BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59150.1
Length=1020
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950651 jgi|Araly1|950651|scaffold_802538.1 1123 0.0
Ahg887873 jgi|Araly1|887873|Al_scaffold_0048_6 776 0.0
Ahg485055 jgi|Araly1|485055|fgenesh2_kg.5__1047__AT3G46830.1 758 0.0
> Ahg950651 jgi|Araly1|950651|scaffold_802538.1
Length=694
Score = 1123 bits (608), Expect = 0.0
Identities = 665/693 (96%), Gaps = 2/693 (0%)
Strand=Plus/Plus
Query 162 GGTGAGATCAAAGAGGAAAAATGGCGCATAGGGTAGAACAGGATTATGATTATTTGTTCA 221
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
Sbjct 1 GGTGAGATCAAAGAGGAAAAATGGCGCATAGGGTTGAACAGGATTATGATTATTTATTTA 60
Query 222 AGATCGTGTTGATTGGTGATTCTGGTGTCGGGAAAACAAACATCTTGTCTAGATTCACAA 281
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 61 AGATCGTGTTGATTGGTGATTCTGGTGTTGGGAAATCAAACATCTTGTCTAGATTCACAA 120
Query 282 GGAATGAGTTTTGTTTGGAATCTAAGTCCACTATTGGTGTTGAATTCGCCACCAGAACTC 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGAATGAGTTTTGTTTGGAATCTAAGTCCACTATTGGTGTTGAATTCGCCACCAGAACTC 180
Query 342 TTCAGGTTGAAGGAAAGACTGTTAAGGCCCAGATATGGGACACTGCAGGTCAAGAGCGGT 401
||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||
Sbjct 181 TTCAGGTTGAAGGAAAGACTGTTAAAGCCCAGATCTGGGACACTGCAGGGCAAGAGCGGT 240
Query 402 ACAGAGCTATCACAAGTGCTTATTACAGAGGAGCGGTAGGTGCACTTCTTGTCTATGACA 461
|||||||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct 241 ACAGAGCTATCACAAGCGCTTACTACAGAGGCGCGGTAGGTGCGCTTCTTGTCTATGACA 300
Query 462 TCACTAAAAGACAAACCTTTGACAATGTTCTGA-GGTGGCTACGTGAACTAAGAGACCAT 520
| || ||||||||||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct 301 TTACCAAAAGACAAACCTTTGACAATGT-CTTAAGGTGGCTACGTGAACTAAGAGACCAT 359
Query 521 GCGGATTCCAACATTGTGATCATGATGGCTGGGAACAAAGCTGATCTAAACCACTTGAGA 580
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GCAGATTCCAACATAGTGATCATGATGGCTGGGAACAAAGCTGATCTAAACCACTTGAGA 419
Query 581 TCAGTTGCGGAGGAAGATGGACAGACTCTAGCTGAGACAGAAGGTCTCTCTTTCTTGGAG 640
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TCAGTTGCTGAGGAAGATGGACAGACTCTAGCTGAGACAGAAGGTCTCTCTTTCTTGGAG 479
Query 641 ACATCAGCTCTTGAAGCCACCAATGTGGAGAAAGCATTTCAAACCGTGTTAGCAGAGATT 700
||||| |||||||||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct 480 ACATCTGCTCTTGAAGCCACCAATGTTGAAAAAGCATTTCAAACTGTGTTAGCAGAGATT 539
Query 701 TACCACATCATCAGCAAAAAAGCTTTGGCTGCTCAAGAAGCAGCGGCTGCTAATTCTGCC 760
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 540 TACCACATCATCAGCAAAAAAGCTTTGGCTGCTCAAGAAGCAGCGGCTGCTAATTCCGCG 599
