BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59020.1
Length=2691
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496030 jgi|Araly1|496030|fgenesh2_kg.8__1846__AT5G59020.1 3901 0.0
> Ahg496030 jgi|Araly1|496030|fgenesh2_kg.8__1846__AT5G59020.1
Length=2663
Score = 3901 bits (2112), Expect = 0.0
Identities = 2494/2676 (93%), Gaps = 36/2676 (1%)
Strand=Plus/Plus
Query 23 CTCTCTGTATCTTCGTCTTCTCCGTCGCCGAGTGGTTGTGTCGGTTCTGCATTTTCTCTT 82
|||| ||| |||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCTGTGTGTCTTCGTCTTCTTCATCGCCGAGTGGTTGTGTCGGTTCTGCATTTTCTCTT 60
Query 83 CGCTGTTTGAGAATCCAGGAAGTCATATAAGTTAGATTGATGTGAATCCATTGGTTCTGT 142
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
Sbjct 61 CGCTGTTTGAGAATCCAGGAAGTCATATAAGTTGGATTGATGTGAATCCAGTGGTTCTTT 120
Query 143 GACTAGC-TACTACTACAATCTATGGAAACTCCTGTGAAACAACGTCTCGAGAGTCATGA 201
||| ||| ||||||||||||||||||||||||| ||||||||| |||| | |||||||||
Sbjct 121 GACCAGCTTACTACTACAATCTATGGAAACTCCAGTGAAACAATGTCTGGGGAGTCATGA 180
Query 202 GCTTGTTAAGTATATGTCCAAGTTACCGGTTTTCTTGGAGAGAGCTGAAACTACACCTCA 261
|||||||||||||||||| ||| |||||||||||||||||||||||||||| || |||||
Sbjct 181 GCTTGTTAAGTATATGTCGAAGCTACCGGTTTTCTTGGAGAGAGCTGAAACCACGCCTCA 240
Query 262 GGAAAAGCTCTTGAGTGTTGGTGTTCTTGATTGGGGCCGTTTGGAGAAGTGGCAGCATAG 321
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 241 GGAAAAGCTCTTGAGTGTTGGTGTTCTTGATTGGGGTCGTTTGGAGGAGTGGCAGCATAG 300
Query 322 TCATAACAGGGTTTCAATGAAGAGTAGATTCCCTATGGTTTCCCA-AGCAGATGCTTTGT 380
||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||| |
Sbjct 301 TCATAACAGGGTTTCAATGAAGACTAGATTCCCTATGGTTTCCCATA-CAGATGCTTTTT 359
Query 381 TGGCTCCTCCGCCTAGAGGCGAGTCATCATCTGCTGGTCCAAGTAAAGTGCAGAACCGTA 440
|||||||||||||||||| |||| |||||||||||||| ||||||||||| || ||||
Sbjct 360 TGGCTCCTCCGCCTAGAGACGAG---TCATCTGCTGGTCCGAGTAAAGTGCACAATCGTA 416
Query 441 GTTCGGATCGTCGATTGAAACATCGTAGCTCACGGCAGTCCAGTGTGATGCCAAATTCTG 500
||| |||| ||||| |||||||||||||||||||||| |||||||| ||| || ||||||
Sbjct 417 GTTTGGATTGTCGAATGAAACATCGTAGCTCACGGCATTCCAGTGTAATGTCAGATTCTG 476
Query 501 -T--------TGTAAAGGAGTGTGAAGAAATCAAATGTACTCGGAGAAAGAAACACAAAG 551
| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 477 TTGAAGAAACTGTAAAGGAGTGTGATGAAATCAAATGTACTCGGAGAAAGAAACACAAAG 536
Query 552 ATCGTAGATGTTTCAGCGTACCAGAAGAGCAGTTTGGTCC-AAGTACTAATGCACAAGGA 610
||||||||||||||||| ||||||| |||||||||||||| || |||| |||||||||||
Sbjct 537 ATCGTAGATGTTTCAGCATACCAGATGAGCAGTTTGGTCCTAA-TACTGATGCACAAGGA 595
