BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G59150.1 Length=1020 Score E Sequences producing significant alignments: (Bits) Value Ahg950651 jgi|Araly1|950651|scaffold_802538.1 1123 0.0 Ahg887873 jgi|Araly1|887873|Al_scaffold_0048_6 776 0.0 Ahg485055 jgi|Araly1|485055|fgenesh2_kg.5__1047__AT3G46830.1 758 0.0 > Ahg950651 jgi|Araly1|950651|scaffold_802538.1 Length=694 Score = 1123 bits (608), Expect = 0.0 Identities = 665/693 (96%), Gaps = 2/693 (0%) Strand=Plus/Plus Query 162 GGTGAGATCAAAGAGGAAAAATGGCGCATAGGGTAGAACAGGATTATGATTATTTGTTCA 221 |||||||||||||||||||||||||||||||||| |||||||||||||||||||| || | Sbjct 1 GGTGAGATCAAAGAGGAAAAATGGCGCATAGGGTTGAACAGGATTATGATTATTTATTTA 60 Query 222 AGATCGTGTTGATTGGTGATTCTGGTGTCGGGAAAACAAACATCTTGTCTAGATTCACAA 281 |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| Sbjct 61 AGATCGTGTTGATTGGTGATTCTGGTGTTGGGAAATCAAACATCTTGTCTAGATTCACAA 120 Query 282 GGAATGAGTTTTGTTTGGAATCTAAGTCCACTATTGGTGTTGAATTCGCCACCAGAACTC 341 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GGAATGAGTTTTGTTTGGAATCTAAGTCCACTATTGGTGTTGAATTCGCCACCAGAACTC 180 Query 342 TTCAGGTTGAAGGAAAGACTGTTAAGGCCCAGATATGGGACACTGCAGGTCAAGAGCGGT 401 ||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||| Sbjct 181 TTCAGGTTGAAGGAAAGACTGTTAAAGCCCAGATCTGGGACACTGCAGGGCAAGAGCGGT 240 Query 402 ACAGAGCTATCACAAGTGCTTATTACAGAGGAGCGGTAGGTGCACTTCTTGTCTATGACA 461 |||||||||||||||| ||||| |||||||| ||||||||||| |||||||||||||||| Sbjct 241 ACAGAGCTATCACAAGCGCTTACTACAGAGGCGCGGTAGGTGCGCTTCTTGTCTATGACA 300 Query 462 TCACTAAAAGACAAACCTTTGACAATGTTCTGA-GGTGGCTACGTGAACTAAGAGACCAT 520 | || ||||||||||||||||||||||| || | |||||||||||||||||||||||||| Sbjct 301 TTACCAAAAGACAAACCTTTGACAATGT-CTTAAGGTGGCTACGTGAACTAAGAGACCAT 359 Query 521 GCGGATTCCAACATTGTGATCATGATGGCTGGGAACAAAGCTGATCTAAACCACTTGAGA 580 || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 GCAGATTCCAACATAGTGATCATGATGGCTGGGAACAAAGCTGATCTAAACCACTTGAGA 419 Query 581 TCAGTTGCGGAGGAAGATGGACAGACTCTAGCTGAGACAGAAGGTCTCTCTTTCTTGGAG 640 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 TCAGTTGCTGAGGAAGATGGACAGACTCTAGCTGAGACAGAAGGTCTCTCTTTCTTGGAG 479 Query 641 ACATCAGCTCTTGAAGCCACCAATGTGGAGAAAGCATTTCAAACCGTGTTAGCAGAGATT 700 ||||| |||||||||||||||||||| || |||||||||||||| ||||||||||||||| Sbjct 480 ACATCTGCTCTTGAAGCCACCAATGTTGAAAAAGCATTTCAAACTGTGTTAGCAGAGATT 539 Query 701 TACCACATCATCAGCAAAAAAGCTTTGGCTGCTCAAGAAGCAGCGGCTGCTAATTCTGCC 760 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 540 