BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59040.1
Length=574
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496052 jgi|Araly1|496052|fgenesh2_kg.8__1868__AT5G59040.1 830 0.0
> Ahg496052 jgi|Araly1|496052|fgenesh2_kg.8__1868__AT5G59040.1
Length=557
Score = 830 bits (449), Expect = 0.0
Identities = 524/560 (94%), Gaps = 5/560 (1%)
Strand=Plus/Plus
Query 1 AAAATCTTCACATTGCACGTAAAAAATATCTTTATACAATGAACGGCATGAGTGGATCTT 60
||||||||||||| |||||| || ||||||| || ||||||||||||||||| |||||||
Sbjct 1 AAAATCTTCACATAGCACGTTAAGAATATCTCTAAACAATGAACGGCATGAGCGGATCTT 60
Query 61 CTCCGGCGGCTCCGGCTCCTTCACCATCATCGTTCTTCCAACATCGCCACCGTCACGGTG 120
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 CTCCGGCGGCTCCGGCACCTTCACCATCATCGTTCTTCCAACATCGCCGCCGTCACGGTG 120
Query 121 GTATGATGCATATGACTTTCTTTTGGGGAAAAACCACGGAGGTTCTATTCGACGGATGGC 180
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 121 GCATGATGCATATGACTTTCTTTTGGGGAAAAAACACGGAGGTTCTATTCGACGGCTGGC 180
Query 181 CAGGGACCAGTCTGAAAATGTATTGGGTCTGTCTCGCCGTCATTTTTGTTATTTCCGCTT 240
||||||||||||||||||||||||||| ||||||||||| ||| |||| | ||||||||
Sbjct 181 CAGGGACCAGTCTGAAAATGTATTGGGCCTGTCTCGCCGCCATCTTTGCTCTTTCCGCTG 240
Query 241 TCTCCGAGTGTCTATCGCGGTGCGGTTTCATGAAATCCGGTCCGGCTAGC-TTGGGAGGC 299
|||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 241 TCTCGGAGTGGCTATCGCGGTGCGGTTTCATGAAATCCGGTCCGGCTAGCTTTGGG-GGC 299
Query 300 GGGCTA-TTACAGACTGCGGTTTACACCGTGAGGGCTGCTTTGTCTTATTTGGTCATGCT 358
|||||| || |||||| |||||||||||||||||||| ||||||||||||||||||| |
Sbjct 300 GGGCTAGTT-CAGACTTTGGTTTACACCGTGAGGGCTGGTTTGTCTTATTTGGTCATGTT 358
Query 359 GGCTGTGATGTCGTTCAATGGAGGAGTCTTCGTGGCTGCGATGGCTGGTTTTGGATTAGG 418
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 359 GGCTGTGATGTCGTTCAATGGAGGAGTCTTCTTGGCTGCAATGGCTGGTTTTGGATTAGG 418
Query 419 GTTTATGATTTTTGGAAGTAGGGCTTTTAGGGCCACTAGCAGTAACAGTCACACCGAGGT 478
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 419 GTTTATGATTTTTGGAAGTAGGGCTTTTAGGAACACTAGCAGTAACAGTCACACCGAGGT 478
Query 479 TCAATCACATTGTTGATTTTTGTCTTAGATCGTTTTTATTTTCCTTGTTTCCCGTTGAAA 538
|||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||
Sbjct 479 TCAATCACATTGTTGATTTTTGTCTT-GATCCTTTTTATTTTTCTTGTTTCCCGTTGAAA 537
Query 539 TAATGATTAGGAAAATaaaa 558
|||||||| ||||||||||
Sbjct 538 TAATGATTTCGAAAATAAAA 557
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20985573950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5