Query 611 TTAGATGTG-TGTGAGGAGAAGGATCTGAAAGGGAAGATTTGCTCTAAAAATGGAACTTT 669
||||||| | ||| | ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 596 TTAGATG-GATGTAAAGAGAAGGATCTGAAAGGGAAGATCTGCTCTAAAAATGGAACTTT 654
Query 670 GTCACATGGATTGAATCCTGAGGCTGGCTTGAACATGGAGGTAAAGTCAAAGGCTGAT-G 728
|||||| ||||||||||| ||||||||||||||| |||||||||| |||||||||||| |
Sbjct 655 GTCACAGGGATTGAATCCAGAGGCTGGCTTGAACGTGGAGGTAAAATCAAAGGCTGATAG 714
Query 729 TTAGCAGACATAGGAAGAGTGAAAAGAACTTGCACGAAAGAAACCGAAATGAACATGATG 788
|| ||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 715 -TAACAGACGTAGGAAGCGTGAAAAGAACTTGCACGAAAGAAACCGAAATGATCATGATG 773
Query 789 GAGAACTTGGTCGAAAGCAGCATGGGGAGGCTAAGACCTGCAAGAGGAGTTCAAATAGAA 848
|||||||| || |||||||||| |||||||||||||| |||||||||||||| |||||||
Sbjct 774 GAGAACTTAGTGGAAAGCAGCAGGGGGAGGCTAAGACTTGCAAGAGGAGTTCGAATAGAA 833
Query 849 AAGTCCGGGTTGTTCACGGTGTTGAAGGAGATTACTGTACTCAACATTCTTGT-CCCTTG 907
|||| ||||||||||| |||||||||||||||||||||||||||||||||| | ||||||
Sbjct 834 AAGTGCGGGTTGTTCATGGTGTTGAAGGAGATTACTGTACTCAACATTCTT-TCCCCTTG 892
Query 908 CCATGTAATGCTGATGGCTGCTTGGCAGAGAGTAAACTTGGCTCCACTGATGCTGACCAG 967
||||||||||||||||||||||||||| | |||||||| |||||||||||| ||||||||
Sbjct 893 CCATGTAATGCTGATGGCTGCTTGGCAAATAGTAAACTCGGCTCCACTGATACTGACCAG 952
Query 968 AAAAAGGTTTCAGTTGAACTATCTCAGTGCGTGTCACTCTTAACAAAAGCAAGGAATAAA 1027
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 953 AAAAAGGTTTCAGTTGAACTATCTCAGTGCGTGCCACTCTTAACAAAAGCAAGGAATACA 1012
Query 1028 TCTTCCAAAGGTAAAATCTCAGAAGACAGAGCATCATCTTTGTTATCTGTGAAACATTGT 1087
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 TCTTTCAAAGGTAAAATCACAGAAGACAGAGCATCATCTTTGTTATCTGTGAAACATTGT 1072
Query 1088 ATGTATGAGCCTTGCCAGAGACAAGATTCAAAGA-CGCATAAAGTGACATCTGAAAAGGG 1146
||| |||||||| ||||||||||| ||||||| | ||||||||| | |||||||||||||
Sbjct 1073 ATGAATGAGCCTGGCCAGAGACAAAATTCAAA-ATCGCATAAAGCGTCATCTGAAAAGGG 1131
Query 1147 GAGAAGTATATCTCCTTTTCAGCGGCTTAGCTTCAATATGGGTAAGGCAAGCAAAACTAA 1206
|||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1132 GAGAAGTATATCACCTTTTCAGCGGCCTAGCTTCAATATGGGTAAGGCCAGCAAAACTAA 1191
Query 1207 CAGTGAAGGAGGTACTGTTCCCACAACCCAGCTAGACTCAATGACTAACTCCACAAAGAT 1266
||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1192 CAGTGAAGGAGTTACTGTTCCCACAACCCAGCTAGACTCAATGGCTTACTCCACAAAGAT 1251
Query 1267 AGATTCACAAAATGTGGCTCTATTATCTGATGTTGACGGCTCAAATTGCAACAAACCCAG 1326
||||||||||||||||||||||||||||| |||||| |||||| | ||||||||||||||
