BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G59000.1 Length=1354 Score E Sequences producing significant alignments: (Bits) Value Ahg496027 jgi|Araly1|496027|fgenesh2_kg.8__1843__AT5G59000.1 1229 0.0 > Ahg496027 jgi|Araly1|496027|fgenesh2_kg.8__1843__AT5G59000.1 Length=849 Score = 1229 bits (665), Expect = 0.0 Identities = 820/887 (92%), Gaps = 41/887 (5%) Strand=Plus/Plus Query 434 aaaaaaaTGCCTTCTTTTGCTTTTGGATCTCATCACCATTTGGCGAATCCTACAGACTCG 493 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1 AAAAAAATGCCTTCTTTTGCTTTTGGATCTCATCACCATTTGGCGAATCCTAGAGACT-- 58 Query 494 CCGCCGTACTCCGTCGAAATTAGCATCGACGGTGACTCCTCCGACTGGGATTCTTTGTCT 553 ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 59 -CGCCGTACTCCGTCGAAATTAGCGTCGACGGTGACTCCTCCGACTTGGATTCTTTGTCT 117 Query 554 CAGGTCGATTTAGAGTCCGGCGGTGTACCGGCGCCGGAGAAACAGCTACATTCCGGTGGT 613 ||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| Sbjct 118 GAGGTCGATTTAGAGTCCGGCGGTGTACCGGCGCCGGAGAAAAAGGTACATTCCTGTGGT 177 Query 614 aagaagaggagaactaggaggagaaagaggaggaagaagaagaagaagaagaaaggtgga 673 |||||||||||||| |||||||| ||||||| | ||||||||||||||||||||||||| Sbjct 178 AAGAAGAGGAGAACAAGGAGGAGGAAGAGGA-G--GAAGAAGAAGAAGAAGAAAGGTGGA 234 Query 674 agagaTTGCAGGATCTGTCATCTTCCTTTAGAGACTAACAaagaagctgaagatgaagat 733 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 235 AGAGATTGCAGGATCTGTCATCTTCCTTTAGAGACTAACAAAGAAGCTGAAGAAGAAGAA 294 Query 734 gaagaagaagaagatgattctgatgatgatgaagatgaagaagatgaagaagaagaagaa 793 |||||||||||||| | |||||| | ||| |||||| ||||| |||||| Sbjct 295 GAAGAAGAAGAAGA--A----GATGAT--T----CTGATGAAGAT---GAAGATGAAGAA 339 Query 794 gaagaagaagaagaagaaTATTATGGTTTGCCTTTGCAATTAGGTTGCTCTTGTAAAGGT 853 ||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||| Sbjct 340 GAAGAAGAAGAAG-AG--TATTATGGTTTACCTTTGCAATTAGGTTGCTCTTGTAAAGGT 396 Query 854 GATTTGGGTGTTGCTCATAGTAAGTGTGCTGAGACTTGGTTTAAGATCAAAGGAAACATG 913 ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 397 GATTTGGGTGTAGCTCATAGTAAGTGTGCTGAGACTTGGTTCAAGATCAAAGGAAACATG 456 Query 914 ACATGTGAGATATGCGGCGCAATGGCTCTAAACGTGGCTGGTGAACAATCTAATCCGGAG 973 |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 457 ACATGTGAGATATGCGGCACAATGGCTCTAAACGTGGCTGGTGAACAATCAAATCCGGAG 516 Query 974 AGCACTGCTTCTACACATTCACAAGCAGCTGC-G--GGACAATCTCTAACTCAGACAGAG 1030 |||||||| ||||| || |||||||||||||| | |||||||||| ||||||||||||| Sbjct 517 AGCACTGCCTCTACCCACTCACAAGCAGCTGCGGCAGGACAATCTCAAACTCAGACAGAG 576 Query 1031 CCACGAGGAATCTGGCATGGTCGCCCTGTTATGAACTTCTTACTTGCTGCTATGGTCTTC 1090 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 577 CCACGGGGAATCTGGCATGGTCGCCCTGTTATGAACTTCTTACTTGCTGCTATGGTCTTC 636 Query 1091 GCCTTCGTTGTTTCTTGGCTTTTTCACTTCAAAGTCCTCAAGTGAAACGTTTTCCAtctc 1150 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 637 GCCTTCGTTGTTTCTTGGCTTTTTCACTTCAAAGTCCTCAAGTGAAACGTTTTCCATCTC 696 Query 1151 tctctctctctctctctctctTTCGCCCACCCGCACGAGCTCACTCTTCTCCTGTTCTTG 1210 ||||||| | || ||||||||||||| |||||||||||||||||||||| Sbjct 697 TCTCTCT-T-TC------------GCCCACCCGCACGCGCTCACTCTTCTCCTGTTCTTG 742 Query 1211 AGCCGCTTGCAATCGCTGAATCAATCCCTCCTGTTGCTTGATTATTCACACGTTTTGTAG 1270 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 743 AGCCGCTTGCTATCGCTGAATCAATCCCTCCTGTTGCTTGATTATTCACACGTTTTGTAG 802 Query 1271 CTGTAAAAACTTGGTAGTGTTTAGATTGTTGTAACTTGTGAGATTTA 1317 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 803 CTGTAAAAACTTGGTAGTGTTTAGATTGTTGTAACTTGTGAGATTTA 849 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50665356693 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5