BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G58970.1 Length=1339 Score E Sequences producing significant alignments: (Bits) Value Ahg496022 jgi|Araly1|496022|fgenesh2_kg.8__1838__AT5G58970.1 1701 0.0 > Ahg496022 jgi|Araly1|496022|fgenesh2_kg.8__1838__AT5G58970.1 Length=1243 Score = 1701 bits (921), Expect = 0.0 Identities = 1179/1294 (91%), Gaps = 56/1294 (4%) Strand=Plus/Plus Query 1 GAGAGACTCTGTACTTGTTCTGAATTCGTTACGCCATTATTAAATCTCGATCTCACTTTT 60 |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1 GAGAGACTGTGTACTTGTTCTGAATTCGTTACGCC---ATTAAATCTCGATCTCACTTTT 57 Query 61 CTTCATTACTACTCCTAAAAACTATAATCATTGAGAAACCCATTTTAAGATTACATCA-A 119 ||| |||||||||||||| | ||| || ||||||||||| |||||||||| || | | Sbjct 58 CTTTATTACTACTCCTAATCATTAT-ATTGTTGAGAAACCCTTTTTAAGATT--ATTATA 114 Query 120 TC-ATCATCGCTGTTAGAGAGAAACTGGAGCAACTTCTCAAATTTTAGCCtttttttgtt 178 || ||||| | | | |||| | || | | || || ||||||| || Sbjct 115 TCAATCAT--C-G-T----CGAAATTTTAG---C-T-TC-----TT----TTTTTTT-TT 151 Query 179 tttGCATTTTGCCTAATCGGTGCTTCTCCAGATTTCGCTTATCTTGTTCCTATAGCATAA 238 ||||||||| ||| |||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 152 TTTGCATTTAGCCCAATCGGTGCTTCCCCAGATTTCGCTTATCTTGTTCCCATAGCATAA 211 Query 239 CAATGGCGGATTTCAAACCAAGGATCGAGATTTCGTTCCTTGAAACCTTCATTTGCAGCG 298 ||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| |||| Sbjct 212 CAATGGCCGATTTCAAACCCAGGATCGAGATTTCCTTCCTTGAAACCTTCATTTGTAGCG 271 Query 299 CTTTCGCTGCTTGTTTTGCTGAGTTATGTACTATACCGTTGGACACAGCCAAAGTTAGAC 358 ||||||||||||||||||| ||||||||||||||||| |||||||| || ||||| || | Sbjct 272 CTTTCGCTGCTTGTTTTGCAGAGTTATGTACTATACCATTGGACACTGCTAAAGTAAGGC 331 Query 359 TTCAGCTTCAAAGAAAGATTCCCACTGGAGATGGTGAGAATTTGCCCAAGTATAGAGGAT 418 |||||||||||||||||||||| || |||||||||||||||||||| ||||||||||| | Sbjct 332 TTCAGCTTCAAAGAAAGATTCCTACAGGAGATGGTGAGAATTTGCCTAAGTATAGAGGTT 391 Query 419 CAATTGGTACTCTAGCTACCATAGCTAGAGAAGAAGGTATTTCAGGTCTTTGGAAAGGTG 478 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 392 CAATTGGTACTCTAGCTACCATAGCTAGAGAAGAAGGTATTTCGGGACTTTGGAAAGGTG 451 Query 479 TTATTGCAGGACTTCATCGCCAATGTATCTATGGTGGCTTAAGGATTGGGTTATATGAGC 538 | ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 452 TGATTGCGGGACTGCATCGCCAATGTATCTATGGTGGCTTAAGGATTGGGTTATATGAGC 511 Query 539 CTGTGAAGACACTTTTGGTTGGAAGTGACTTTATTGGCGATATTCCTTTATATCAAAAGA 598 |||| |||||| ||||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct 512 CTGTCAAGACATTTTTGGTTGGAAGTGACTTTATTGGTGATATTCCATTATATCAAAAGA 571 Query 599 