BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59010.1
Length=1846
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496029 jgi|Araly1|496029|fgenesh2_kg.8__1845__AT5G59010.1 2904 0.0
> Ahg496029 jgi|Araly1|496029|fgenesh2_kg.8__1845__AT5G59010.1
Length=1801
Score = 2904 bits (1572), Expect = 0.0
Identities = 1698/1760 (96%), Gaps = 3/1760 (0%)
Strand=Plus/Plus
Query 88 aaaaaaaaaaGGGTTTTTGCTTTTCGGGTTTAGCTAAGAA-AAATCTTTCAATCTTCCTT 146
|||||||||| ||||||||||||||| ||||||||||||| ||||||||| |||||||||
Sbjct 44 AAAAAAAAAAAGGTTTTTGCTTTTCGAGTTTAGCTAAGAAGAAATCTTTCTATCTTCCTT 103
Query 147 AAATCTTTCAAAACCCCAAAATGGGACCTCGTTGCTCTAAGCTCTCTCTCTGTTGGTGGC 206
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 104 AAATCTTT-GAAA-CCCAAAATGGGACCTCGTTGCTCTAAGCTCTCTCTCTGTTGGTGGC 161
Query 207 CGACCCATCTCAAATCAACTCACAACGAAGCTTCTGATCTAGATAACGGAACGGACGATT 266
|||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 162 CGACCCATCTCAAAACAACTCACAACGACGCTTCTGATCTAGATAACGGAACAGACGATT 221
Query 267 TGCCGTCGTTTACGGAGTTTAGTTTCGACCAACTACGAGCTGCTACTTGTGGATTCTCTA 326
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 222 TGCCGTCGTTTACAGAGTTCAGTTTCGACCAACTACGAGCTGCTACTTGTGGATTCTCTA 281
Query 327 CAGACAGTATTGTCTCCGAACATGGTGTTAAAGCTCCTAATGTTGTGTATAAAGGCAGAC 386
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 CGGACAGTATCGTCTCCGAACATGGTGTTAAAGCTCCTAATGTTGTGTATAAAGGCAGAC 341
Query 387 TTGAAGATGACCGATGGATCGCTGTTAAACGATTCAATAGATCCGCTTGGCCTGATACTC 446
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 342 TTGAAGATGACCGATGGATCGCTGTTAAACGCTTCAATAGATCCGCTTGGCCTGATACTC 401
Query 447 GTCAATTTCTTGAAGAAGCAAAAGCTGTGGGGCAGTTGAGGAATGAGAGGTTGGCGAATT 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 GTCAATTTCTTGAAGAAGCAAAAGCTGTGGGGCAGTTGAGGAATGAGAGGTTGGCGAATT 461
Query 507 TGATTGGATTCTGTTGTGAAGGAGACGAGAGATTGCTCGTTGCTGAGTTTATGCCTTTTG 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 462 TGATTGGATTCTGTTGTGAAGGAGACGAGAGATTGCTCGTTGCTGAGTTTATGCCTTTTG 521
Query 567 AAACTCTCTCGAAGCATCTCTTTCACTGGGATAGTCAGCCAATGAAGTGGTCTATGAGGT 626
|||||||||| ||||||||||| || |||||||| |||||||||||||||||||||||||
Sbjct 522 AAACTCTCTCTAAGCATCTCTTCCATTGGGATAGCCAGCCAATGAAGTGGTCTATGAGGT 581
Query 627 TGAGAGTGGCTTTGTATCTTGCACAAGCACTTGAGTATTGTAGCAGCAAAGGTCGCGCCT 686
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 582 TGAGAGTGGCTTTGTATCTTGCACAAGCACTTGAGTATTGCAGCAGCAAAGGTCGCGCCT 641
Query 687 TGTACCACGATCTTAATGCTTACAGGATCTTGTTTGACCAGGATGGTAACCCGAGATTAT 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 TGTACCACGATCTTAATGCTTACAGGATCTTGTTTGACCAGGATGGTAACCCGAGATTAT 701
Query 747 CTTGCTTTGGTCTTATGAAGAATAGTAGGGATGGGAAGAGTTACAGTACAAATTTGGCTT 806
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 CTTGCTTCGGTCTTATGAAGAATAGTAGGGATGGGAAGAGTTACAGTACAAATTTGGCTT 761
Query 807 TCACACCTCCTGAATACCTAAGAACAGGGAGAGTGATTCCGGAGAGTGTGGTCTACAGCT 866
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 762 TCACACCTCCTGAATACCTAAGAACAGGGAGAGTGATTCCGGAGAGCGTGGTCTACAGCT 821
Query 867 TCGGAACGCTGTTGCTAGATCTTCTCAGCGGCAAACACATACCACCAAGCCATGCGCTTG 926
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 822 TCGGAACGCTGTTGCTAGATCTTCTCAGTGGCAAACACATACCACCAAGCCATGCGCTTG 881
Query 927 ATCTGATTCGTGGGAAGAATTTCCTGATGCTGATGGACTCGTGTCTAGATGGCCATTTCT 986