TACCACATCATCAGCAAAAAAGCTTTGGCTGCTCAAGAAGCAGCGGCTGCTAATTCCGCG 599 Query 761 ATTCCGGGGCAAGGAACAACGATTAACGTTGAAGACACATCTGGAGCTGGCAAAAGAGGT 820 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 600 ATTCCGGGGCAAGGAACAACGATTAACGTTGGTGACACATCTGGAGCTGGCAAAAGAGGT 659 Query 821 TGCTGCTCTACTTAATTGAAAGTTTAAACTTTC 853 ||||||||||||||||||||||||||||||||| Sbjct 660 TGCTGCTCTACTTAATTGAAAGTTTAAACTTTC 692 > Ahg887873 jgi|Araly1|887873|Al_scaffold_0048_6 Length=504 Score = 776 bits (420), Expect = 0.0 Identities = 467/490 (95%), Gaps = 2/490 (0%) Strand=Plus/Plus Query 347 GTTGAAGGAAAGACTGTTAAGGCCCAGATATGGGACACTGCAGGTCAAGAGCGGTACAGA 406 |||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||| Sbjct 16 GTTGAAGGAAAGACTGTTAAAGCCCAGATCTGGGACACTGCAGGGCAAGAGCGGTACAGA 75 Query 407 GCTATCACAAGTGCTTATTACAGAGGAGCGGTAGGTGCACTTCTTGTCTATGACATCACT 466 ||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||| || Sbjct 76 GCTATCACAAGCGCTTACTACAGAGGCGCGGTAGGTGCGCTTCTTGTCTATGACATTACC 135 Query 467 AAAAGACAAACCTTTGACAATGTTC-TGAGGTGGCTACGTGAACTAAGAGACCATGCGGA 525 |||||||||||||||||||||| || | ||||||||||||||||||||||||||||| || Sbjct 136 AAAAGACAAACCTTTGACAATG-TCTTAAGGTGGCTACGTGAACTAAGAGACCATGCAGA 194 Query 526 TTCCAACATTGTGATCATGATGGCTGGGAACAAAGCTGATCTAAACCACTTGAGATCAGT 585 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 195 TTCCAACATAGTGATCATGATGGCTGGGAACAAAGCTGATCTAAACCACTTGAGATCAGT 254 Query 586 TGCGGAGGAAGATGGACAGACTCTAGCTGAGACAGAAGGTCTCTCTTTCTTGGAGACATC 645 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 255 TGCTGAGGAAGATGGACAGACTCTAGCTGAGACAGAAGGTCTCTCTTTCTTGGAGACATC 314 Query 646 AGCTCTTGAAGCCACCAATGTGGAGAAAGCATTTCAAACCGTGTTAGCAGAGATTTACCA 705 |||||||||||||||||||| || |||||||||||||| |||||||||||||||||||| Sbjct 315 TGCTCTTGAAGCCACCAATGTTGAAAAAGCATTTCAAACTGTGTTAGCAGAGATTTACCA 374 Query 706 CATCATCAGCAAAAAAGCTTTGGCTGCTCAAGAAGCAGCGGCTGCTAATTCTGCCATTCC 765 ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 375 CATCATCAGCAAAAAAGCTTTGGCTGCTCAAGAAGCAGCGGCTGCTAATTCCGCGATTCC 434 Query 766 GGGGCAAGGAACAACGATTAACGTTGAAGACACATCTGGAGCTGGCAAAAGAGGTTGCTG 825 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 435 GGGGCAAGGAACAACGATTAACGTTGGTGACACATCTGGAGCTGGCAAAAGAGGTTGCTG 494 Query 826 CTCTACTTAA 835 |||||||||| Sbjct 495 CTCTACTTAA 504 > Ahg485055 jgi|Araly1|485055|fgenesh2_kg.5__1047__AT3G46830.1 Length=1193 Score = 758 bits (410), Expect = 0.0 Identities = 581/664 (88%), Gaps = 10/664 (2%) Strand=Plus/Plus Query 177 