TTCTTGCAGCTTTGTTAACTGGAGCTATAGCTATTATTGTAGCTAATCCAACTGATCTTG 658 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 572 TTCTTGCAGCTTTGTTAACCGGAGCTATAGCTATTATTGTAGCTAATCCAACTGATCTTG 631 Query 659 TTAAAGTTCGGCTTCAATCAGAAGGAAAGTTACCGGCTGGGGTTCCTAGGCGTTATGCAG 718 |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 632 TTAAAGTTCGGCTTCAGTCAGAAGGAAAATTACCGGCTGGGGTTCCTAGGCGTTATGCAG 691 Query 719 GAGCTGTAGACGCTTATTTCACCATTGTGAAGCTGGAAGGAGTTAGTGCGCTATGGACTG 778 |||||||||||||||||||||| || || ||||||||||||||||||||||||||||||| Sbjct 692 GAGCTGTAGACGCTTATTTCACAATAGTTAAGCTGGAAGGAGTTAGTGCGCTATGGACTG 751 Query 779 GACTTGGTCCCAATATTGCCCGGAATGCTATTGTAAATGCTGCAGAGTTAGCTAGTTATG 838 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 752 GACTTGGTCCCAACATTGCCCGGAATGCTATTGTAAATGCTGCAGAGTTAGCTAGTTATG 811 Query 839 ATCAAATAAAGGAGACAATTATGAAAATTCCGTTCTTCAGAGACAGTGTTTTAACTCATC 898 ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 812 ATCAAATAAAGGAGACAATTATGAAAATTCCATTCTTCAGAGACAGTGTTTTGACTCATC 871 Query 899 TACTAGCTGGTTTAGCTGCAGGCTTCTTCGCTGTCTGCATCGGTTCTCCAATTGATGTGG 958 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 872 TACTAGCTGGTTTAGCTGCAGGCTTCTTCGCTGTCTGCATTGGTTCTCCAATTGATGTGG 931 Query 959 TGAAATCTAGAATGATGGGAGACTCTACTTACCGAAACACAGTCGATTGCTTCATCAAAA 1018 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 932 TGAAATCTAGAATGATGGGAGACTCTACTTACCGAAACACAGTCGATTGCTTCATCAAAA 991 Query 1019 CGATGAAGACCGAGGGGATTATGGCATTCTACAAAGGATTTCTCCCGAATTTTACACGGC 1078 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 992 CCATGAAGACCGAGGGGATTATGGCATTCTACAAAGGATTTCTCCCGAATTTTACACGGC 1051 Query 1079 TAGGAACCTGGAATGCCATTATGTTCCTCACATTAGAACAAGTGAAAAAAGTGTTTCTAA 1138 ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1052 TAGGAACCTGGAACGCCATTATGTTCCTCACACTAGAACAAGTGAAAAAAGTGTTTCTAA 1111 Query 1139 GAGAAGTCTTGTACGATTGATTCTC-AGATCCCTAGTCGAAAA-CCATACCTTATTACAT 1196 |||||||| ||||||||||||| || |||||||| || ||||| |||||||||||||||| Sbjct 1112 GAGAAGTCCTGTACGATTGATT-TCGAGATCCCTCGTAGAAAAACCATACCTTATTACAT 1170 Query 1197 AATCCCTTCTATAAAACTTTGAATTGTTAGAATT-AAAACATATATACTTTCTATGTTAT 1255 ||| | | || | || |||||| |||||||||| ||| ||||||||| Sbjct 1171 AAT-------A-A----TT-G--TT---AGAATTTAAAACATATA--CTT-CTATGTTAT 1209 Query 1256 GTGAGCTTTGTTATTTAGATTAGTATAGAAACAT 1289 |||||||||||||||||| ||| |||| |||||| Sbjct 1210 GTGAGCTTTGTTATTTAGCTTAATATAAAAACAT 1243 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50093512938 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5