Sbjct 1252 AGATTCACAAAATGTGGCTCTATTATCTGCTGTTGATGGCTCAGACTGCAACAAACCCAG 1311
Query 1327 TAAAAAAGATACAACCACGACAAGCCATTTAAGAAGGTTGCTAGAGCCTCTATTGAAGCC 1386
| ||||||||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 1312 TGAAAAAGATACAACCACGACAAGCCATTTAAGAAGGTTGCTAGAACCACTTTTGAAGCC 1371
Query 1387 AAGAGCAGCTAACTCTGGCAATT-CTGTGGAGGGGCCGAAAGGTCAAGGCCTTCAACGAC 1445
||||||| | |||||||| ||| ||||||||||||||| |||||||||| | ||| ||
Sbjct 1372 AAGAGCAAATCACTCTGGC-ATTCCTGTGGAGGGGCCGAGAGGTCAAGGCGTACAAAGAA 1430
Query 1446 TTAAATTGGGTATCACA-GGTTGCAAATCAGTAAATGTCAATGATTCAGCTCATGGA-AA 1503
| ||||||||||||| | ||||||||||||||||||||||||||||||||||| || ||
Sbjct 1431 TAAAATTGGGTATCA-AGGGTTGCAAATCAGTAAATGTCAATGATTCAGCTCA-CGAGAA 1488
Query 1504 GAAGCTAGGATCATCCATGGTTCGAGCTGTTCTGCGGGTTACAGTTAAGAACAATCAGCC 1563
||||||||||||||||||||| || |||||||||||||| || |||||||||||||||||
Sbjct 1489 GAAGCTAGGATCATCCATGGTCCGGGCTGTTCTGCGGGTAACCGTTAAGAACAATCAGCC 1548
Query 1564 ACTCTTTACATTTGCAGTGAACAAAGAAACAGACATTATTGCGGCCACCCAAAAGAAAAT 1623
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1549 ACTCTTTACATTTGCAGTGAACAAAGAAACCGACATCATTGCGGCCACCCAAAAGAAAAT 1608
Query 1624 GGGAAGCTCGGAAGAGGGTGAATGTACTAGTGTTTATACTTTCTTCTCTATTAAAGACCA 1683
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1609 GGGAAGCTCGGAAGAGGGTGAATGTACTAGTGTTTATACTTTGTTCTCCATTAAAGACCA 1668
Query 1684 TAAGAGAAACAGTGGGTGGTTAAACCAAAGAGGCAGCGGCCAAACACATGGTCTCATCTC 1743
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1669 TAAGAGAAATAGTGGGTGGTTAAACCAAAGAGGCAGAGGCCAAACACATGGTCTCATCTC 1728
Query 1744 TAATGTTGTTGCTCAGATGCGGGTCTCGAGCTCTTTGCCATCTGGTTCCATCAGAGAGTT 1803
||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1729 TAATGTTGTTGCTCAAATGCGGGTTTCAAGCTCTTTGCCATCTGGTTCCATCAGAGAGTT 1788
Query 1804 TGTTCTCTTCTCTGTAGAACTTGATCGAGAGAGCACGGAAAAGTCTGATCTGCAGTTGAA 1863
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1789 TGTTCTCTTCTCTGTAGAACTTGATCAAGAGAGCACGGAAAAGTCTGATCTGCAGTTGAA 1848
Query 1864 AAACGAGCTAGCTGCGATCATCGTGAAGATGCCAAGATTGTTTCACAGAAGGGC-TCCAC 1922
|||||||||||||||||||||||||||||||||||||| ||||||||| ||||| || ||
Sbjct 1849 AAACGAGCTAGCTGCGATCATCGTGAAGATGCCAAGATGGTTTCACAGGAGGGCATC-AC 1907
Query 1923 TAAACACGGTTCAGGATCACAATGCAACTAGTGGAGAGCTTGAAGATCACATCAAAGACA 1982
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1908 TAAACACGGTTCAGGATCACAATGCACCCAGTGGAGAGCTTGAAGATCACATCAAAGACA 1967
Query 1983 AGTTTTTTGACCAAGACATTAGTGCTACGGTCATACTTCAAAGCGGTGTTCATAGTATGC 2042
