTCACCAAAAAATGGAAGAGTCGTTGTTCGGGGACTCGGAACA 1455
|||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1370 GAAGTATCTTTCGATCATTCACCACAAAATGGAAGAGTCGTTGTTCGGCGACTCGGAACA 1429
Query 1456 GCGGGAGTTGGTTGTAGCCGGTAACCACCCAAGAAGTCAGTTCTATGGAGAGTTCTTGGG 1515
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1430 GCGGGAGCTGGTTCTAGCCGGTAACCACCCAAGAAGTCAGTTCTATGGAGAGTTCTTGGG 1489
Query 1516 GCTAGCTAAAGCAGTCTGGCTGCTTCATCTCCTGGCATTCTCGCTCGACCCATCCCCGAG 1575
|||||||||| ||||||||||||||||| |||| ||||||||||| |||||||| ||
Sbjct 1490 ATTAGCTAAAGCGGTCTGGCTGCTTCATCTTTTGGCGTTCTCGCTCGATCCATCCCCAAG 1549
Query 1576 TCACTTTGAAGCAAACAGAGGAGCCGAGTTTCACTCTCAGTACATGGAGAGTGTCGTGAG 1635
|||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1550 TCACTTTGAAGCAAACCGAGGAGCTGAGTTTCACTCTCAGTACATGGAGAGCGTCGTGAA 1609
Query 1636 GTTTTCGGATGGCCGTGTTCCTGCGGGTCAAGTTGTTGGATTTCCTGTTTGTCCAGGATT 1695
||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1610 GTTCTCGGATGGCCGTGTTCCTGTGGGTCAAGTTGTTGGGTTTCCTGTTTGTCCAGGATT 1669
Query 1696 CAAGCTTAGCCATCAAGGGAAAGGATCAATCATCAAATCCAGAGTTTACTTGGTTCCAAG 1755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1670 CAAGCTTAGCCATCAAGGGAAAGGATCAATCATCAAATCCAGAGTTTACTTGGTTCCAAG 1729
Query 1756 GGCTTAAAAAGGTTT-CTTTGAGTTCACTGTTTCTTAGGAATACATTATGTCCTCGTGTG 1814
||||||||| ||||| | ||||||||||||||||||||||||| |||||| | || ||
Sbjct 1730 GGCTTAAAACGGTTTTCATTGAGTTCACTGTTTCTTAGGAATATATTATGGC---GT-TG 1785
Query 1815 TTGTTTAAGACTTTAAGACAATCTAGCTTCGGAAAAATCTTGAAATAAAGAGACCGTTCG 1874
| ||| | |||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1786 T-GTT---G--TTTAAGACAATCTAGCTTTGGAAAAATCTTGAAATAAAGAGATCGTTCA 1839
Query 1875 TAT 1877
|||
Sbjct 1840 TAT 1842
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70619314230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5