GAAAAATGGCGCATAGGGTAGAACAGGATTATGATTATTTGTTCAAGATCGTGTTGATTG 236 |||||||| ||||||| ||||| || || |||||||||||||| ||||| |||||||||| Sbjct 222 GAAAAATGACGCATAGAGTAGATCAAGAATATGATTATTTGTTTAAGATTGTGTTGATTG 281 Query 237 GTGATTCTGGTGTCGGGAAAACAAACATCTTGTCTAGATTCACAAGGAATGAGTTTTGTT 296 ||||||||||||| |||||| | || |||||||| |||||||| |||||||||||||| | Sbjct 282 GTGATTCTGGTGTTGGGAAATCGAATATCTTGTCGAGATTCACCAGGAATGAGTTTTGCT 341 Query 297 TGGAATCTAAGTCCACTATTGGTGTTGAATTCGCCACCAGAACT-CTTCAGGTTGAAGGA 355 |||| ||||| ||||||||||||||||||||||| ||||||||| | ||||||||||||| Sbjct 342 TGGAGTCTAAATCCACTATTGGTGTTGAATTCGCTACCAGAACTAC-TCAGGTTGAAGGA 400 Query 356 AAGACTGTTAAGGCCCAGATATGGGACACTGCAGGTCAAGAGCGGTACAGAGCTATCACA 415 ||||| ||||||||||||| ||||||||||||||||| ||||||||||| || ||||| Sbjct 401 AAGACAATTAAGGCCCAGATCTGGGACACTGCAGGTCAGGAGCGGTACAGGGCAATCACC 460 Query 416 AGTGCTTATTACAGAGGAGCGGTAGGTGCACTTCTTGTCTATGACATCACTAAAAGACAA 475 ||||||||||||||||| || || ||||||||||||||||||||||| || || ||||| Sbjct 461 AGTGCTTATTACAGAGGCGCAGTGGGTGCACTTCTTGTCTATGACATTACCAAGAGACAG 520 Query 476 ACCTTTGACAATGTTCTGAGGTGGCTACGTGAACTAAGAGACCATGCGGATTCCAACATT 535 || |||||||||||| | |||||||| |||||||| ||||||||||| |||||||||||| Sbjct 521 ACTTTTGACAATGTTTTAAGGTGGCTGCGTGAACTGAGAGACCATGCAGATTCCAACATT 580 Query 536 GTGATCATGATGGCTGGGAACAAAGCTGATCTAAACCACTTGAGATCAGTTGCGGAGGAA 595 |||||||||||||||||||||||| | ||||| |||||||||||||| ||||| |||||| Sbjct 581 GTGATCATGATGGCTGGGAACAAATCCGATCTGAACCACTTGAGATCCGTTGCTGAGGAA 640 Query 596 GATGGACAGACTCTAGCTGAGACAG-AAGGTCTCTCTTTCTTGGAGACATCAGCTCTTGA 654 ||||| |||| | | ||||||| || |||||||||||||| ||||||||||||||||||| Sbjct 641 GATGGTCAGAGTTTGGCTGAGA-AGGAAGGTCTCTCTTTCCTGGAGACATCAGCTCTTGA 699 Query 655 AGCCACCAATGTGGAGAAAGCATTTCAAACCGTGTTAGCAGAGATTTACCACATCATCAG 714 ||| || || || |||||||| ||||| ||| | |||| |||||| ||||| ||||| || Sbjct 700 AGCAACAAACGTTGAGAAAGCGTTTCAGACCATCTTAGGAGAGATCTACCATATCATAAG 759 Query 715 CAAAAAAGCTTTGGCTGCTCAAGAAGCAGCGGCTGCTAATTCTGCCATTCCGGGGCAAGG 774 |||||| || ||||||| ||||||||||| || |||||||| || ||||| |||||||| Sbjct 760 CAAAAAGGCACTGGCTGCACAAGAAGCAGCAGCAGCTAATTCCGCAATTCCTGGGCAAGG 819 Query 775 AACAACGATTAACGTTGAAGACACATCTGGAG-CTG-GCAAAAGAGGT-TGCTGCTCTAC 831 ||| |||||||||||||| ||||||||||||| | | | ||||| || || |||||| | Sbjct 820 AACTACGATTAACGTTGATGACACATCTGGAGGC-GCG-AAAAG-GGCATGTTGCTCTTC 876 Query 832 TTAA 835 |||| Sbjct 877 TTAA 880 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37932302415 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5