BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59070.1
Length=1621
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950662 jgi|Araly1|950662|scaffold_802549.1 2431 0.0
> Ahg950662 jgi|Araly1|950662|scaffold_802549.1
Length=1570
Score = 2431 bits (1316), Expect = 0.0
Identities = 1487/1571 (95%), Gaps = 5/1571 (0%)
Strand=Plus/Plus
Query 20 GATTCGATCTATCACTTCCCATGGCTAGAGAAAACCCATTGATGAGCTTCTCCTTTAGTT 79
||||||||||||||||| |||||||||||||||||| ||||||||||||||| || ||||
Sbjct 1 GATTCGATCTATCACTTTCCATGGCTAGAGAAAACCAATTGATGAGCTTCTCATTCAGTT 60
Query 80 TCAGATAtctctgtcactttgctctactcctctctctcctctcctttgtctcttttctct 139
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 61 TCAGATATCTCTGTCACTTTGCTCTACTCCTCTCTCTCCTCTCATTCGTCTCTTTTCTCT 120
Query 140 tCAGACACAACACATCACTCTGTTCTTGTCTTTACGATCACAACACCTACGTTAACACAT 199
|||||||||||||||||||||||||||| ||||||||||||||| || | | ||||||||
Sbjct 121 TCAGACACAACACATCACTCTGTTCTTGCCTTTACGATCACAACCCCAAAGCTAACACAT 180
Query 200 TCGATCA-T--CAGCAAAACAATGAAACCATCGATCTTCTTCGATTCTCTTCTGCTTGGA 256
||||||| | || || |||||||||||||| ||||||||| |||| |||||||||||||
Sbjct 181 TCGATCACTACCACCATAACAATGAAACCATTGATCTTCTTAGATTTTCTTCTGCTTGGA 240
Query 257 ACCATCTCACTTTCCCTTCTAAACCCAAGAAGACTCTCAAGATCGCTGTGGTGGTCAAGA 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACCATCTCACTTTCCCTTCTAAACCCAAGAAGACTCTCAAGATCGCTGTGGTGGTCAAGA 300
Query 317 AATGGCCGAGGAAATCGCAAGCTGGTGGGCTCGAGCGACACGCGCTTACATTGCATCTCG 376
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 301 AATGGCCGAGGAAATCGCAAGCTGGTGGGCTCGAGCGACACGCGCTTACTTTGCACCTTG 360
Query 377 CTCTAGCCAATCGTGGCCACGAGCTTCATGTTTTCACCGCTGCTTCTCCATCGTTCCCTG 436
||||||| ||||| ||||| ||| ||||||||||||| ||||||||||| ||||||||||
Sbjct 361 CTCTAGCTAATCGCGGCCATGAGGTTCATGTTTTCACAGCTGCTTCTCCGTCGTTCCCTG 420
Query 437 AATATCAACTGAAAAATCTGA-TGTTCCATCTCTCTGAGCCAACCGCTGCTGGATATCTT 495
| ||||| ||||||||||| | ||||||||||||| |||||||||||||||| ||||||
Sbjct 421 AGTATCAGCTGAAAAATCT-ACTGTTCCATCTCTCCGAGCCAACCGCTGCTGAATATCTC 479
Query 496 GATCAAGCTTCTGTCTCGCAACAGCTTCAGACGCAGAACGCTAGTGGAAGACCGTTTGAC 555
||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||
Sbjct 480 GATCAAGCTTCTGTCTCGCTACAGCTTCAGACGCAGAACGCAAGTGGAAGACCATTTGAC 539
Query 556 GTAATTCACACAGAGAGCGTTGGGCTTCTCCACACAAGAGCCAAGAATCTCCGTAACGTG 615
|| ||||||||||||||||| || ||||||||||||||||| ||||| ||||||||||||
Sbjct 540 GTGATTCACACAGAGAGCGTCGGACTTCTCCACACAAGAGCTAAGAACCTCCGTAACGTG 599
Query 616 GTCGCGTCTTGGCATGGAATCGCTTACGAAACTTTTCACTCTGACATCATCCAAGAACTC 675
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 600 GTCGCGTCTTGGCATGGAATCGCTTACGAAACTTTTCACTCCGACATCATCCAAGAACTC 659
Query 676 CTTCGTCAAGCAGACATCGCCGCCGCCACCGCTGCTGGAACCGAAGAAGAACAGCCACCG 735
|| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||
Sbjct 660 CTCCGTCAAGCAGACATCGCCGCCACCACCGCAGCTGGAACCGAAGAAGAACAGTCACCG 719
Query 736 CCTTCATCGCCAGCTCTGACGGAGCGAGCGAAGCGAGTCGTCGAGGAAGTCAAATTCTTC 795
