BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58970.1
Length=1339
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496022 jgi|Araly1|496022|fgenesh2_kg.8__1838__AT5G58970.1 1701 0.0
> Ahg496022 jgi|Araly1|496022|fgenesh2_kg.8__1838__AT5G58970.1
Length=1243
Score = 1701 bits (921), Expect = 0.0
Identities = 1179/1294 (91%), Gaps = 56/1294 (4%)
Strand=Plus/Plus
Query 1 GAGAGACTCTGTACTTGTTCTGAATTCGTTACGCCATTATTAAATCTCGATCTCACTTTT 60
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 GAGAGACTGTGTACTTGTTCTGAATTCGTTACGCC---ATTAAATCTCGATCTCACTTTT 57
Query 61 CTTCATTACTACTCCTAAAAACTATAATCATTGAGAAACCCATTTTAAGATTACATCA-A 119
||| |||||||||||||| | ||| || ||||||||||| |||||||||| || | |
Sbjct 58 CTTTATTACTACTCCTAATCATTAT-ATTGTTGAGAAACCCTTTTTAAGATT--ATTATA 114
Query 120 TC-ATCATCGCTGTTAGAGAGAAACTGGAGCAACTTCTCAAATTTTAGCCtttttttgtt 178
|| ||||| | | | |||| | || | | || || ||||||| ||
Sbjct 115 TCAATCAT--C-G-T----CGAAATTTTAG---C-T-TC-----TT----TTTTTTT-TT 151
Query 179 tttGCATTTTGCCTAATCGGTGCTTCTCCAGATTTCGCTTATCTTGTTCCTATAGCATAA 238
||||||||| ||| |||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 152 TTTGCATTTAGCCCAATCGGTGCTTCCCCAGATTTCGCTTATCTTGTTCCCATAGCATAA 211
Query 239 CAATGGCGGATTTCAAACCAAGGATCGAGATTTCGTTCCTTGAAACCTTCATTTGCAGCG 298
||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| ||||
Sbjct 212 CAATGGCCGATTTCAAACCCAGGATCGAGATTTCCTTCCTTGAAACCTTCATTTGTAGCG 271
Query 299 CTTTCGCTGCTTGTTTTGCTGAGTTATGTACTATACCGTTGGACACAGCCAAAGTTAGAC 358
||||||||||||||||||| ||||||||||||||||| |||||||| || ||||| || |
Sbjct 272 CTTTCGCTGCTTGTTTTGCAGAGTTATGTACTATACCATTGGACACTGCTAAAGTAAGGC 331
Query 359 TTCAGCTTCAAAGAAAGATTCCCACTGGAGATGGTGAGAATTTGCCCAAGTATAGAGGAT 418
|||||||||||||||||||||| || |||||||||||||||||||| ||||||||||| |
Sbjct 332 TTCAGCTTCAAAGAAAGATTCCTACAGGAGATGGTGAGAATTTGCCTAAGTATAGAGGTT 391
Query 419 CAATTGGTACTCTAGCTACCATAGCTAGAGAAGAAGGTATTTCAGGTCTTTGGAAAGGTG 478
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 392 CAATTGGTACTCTAGCTACCATAGCTAGAGAAGAAGGTATTTCGGGACTTTGGAAAGGTG 451
Query 479 TTATTGCAGGACTTCATCGCCAATGTATCTATGGTGGCTTAAGGATTGGGTTATATGAGC 538
| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 452 TGATTGCGGGACTGCATCGCCAATGTATCTATGGTGGCTTAAGGATTGGGTTATATGAGC 511
Query 539 CTGTGAAGACACTTTTGGTTGGAAGTGACTTTATTGGCGATATTCCTTTATATCAAAAGA 598
|||| |||||| ||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 512 CTGTCAAGACATTTTTGGTTGGAAGTGACTTTATTGGTGATATTCCATTATATCAAAAGA 571
Query 599 TTCTTGCAGCTTTGTTAACTGGAGCTATAGCTATTATTGTAGCTAATCCAACTGATCTTG 658
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 572 TTCTTGCAGCTTTGTTAACCGGAGCTATAGCTATTATTGTAGCTAATCCAACTGATCTTG 631
Query 659 TTAAAGTTCGGCTTCAATCAGAAGGAAAGTTACCGGCTGGGGTTCCTAGGCGTTATGCAG 718
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 632 TTAAAGTTCGGCTTCAGTCAGAAGGAAAATTACCGGCTGGGGTTCCTAGGCGTTATGCAG 691
Query 719 GAGCTGTAGACGCTTATTTCACCATTGTGAAGCTGGAAGGAGTTAGTGCGCTATGGACTG 778
|||||||||||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 692 GAGCTGTAGACGCTTATTTCACAATAGTTAAGCTGGAAGGAGTTAGTGCGCTATGGACTG 751
Query 779 GACTTGGTCCCAATATTGCCCGGAATGCTATTGTAAATGCTGCAGAGTTAGCTAGTTATG 838
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 752 GACTTGGTCCCAACATTGCCCGGAATGCTATTGTAAATGCTGCAGAGTTAGCTAGTTATG 811
Query 839 ATCAAATAAAGGAGACAATTATGAAAATTCCGTTCTTCAGAGACAGTGTTTTAACTCATC 898
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 812 ATCAAATAAAGGAGACAATTATGAAAATTCCATTCTTCAGAGACAGTGTTTTGACTCATC 871
Query 899 TACTAGCTGGTTTAGCTGCAGGCTTCTTCGCTGTCTGCATCGGTTCTCCAATTGATGTGG 958
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 872 TACTAGCTGGTTTAGCTGCAGGCTTCTTCGCTGTCTGCATTGGTTCTCCAATTGATGTGG 931
Query 959 TGAAATCTAGAATGATGGGAGACTCTACTTACCGAAACACAGTCGATTGCTTCATCAAAA 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 932 TGAAATCTAGAATGATGGGAGACTCTACTTACCGAAACACAGTCGATTGCTTCATCAAAA 991
Query 1019 CGATGAAGACCGAGGGGATTATGGCATTCTACAAAGGATTTCTCCCGAATTTTACACGGC 1078
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 992 CCATGAAGACCGAGGGGATTATGGCATTCTACAAAGGATTTCTCCCGAATTTTACACGGC 1051
Query 1079 TAGGAACCTGGAATGCCATTATGTTCCTCACATTAGAACAAGTGAAAAAAGTGTTTCTAA 1138
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1052 TAGGAACCTGGAACGCCATTATGTTCCTCACACTAGAACAAGTGAAAAAAGTGTTTCTAA 1111
Query 1139 GAGAAGTCTTGTACGATTGATTCTC-AGATCCCTAGTCGAAAA-CCATACCTTATTACAT 1196
|||||||| ||||||||||||| || |||||||| || ||||| ||||||||||||||||
Sbjct 1112 GAGAAGTCCTGTACGATTGATT-TCGAGATCCCTCGTAGAAAAACCATACCTTATTACAT 1170
Query 1197 AATCCCTTCTATAAAACTTTGAATTGTTAGAATT-AAAACATATATACTTTCTATGTTAT 1255
||| | | || | || |||||| |||||||||| ||| |||||||||
Sbjct 1171 AAT-------A-A----TT-G--TT---AGAATTTAAAACATATA--CTT-CTATGTTAT 1209
Query 1256 GTGAGCTTTGTTATTTAGATTAGTATAGAAACAT 1289
|||||||||||||||||| ||| |||| ||||||
Sbjct 1210 GTGAGCTTTGTTATTTAGCTTAATATAAAAACAT 1243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50093512938
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5