Query 761 ATTCCGGGGCAAGGAACAACGATTAACGTTGAAGACACATCTGGAGCTGGCAAAAGAGGT 820
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 600 ATTCCGGGGCAAGGAACAACGATTAACGTTGGTGACACATCTGGAGCTGGCAAAAGAGGT 659
Query 821 TGCTGCTCTACTTAATTGAAAGTTTAAACTTTC 853
|||||||||||||||||||||||||||||||||
Sbjct 660 TGCTGCTCTACTTAATTGAAAGTTTAAACTTTC 692
> Ahg887873 jgi|Araly1|887873|Al_scaffold_0048_6
Length=504
Score = 776 bits (420), Expect = 0.0
Identities = 467/490 (95%), Gaps = 2/490 (0%)
Strand=Plus/Plus
Query 347 GTTGAAGGAAAGACTGTTAAGGCCCAGATATGGGACACTGCAGGTCAAGAGCGGTACAGA 406
|||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct 16 GTTGAAGGAAAGACTGTTAAAGCCCAGATCTGGGACACTGCAGGGCAAGAGCGGTACAGA 75
Query 407 GCTATCACAAGTGCTTATTACAGAGGAGCGGTAGGTGCACTTCTTGTCTATGACATCACT 466
||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 76 GCTATCACAAGCGCTTACTACAGAGGCGCGGTAGGTGCGCTTCTTGTCTATGACATTACC 135
Query 467 AAAAGACAAACCTTTGACAATGTTC-TGAGGTGGCTACGTGAACTAAGAGACCATGCGGA 525
|||||||||||||||||||||| || | ||||||||||||||||||||||||||||| ||
Sbjct 136 AAAAGACAAACCTTTGACAATG-TCTTAAGGTGGCTACGTGAACTAAGAGACCATGCAGA 194
Query 526 TTCCAACATTGTGATCATGATGGCTGGGAACAAAGCTGATCTAAACCACTTGAGATCAGT 585
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 195 TTCCAACATAGTGATCATGATGGCTGGGAACAAAGCTGATCTAAACCACTTGAGATCAGT 254
Query 586 TGCGGAGGAAGATGGACAGACTCTAGCTGAGACAGAAGGTCTCTCTTTCTTGGAGACATC 645
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 TGCTGAGGAAGATGGACAGACTCTAGCTGAGACAGAAGGTCTCTCTTTCTTGGAGACATC 314
Query 646 AGCTCTTGAAGCCACCAATGTGGAGAAAGCATTTCAAACCGTGTTAGCAGAGATTTACCA 705
|||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct 315 TGCTCTTGAAGCCACCAATGTTGAAAAAGCATTTCAAACTGTGTTAGCAGAGATTTACCA 374
Query 706 CATCATCAGCAAAAAAGCTTTGGCTGCTCAAGAAGCAGCGGCTGCTAATTCTGCCATTCC 765
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 375 CATCATCAGCAAAAAAGCTTTGGCTGCTCAAGAAGCAGCGGCTGCTAATTCCGCGATTCC 434
Query 766 GGGGCAAGGAACAACGATTAACGTTGAAGACACATCTGGAGCTGGCAAAAGAGGTTGCTG 825
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 435 GGGGCAAGGAACAACGATTAACGTTGGTGACACATCTGGAGCTGGCAAAAGAGGTTGCTG 494
Query 826 CTCTACTTAA 835
||||||||||
Sbjct 495 CTCTACTTAA 504
> Ahg485055 jgi|Araly1|485055|fgenesh2_kg.5__1047__AT3G46830.1
Length=1193
Score = 758 bits (410), Expect = 0.0
Identities = 581/664 (88%), Gaps = 10/664 (2%)
Strand=Plus/Plus
Query 177 GAAAAATGGCGCATAGGGTAGAACAGGATTATGATTATTTGTTCAAGATCGTGTTGATTG 236