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1968 GGTTTTTTGACCAAGACATTAGTGCTACTGTCATACTTCAAAGCGGTGTTCATAGTATGC 2027
Query 2043 CTCAGAAAGGAGGGCCATCGTCTTTGATACAGCGATGGAGAACAGGTGGATCTTGCGATT 2102
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2028 CTCAGAAAGGAGGGCCATCGTCTTTGATCCAGCGATGGAGAACAGGTGGATCTTGCGATT 2087
Query 2103 GTGGAGGTTGGGACATGGGCTGTAATCTCAGAATTCTTACAAATCAGCACAACCTCTCCT 2162
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2088 GTGGAGGTTGGGACATGGGCTGTAATCTCAGGATTCTTACAAATCAGCACAACCTCTCCT 2147
Query 2163 ACAAGAAGTCGGCAACATCAAACTCACCACCCTCTTCAAACAGATTCGAACTCTTCTTTC 2222
||||||| || |||| |||||||||||||||||||||||| |||| || || |||||||
Sbjct 2148 ACAAGAACTCTACAACTTCAAACTCACCACCCTCTTCAAACCGATTTGAGCTTTTCTTTC 2207
Query 2223 TGGGAGAACAAGCGGAGGAGCATCCGTTCTTGAGCTTTAAACCGATCAAAGAAGGGATAT 2282
|||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2208 TGGGAGAACACCCCGAGGAACATCCGTTCTTGAGCTTTAAACCGATCAAAGAAGGGATAT 2267
Query 2283 ATTCAGTTGCATATAATTCATCCCTTTCACAACTACAAGCGTTCTCTATATGCATGGCAC 2342
||||||| | ||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 2268 ATTCAGTGGTGTATAATTCATCCCTTTCACAACTACAAGCCTTCTCCATATGTATGGCAC 2327
Query 2343 TTGCAGAGAGTAGGAAAATGTCAGAGAACATCCTTGAGCAGAAAAGCTCTTGTGATGAAC 2402
||||||||||||| ||||||||||||| || ||||||||| |||||||||| ||||||||
Sbjct 2328 TTGCAGAGAGTAGCAAAATGTCAGAGATCACCCTTGAGCACAAAAGCTCTTCTGATGAAC 2387
Query 2403 ATAAAGTTAGGGGAAAAACCGTGTTACTCCCGGACCAAGATTCAAACCCTAATGGCAACA 2462
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2388 ATAAAGCTAGGGGAAAAACCGTGTTAGTCCCGGACCAAGATTCAAACCCTAATGGCAACA 2447
Query 2463 CCGTCGGGTATCAACCGCGGTTCTCGCCTGTTGGGCGGGTCTGAAGTTTGTATTTTTACT 2522
|||||||||||||||||| | |||||||||| ||||||||||||||||| ||||||||||
Sbjct 2448 CCGTCGGGTATCAACCGCCGCTCTCGCCTGTCGGGCGGGTCTGAAGTTTATATTTTTACT 2507
Query 2523 TCAAACCCAAATTTTTTACTTGCAGGTATGTGATCATAATATTAGTGTTAAGCCTAAGAT 2582
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 2508 TCAAACCCAAATTTTTTACTTGCAGGTATGTGGTCATATTATTAGTGTTAAGCCTAAGAG 2567
Query 2583 A-AAA--CAGTTGCAGGAAATAAGAAAGCAGCTAGAAGATCTCTTTAAAGTAGTTAGTCT 2639
| ||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 2568 AGAAAAACAGTTGCAGGAAATAAGAAAGTAGCTAGAAGATATCTTTAAAGTAGTTAGTCT 2627
Query 2640 AATGATCTTCCCAACTCTTAAGTGTGAATAtttttt 2675
||||||||||||||||||||||||||||||||||||
Sbjct 2628 AATGATCTTCCCAACTCTTAAGTGTGAATATTTTTT 2663
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101510502925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5