BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59080.1
Length=848
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496048 jgi|Araly1|496048|fgenesh2_kg.8__1864__AT5G59080.1 1279 0.0
> Ahg496048 jgi|Araly1|496048|fgenesh2_kg.8__1864__AT5G59080.1
Length=790
Score = 1279 bits (692), Expect = 0.0
Identities = 760/793 (96%), Gaps = 4/793 (1%)
Strand=Plus/Plus
Query 14 CATCCCTTTTAGCAATATGTATATATAGCCCCATTGAAATCTTATTGTCATTACAAACAA 73
|||||||||||||| |||||||| ||| ||||||||| ||||||||||||||||||||||
Sbjct 1 CATCCCTTTTAGCATTATGTATAAATACCCCCATTGAGATCTTATTGTCATTACAAACAA 60
Query 74 CTTACAGAACTATTCTAACTCTCTTACGGAAGAAGAATCAAAGAGAATCAGATTAGAGTG 133
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCTACAGAACTATTCTAAGTCTCTTACGGAAGAAGAATCAAAGAGAATCAGATTAGAGTG 120
Query 134 TGAGTTTTTAGAAGTTACTAAATGGAGGGTAAAGGACGAGTTGGCTCAtcttcttctact 193
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGAGTTTTT-GAAGTTACTAAATGGAGGGTAAAGGACGAGTTGGCTCATCTTCTTCTACT 179
Query 194 tcttcttcttTTACAGCCGAACTCTTCGGTTCCAAAGATCCTTCGCCACCATCTTCATCC 253
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 180 TCTTCTTCTTTCACAGCCGAACTCTTCGGTTCTAAAGATCCTTCGCCACCATCTTCATCC 239
Query 254 TCCGGCATCTTCTCCACCATGTTCCCTCATCCCTCCAAGGGTTCTGCAAGAGATGGTTCA 313
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 240 TCCGGCATCTTCTCCACCATTTTCCCTCATCCCTCCAAGGGTTCTGGAAGAGATGGTTCA 299
Query 314 AACTCCAAACATGGCTCACAAGCTCAACGTAGAGAATCTTTAAATGCTCAAGAAGACAGA 373
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 300 AACTCCAAACATGGCTCACAAGCTCAACGTAGAGAATCTTTAAATGCGCAAGAAGACAGA 359
Query 374 GTTGAGCCATGTCATCTAAGCTCTTCTCTTTACTACGGTGGTCAAGACGTATACGCTCGA 433
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 360 GTTGAGCCATGTCATCTTAGCTCTTCTCTTTACTACGGTGGTCAAGACGTATACTCTCGA 419
Query 434 TCCACCACCAACCAAACTTACCCTCCAGTTAAAAATGACCGTAGAAGAAGCGGAGAAGAC 493
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 420 TCCACCACCAACCAAACTTACCCTGCAGTTAAAAATGAGCGTAGAAGAAGCGGAGAAGAC 479
Query 494 GACGCTAATGGACAGAACCCGCAAGATGTTTCAAGAGGAAACTGGTGGCAAGGTTCTCTT 553
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GATGCTAATGGACAGAACTCGCAAGATGTTTCAAGAGGAAACTGGTGGCAAGGTTCTCTT 539
Query 554 TATTACTAAAGAACCACTTCCTTTAGTTTCTTTGTAAATCTCTCCAGGAACACC-TGAAG 612
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 540 TATTACTAAAGAACCACTTCCTTTAGTTTCTTTGTAAATCTCTCCAGGAAC-CCATGAAG 598
Query 613 CTCAAGCCAAGTACTAATATCTACTTAACCAAGACTTTGTATAAATAAGTTTATGCAGaa 672
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 599 CTCAAGCCAAGTACTAATATCTACTTAACCAAGACTTTGTATAAATAAGTTTATGCAGGA 658
Query 673 aaaaaaaGTTATTAGGAGATTTCTAGGTTAAGTAATAATATCGAAGAATTCTCCTAGTAG 732
|||||| |||||||||||||||| || ||||||||||||||| ||||| ||||||||||
Sbjct 659 AAAAAA-GTTATTAGGAGATTTCAAGATTAAGTAATAATATCAAAGAAATCTCCTAGTAA 717
Query 733 TAGTGTCTTAAATAGATTTCTCTAGTACTTGTTATAATCAACTGTAACAATATTTACTCT 792
|| ||||| |||||||||| ||||||||||||||||| |||||||| |||||||||||||
Sbjct 718 TAATGTCTCAAATAGATTTGTCTAGTACTTGTTATAAGCAACTGTATCAATATTTACTCT 777
Query 793 GTTTTTCTCTGTC 805
| |||||||||||
Sbjct 778 GCTTTTCTCTGTC 790
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31375160691
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5