|||||||| ||||||| ||||| || || |||||||||||||| ||||| ||||||||||
Sbjct 222 GAAAAATGACGCATAGAGTAGATCAAGAATATGATTATTTGTTTAAGATTGTGTTGATTG 281
Query 237 GTGATTCTGGTGTCGGGAAAACAAACATCTTGTCTAGATTCACAAGGAATGAGTTTTGTT 296
||||||||||||| |||||| | || |||||||| |||||||| |||||||||||||| |
Sbjct 282 GTGATTCTGGTGTTGGGAAATCGAATATCTTGTCGAGATTCACCAGGAATGAGTTTTGCT 341
Query 297 TGGAATCTAAGTCCACTATTGGTGTTGAATTCGCCACCAGAACT-CTTCAGGTTGAAGGA 355
|||| ||||| ||||||||||||||||||||||| ||||||||| | |||||||||||||
Sbjct 342 TGGAGTCTAAATCCACTATTGGTGTTGAATTCGCTACCAGAACTAC-TCAGGTTGAAGGA 400
Query 356 AAGACTGTTAAGGCCCAGATATGGGACACTGCAGGTCAAGAGCGGTACAGAGCTATCACA 415
||||| ||||||||||||| ||||||||||||||||| ||||||||||| || |||||
Sbjct 401 AAGACAATTAAGGCCCAGATCTGGGACACTGCAGGTCAGGAGCGGTACAGGGCAATCACC 460
Query 416 AGTGCTTATTACAGAGGAGCGGTAGGTGCACTTCTTGTCTATGACATCACTAAAAGACAA 475
||||||||||||||||| || || ||||||||||||||||||||||| || || |||||
Sbjct 461 AGTGCTTATTACAGAGGCGCAGTGGGTGCACTTCTTGTCTATGACATTACCAAGAGACAG 520
Query 476 ACCTTTGACAATGTTCTGAGGTGGCTACGTGAACTAAGAGACCATGCGGATTCCAACATT 535
|| |||||||||||| | |||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 521 ACTTTTGACAATGTTTTAAGGTGGCTGCGTGAACTGAGAGACCATGCAGATTCCAACATT 580
Query 536 GTGATCATGATGGCTGGGAACAAAGCTGATCTAAACCACTTGAGATCAGTTGCGGAGGAA 595
|||||||||||||||||||||||| | ||||| |||||||||||||| ||||| ||||||
Sbjct 581 GTGATCATGATGGCTGGGAACAAATCCGATCTGAACCACTTGAGATCCGTTGCTGAGGAA 640
Query 596 GATGGACAGACTCTAGCTGAGACAG-AAGGTCTCTCTTTCTTGGAGACATCAGCTCTTGA 654
||||| |||| | | ||||||| || |||||||||||||| |||||||||||||||||||
Sbjct 641 GATGGTCAGAGTTTGGCTGAGA-AGGAAGGTCTCTCTTTCCTGGAGACATCAGCTCTTGA 699
Query 655 AGCCACCAATGTGGAGAAAGCATTTCAAACCGTGTTAGCAGAGATTTACCACATCATCAG 714
||| || || || |||||||| ||||| ||| | |||| |||||| ||||| ||||| ||
Sbjct 700 AGCAACAAACGTTGAGAAAGCGTTTCAGACCATCTTAGGAGAGATCTACCATATCATAAG 759
Query 715 CAAAAAAGCTTTGGCTGCTCAAGAAGCAGCGGCTGCTAATTCTGCCATTCCGGGGCAAGG 774
|||||| || ||||||| ||||||||||| || |||||||| || ||||| ||||||||
Sbjct 760 CAAAAAGGCACTGGCTGCACAAGAAGCAGCAGCAGCTAATTCCGCAATTCCTGGGCAAGG 819
Query 775 AACAACGATTAACGTTGAAGACACATCTGGAG-CTG-GCAAAAGAGGT-TGCTGCTCTAC 831
||| |||||||||||||| ||||||||||||| | | | ||||| || || |||||| |
Sbjct 820 AACTACGATTAACGTTGATGACACATCTGGAGGC-GCG-AAAAG-GGCATGTTGCTCTTC 876
Query 832 TTAA 835
||||
Sbjct 877 TTAA 880
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37932302415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5