BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59140.1
Length=640
Score E
Sequences producing significant alignments: (Bits) Value
Ahg952252 jgi|Araly1|952252|scaffold_4800008.1 529 1e-149
Ahg950652 jgi|Araly1|950652|scaffold_802539.1 529 1e-149
> Ahg952252 jgi|Araly1|952252|scaffold_4800008.1
Length=331
Score = 529 bits (286), Expect = 1e-149
Identities = 314/327 (96%), Gaps = 3/327 (1%)
Strand=Plus/Plus
Query 52 GACGACGACGAAGATGAGAGAGACGGTGAAGTTGATAAGCATGGAAGGTTTCGAGTTCGT 111
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 8 GACGACGACGAAGATGAGAGAGACGGTGAAGTTAATAAGCATGGAAGGATTCGAGTTCGT 67
Query 112 CATCGACAGAGAAGCCGCTATGGTTTCTCAGACTATCCGAAGCATGCTCACTTCTCCAGG 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 68 CATCGACAGAGAAGCCGCTATGGTTTCTCAGACTATCCGAAGCATGCTCACTTCTCCAGG 127
Query 172 TGGTTTCTCGGAATCGAAAGATGGCGTAGTGACTTTCCCTGATATAAGCACCACAATACT 231
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 128 TGGTTTCTCGGAATCGAAAGATGGCGTAGTGACTTTCCCTGATATCAGCACCACAATACT 187
Query 232 AGAGAAGATTTGCCAGTACTTCTACTGGTCTCTTCAATACTCCAGAGGCAAAGAGACAGA 291
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 188 AGAGAAGATCTGCCAGTACTTCTACTGGTCTCTTCAGTACTCCAGAGGCAAAGAGACTGA 247
Query 292 GTTTCATATTGAGCCTGAACTGACTCTAGAGCTGATGATGGCTGCTAACTATCTTCACAC 351
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 248 GTTTCACATTGAGCCTGAACTGACTCTAGAGCTGATGATGGCTGCTAACTACCTTCACAC 307
Query 352 TTGAAGAATGAAAAGGATAACGCTGTT 378
||||| | ||| |||||||||||||
Sbjct 308 TTGAACCA--AAA-GGATAACGCTGTT 331
> Ahg950652 jgi|Araly1|950652|scaffold_802539.1
Length=331
Score = 529 bits (286), Expect = 1e-149
Identities = 314/327 (96%), Gaps = 3/327 (1%)
Strand=Plus/Plus
Query 52 GACGACGACGAAGATGAGAGAGACGGTGAAGTTGATAAGCATGGAAGGTTTCGAGTTCGT 111
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 8 GACGACGACGAAGATGAGAGAGACGGTGAAGTTAATAAGCATGGAAGGATTCGAGTTCGT 67
Query 112 CATCGACAGAGAAGCCGCTATGGTTTCTCAGACTATCCGAAGCATGCTCACTTCTCCAGG 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 68 CATCGACAGAGAAGCCGCTATGGTTTCTCAGACTATCCGAAGCATGCTCACTTCTCCAGG 127
Query 172 TGGTTTCTCGGAATCGAAAGATGGCGTAGTGACTTTCCCTGATATAAGCACCACAATACT 231
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 128 TGGTTTCTCGGAATCGAAAGATGGCGTAGTGACTTTCCCTGATATCAGCACCACAATACT 187
Query 232 AGAGAAGATTTGCCAGTACTTCTACTGGTCTCTTCAATACTCCAGAGGCAAAGAGACAGA 291
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 188 AGAGAAGATCTGCCAGTACTTCTACTGGTCTCTTCAGTACTCCAGAGGCAAAGAGACTGA 247
Query 292 GTTTCATATTGAGCCTGAACTGACTCTAGAGCTGATGATGGCTGCTAACTATCTTCACAC 351
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 248 GTTTCACATTGAGCCTGAACTGACTCTAGAGCTGATGATGGCTGCTAACTACCTTCACAC 307
Query 352 TTGAAGAATGAAAAGGATAACGCTGTT 378
||||| | ||| |||||||||||||
Sbjct 308 TTGAACCA--AAA-GGATAACGCTGTT 331
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23445593955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5