||||||||||||| |||||||||||||||||||||||||| |||||||| || |||||||
Sbjct 882 ATCTGATTCGTGGCAAGAATTTCCTGATGCTGATGGACTCTTGTCTAGACGGTCATTTCT 941
Query 987 CAAACGATGATGGAACCGATTTGGTTCGTTTAGCTTCCCGTTGTTTGCAGTATGAAGCTC 1046
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 942 CAAACGATGATGGAACCGATTTGGTTCGCTTAGCTTCCCGTTGTTTGCAGTATGAAGCTC 1001
Query 1047 GTGAAAGGCCAAATGTGAAATCTCTCGTGTCCTCACTCGCTCCTCTTCAGAAAGAAACTG 1106
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1002 GTGAAAGGCCAAATGTGAAATCTCTCGTGTCCTCACTGGCTCCTCTTCAGAAAGAAACTG 1061
Query 1107 ATATTCCGTCTCATGTTTTAATGGGGATTCCACATGGAGCTGCTTCTCCAAAGGAAACAA 1166
||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1062 ATATTCCGTCTTATGTCTTAATGGGAATTCCACATGGAGCTGCTTCTCCAAAGGAAACAA 1121
Query 1167 CTTCGCTTACCCCTCTTGGTGACGCTTGTTCACGACATGATCTCACAGCAATACATGAAA 1226
||||||| |||||||||||||||||||||||| ||| ||||||||| || ||||||||||
Sbjct 1122 CTTCGCTAACCCCTCTTGGTGACGCTTGTTCAAGACTTGATCTCACCGCGATACATGAAA 1181
Query 1227 TTCTCGAAAAGGTTGGATACAAAGATGACGAGGGTGTAGCAAATGAGCTCTCGTTCCAAG 1286
|||| |||||||| |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1182 TTCTTGAAAAGGTGGGATACAAAGATGACGAGGGCGTAGCTAATGAGCTCTCGTTCCAAG 1241
Query 1287 TGTGGACCGACCAGATTCAGGAGACTCTAAACTCCAAGAAACAAGGAGATGCTGCGTTCA 1346
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1242 TGTGGACTGACCAGATTCAGGAGACTCTAAACTCAAAGAAACAAGGAGATGCTGCGTTCA 1301
Query 1347 AAGGCAAAGACTTTGTCACTGCTGTTGAATGTTACACGCAGTTCATCGAAGATGGCACAA 1406
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1302 AAGGCAAAGACTTTGTCACTGCCGTTGAATGTTACACGCAGTTCATCGAAGATGGTACAA 1361
Query 1407 TGGTATCGCCAACAGTTTTTGCAAGGAGGTGTTTGTGTTATCTGATGAGCAATATGCCTC 1466
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1362 TGGTATCGCCAACAGTTTTTGCAAGGAGGTGTTTGTGTTATCTAATGAGCAATATGCCTC 1421
Query 1467 AAGAGGCTCTTGGTGATGCAATGCAGGCGCAAGTAGTGTCTCCTGAATGGCCAACGGCTT 1526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1422 AAGAGGCTCTTGGTGATGCAATGCAGGCGCAAGTAGTGTCTCCTGAATGGCCAACGGCTT 1481
Query 1527 TCTATCTTCAGGCCGCTGCTCTCTTCAGCCTTGGAATGGATAAAGACGCCTGTGAAACCC 1586
| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1482 TTTATCTTCAGGCTGCTGCTCTCTTCAGCCTTGGAATGGATAAAGACGCCTGCGAAACCC 1541
Query 1587 TAAAAGATGGAACTTCCTTGGAAGCCAAGAAACATAACAACAGAAACTGAAAACTTCAAG 1646
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1542 TAAAAGATGGAACTTCCTTGGAAGCCAAGAAACAGAACAACAGAAACTGAAAACTTCAAG 1601
Query 1647 TGTATAGGTTTCTTCTCTCTTCCGCCTTCTTCGTTTTGTGATTGGATTCTGAGAAAGCCT 1706
|||||||||||||||| | ||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1602 TGTATAGGTTTCTTCTATATTCCGTCTTCTTCGTTTTCTGATTGGATTCTGAGAAAGCCT 1661
Query 1707 CATTGTCTCTGTCTTCTTTAAGCATTATCTTAAATTTGTGGTTTCCAATTTGAAGAGATG 1766
| |||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1662 CGTTGTCTTTGTTTTCTTGAAGCATTATCTTAAATTTGTGGTTTCCAATTTGAAGAGATG 1721
Query 1767 ATTCAAATCACATTTGAATCAAGAAAAGAAGGATCTTTCTCATTTAAGTCCAAGATCCTT 1826
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1722 ATTCAAATCACATTTGAATCAAGAAAAGAAGGATCTTTCTCATTTAAGTACAAGATCCTT 1781
Query 1827 ATATGAGATTTGTTCAAACT 1846
| ||| ||||| ||||||||
Sbjct 1782 AAATGTGATTTTTTCAAACT 1801
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69324245900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5