BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59000.1
Length=1354
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496027 jgi|Araly1|496027|fgenesh2_kg.8__1843__AT5G59000.1 1229 0.0
> Ahg496027 jgi|Araly1|496027|fgenesh2_kg.8__1843__AT5G59000.1
Length=849
Score = 1229 bits (665), Expect = 0.0
Identities = 820/887 (92%), Gaps = 41/887 (5%)
Strand=Plus/Plus
Query 434 aaaaaaaTGCCTTCTTTTGCTTTTGGATCTCATCACCATTTGGCGAATCCTACAGACTCG 493
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 AAAAAAATGCCTTCTTTTGCTTTTGGATCTCATCACCATTTGGCGAATCCTAGAGACT-- 58
Query 494 CCGCCGTACTCCGTCGAAATTAGCATCGACGGTGACTCCTCCGACTGGGATTCTTTGTCT 553
||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 59 -CGCCGTACTCCGTCGAAATTAGCGTCGACGGTGACTCCTCCGACTTGGATTCTTTGTCT 117
Query 554 CAGGTCGATTTAGAGTCCGGCGGTGTACCGGCGCCGGAGAAACAGCTACATTCCGGTGGT 613
||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct 118 GAGGTCGATTTAGAGTCCGGCGGTGTACCGGCGCCGGAGAAAAAGGTACATTCCTGTGGT 177
Query 614 aagaagaggagaactaggaggagaaagaggaggaagaagaagaagaagaagaaaggtgga 673
|||||||||||||| |||||||| ||||||| | |||||||||||||||||||||||||
Sbjct 178 AAGAAGAGGAGAACAAGGAGGAGGAAGAGGA-G--GAAGAAGAAGAAGAAGAAAGGTGGA 234
Query 674 agagaTTGCAGGATCTGTCATCTTCCTTTAGAGACTAACAaagaagctgaagatgaagat 733
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 235 AGAGATTGCAGGATCTGTCATCTTCCTTTAGAGACTAACAAAGAAGCTGAAGAAGAAGAA 294
Query 734 gaagaagaagaagatgattctgatgatgatgaagatgaagaagatgaagaagaagaagaa 793
|||||||||||||| | |||||| | ||| |||||| ||||| ||||||
Sbjct 295 GAAGAAGAAGAAGA--A----GATGAT--T----CTGATGAAGAT---GAAGATGAAGAA 339
Query 794 gaagaagaagaagaagaaTATTATGGTTTGCCTTTGCAATTAGGTTGCTCTTGTAAAGGT 853
||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 340 GAAGAAGAAGAAG-AG--TATTATGGTTTACCTTTGCAATTAGGTTGCTCTTGTAAAGGT 396
Query 854 GATTTGGGTGTTGCTCATAGTAAGTGTGCTGAGACTTGGTTTAAGATCAAAGGAAACATG 913
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 397 GATTTGGGTGTAGCTCATAGTAAGTGTGCTGAGACTTGGTTCAAGATCAAAGGAAACATG 456
Query 914 ACATGTGAGATATGCGGCGCAATGGCTCTAAACGTGGCTGGTGAACAATCTAATCCGGAG 973
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 457 ACATGTGAGATATGCGGCACAATGGCTCTAAACGTGGCTGGTGAACAATCAAATCCGGAG 516
Query 974 AGCACTGCTTCTACACATTCACAAGCAGCTGC-G--GGACAATCTCTAACTCAGACAGAG 1030
|||||||| ||||| || |||||||||||||| | |||||||||| |||||||||||||
Sbjct 517 AGCACTGCCTCTACCCACTCACAAGCAGCTGCGGCAGGACAATCTCAAACTCAGACAGAG 576
Query 1031 CCACGAGGAATCTGGCATGGTCGCCCTGTTATGAACTTCTTACTTGCTGCTATGGTCTTC 1090
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 CCACGGGGAATCTGGCATGGTCGCCCTGTTATGAACTTCTTACTTGCTGCTATGGTCTTC 636
Query 1091 GCCTTCGTTGTTTCTTGGCTTTTTCACTTCAAAGTCCTCAAGTGAAACGTTTTCCAtctc 1150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 GCCTTCGTTGTTTCTTGGCTTTTTCACTTCAAAGTCCTCAAGTGAAACGTTTTCCATCTC 696
Query 1151 tctctctctctctctctctctTTCGCCCACCCGCACGAGCTCACTCTTCTCCTGTTCTTG 1210
||||||| | || ||||||||||||| ||||||||||||||||||||||
Sbjct 697 TCTCTCT-T-TC------------GCCCACCCGCACGCGCTCACTCTTCTCCTGTTCTTG 742
Query 1211 AGCCGCTTGCAATCGCTGAATCAATCCCTCCTGTTGCTTGATTATTCACACGTTTTGTAG 1270
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 743 AGCCGCTTGCTATCGCTGAATCAATCCCTCCTGTTGCTTGATTATTCACACGTTTTGTAG 802
Query 1271 CTGTAAAAACTTGGTAGTGTTTAGATTGTTGTAACTTGTGAGATTTA 1317
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 CTGTAAAAACTTGGTAGTGTTTAGATTGTTGTAACTTGTGAGATTTA 849
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50665356693
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5