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 720 CCTTCATCTCCAGCTCTGACGGAGCGAGCGAAGAGAGTCGTCGAGGAAGTCAAATTCTTC 779
Query 796 CAACGTTACGCTCACCACGTGGCAACTAGCGATCACTGCGGTGACGTACTCAAGAGGATT 855
||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 780 CAACGCTACGCTCACCACGTGGCAACTAGCGATCATTGTGGTGACGTACTCAAGAGGATT 839
Query 856 TACATGATTCCGGAGGAACGTGTCCATATCATTCTAAACGGCGTCGACGAGAACGTTTTC 915
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 840 TACATGATTCCGGAGGAACGTGTCCACATCATTCTAAACGGCGTCGACGAGAACGTTTTC 899
Query 916 AAACCGGACGTTTCAAAACGTGAGAGCTTTAGAGAGAAATTTGGCGTTAGAAGCGGCAAG 975
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 900 AAACCGGACGTTTCAAAACGTGAGAGCTTCAGAGAGAAATATGGCGTTAGAAGCGGCAAG 959
Query 976 AACAAGAAATCTCCTCTGGTTTTGGGAATTGCAGGGAGGTTAGTGAGAGATAAAGGTCAT 1035
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 AACAAGAAACCTCCTCTGGTTTTGGGAATTGCAGGGAGGTTAGTGAGAGATAAAGGTCAT 1019
Query 1036 CCTTTGATGTTCTCAGCTTTGAAGCGAGTGTTTGAAGAAAACAAGGAGGCACGTGAAAAC 1095
|||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1020 CCTTTGATGTTCGCAGCTTTGAAACGAGTGTTTGAAGAAAGCAAGGAGGCACGTGAAAAC 1079
Query 1096 GTTGTCGTTTTGGTAGCTGGAGATGGTCCATGGGGAAACAGATATAAAGACCTCGGGTCT 1155
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1080 GTTGTCGTTTTAGTAGCTGGAGATGGTCCATGGGGAAACAGATATAGAGACCTCGGGTCT 1139
Query 1156 ACTAATGTGATTGTTCTTGGACCGTTGGATCAAGAAAAGCTAGCGGGATTCTACAACGCG 1215
| |||||| |||||||||||||| ||||||||||||| |||||||| |||||||||||||
Sbjct 1140 AATAATGTAATTGTTCTTGGACCATTGGATCAAGAAAGGCTAGCGGAATTCTACAACGCG 1199
Query 1216 ATCGATGTGTTTGTGAATCCGACCCTTCGAGCTCAAGGGCTGGATCACACTCTCTTGGAA 1275
||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 1200 ATCGATGTGTTTGTGAATCCGACTCTTCGAGCTCAAGGGCTCGATCACACTCTTTTGGAA 1259
Query 1276 GCCATGGTTTCAGGAAAACCGGTCTTAGCTACTAGGCTAGCGAGTATCACTGGGTCAGTG 1335
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 GCCATGGTTTCAGGCAAACCGGTCTTAGCTACTAGGCTAGCGAGTATCACTGGGTCAGTA 1319
Query 1336 GTTGTCGGTCCACATTTGGGATATACTTTCTCACCAAATGTTGAGTCTCTTACCGAGGCG 1395
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1320 GTTGTCGGTCCACATTTGGGATATACTTTCTCACCAAATGTTGAGTCTCTTAGCGAGGCG 1379
Query 1396 ATTTTGCGGGTTGTTAGCGATGGAACAGAGGAATTACAGAGGAAAGGCAAGGAAGCGCGT 1455
|||| |||||||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 1380 ATTTCACGGGTTGTTAGCGATGGAACTGAGGAATTGCAAAGGAAAGGCAAGGAAGCGCGT 1439
Query 1456 GAACGGTCGTTGAGGCTTTTCACGGCGACTAAAATGGCTGATTCATATGAAAGGTTTTTT 1515
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 GAACGGTCATTGAGGCTTTTCACGGCGACTAAAATGGCTGATTCATATGAAAGGTTTTTT 1499
Query 1516 CTTTGCATTTCGGATCAGAGGTTTTGTACGTTACAAGCTTAAAACATTTGAGCTATAACA 1575
|||||||||||||||||||| ||||||||||||||||||| |||||| ||||| |||||
Sbjct 1500 CTTTGCATTTCGGATCAGAGCTTTTGTACGTTACAAGCTTCAAACATATGAGCGATAACG 1559
Query 1576 CTAATATAGTT 1586
|||||||||||
Sbjct 1560 CTAATATAGTT 1570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60753940775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5