BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59170.1
Length=1135
Score E
Sequences producing significant alignments: (Bits) Value
Ahg952254 jgi|Araly1|952254|scaffold_4800010.1 331 6e-90
Ahg917651 jgi|Araly1|917651|Al_scaffold_0008_2402 318 5e-86
Ahg917652 jgi|Araly1|917652|Al_scaffold_0008_2403 174 1e-42
> Ahg952254 jgi|Araly1|952254|scaffold_4800010.1
Length=838
Score = 331 bits (179), Expect = 6e-90
Identities = 253/288 (88%), Gaps = 7/288 (2%)
Strand=Plus/Plus
Query 627 GAAGTATCCTCCGCCAGAACAGTATCCACCGCCGATCAAGAAGTATCCTCCGCC-AATTA 685
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||| | ||
Sbjct 512 GAAGTATCCTCCCCCAGAACAGTATCCACCGCCGATCAAGAAGTATCCACCGCCGACTT- 570
Query 686 AGAAGT-ATCCTCCGCCAGAAGAGTATCCACCACCGATCAAGACTTATCCTCATCCCCCT 744
| | |||| ||| | | |||||||||| |||||||||||||| |||||||| ||
Sbjct 571 A-CCCTCATCCACCG-GTG-A-AGTATCCACCGCCGATCAAGACTTACCCTCATCCGCCG 626
Query 745 GTGAAGTATCCACCGCCTCCGTACAAGACTTACCCTCATCCGCCGATCAAAACTTATCCT 804
|||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 627 GTGAAGTATCCACCACCTCCGTACAAGACTTACCCTCATCCGCCGATCAAGACGTATCCT 686
Query 805 CCTCCGAAAGAATGTCCTCCTCCGCCTGAACATTACCCTTGGCCTCCGAAAAAGAAATAT 864
|||||||| ||||||||||||||||| | ||||||||||| || |||| |||||||||
Sbjct 687 CCTCCGAAGGAATGTCCTCCTCCGCCGGTACATTACCCTTTTCCCCCGATCAAGAAATAT 746
Query 865 CCTCCACCGGTTGAGTATCCGTCGCCGCCATATAAGAAATATCCTCCG 912
||||||||||||| |||||||||||| ||||||||||| ||||| |||
Sbjct 747 CCTCCACCGGTTGTGTATCCGTCGCCACCATATAAGAAGTATCCACCG 794
Score = 315 bits (170), Expect = 6e-85
Identities = 220/243 (91%), Gaps = 7/243 (3%)
Strand=Plus/Plus
Query 51 AAGAAAAATGAAGTCTTGTCTAGCTACTTTTGCTCTCGCAGTGTTAGTAACACAAGGAAG 110
||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||
Sbjct 14 AAGAAAAATGAAGTCTTTTGTAGCTACTTTTGCTCTCGCAGTGTTGGTAACACAAGGAAG 73
Query 111 CATTTTTAGTTTGTGTTTGGCCTCCTCTGCTTCTACAAACTC-TGTTCCTAATTGGTTTC 169
|||||||||||||||||||||||| ||| ||||||||||||| | ||| |||||||||||
Sbjct 74 CATTTTTAGTTTGTGTTTGGCCTCTTCTTCTTCTACAAACTCCTTTTC-TAATTGGTTTC 132
Query 170 ATCATTGGCCGCCGTTTAAATGGGGACCAAAATTTCCATATTCTCCACCTAAACCGCCGC 229
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||
Sbjct 133 ATCATTGGCCGCCGTTTAAATGGCGACCAAAATTTCCATATTCTCCACCTACACCTCCGC 192
Query 230 CAATCGA-GAAATATCCTCCACCGGTGCAGTATCCACCACCGATCAAGAAGTATCCACCG 288
||| | | | ||||||||||| | || |||||||| ||||||||||||||||| |||
Sbjct 193 CAA-CTACG---TATCCTCCACCAGAACAATATCCACCGCCGATCAAGAAGTATCCTCCG 248
Query 289 CCA 291
|||
Sbjct 249 CCA 251
Score = 185 bits (100), Expect = 5e-46
Identities = 197/241 (82%), Gaps = 18/241 (7%)
Strand=Plus/Plus
Query 552 GTATCCTCCGCAAGAACAGTATCCACCACCGATTAAAAAGTATCCTCCGCCAGAA-AAGT 610
||||||||| | |||||| |||||||| ||||| || |||||||||||||||||| || |
Sbjct 200 GTATCCTCCACCAGAACAATATCCACCGCCGATCAAGAAGTATCCTCCGCCAGAACAA-T 258
Query 611 ATCCACCCCCGATCAAGAAGTATCCTCCGCCAGAACAGTATCCACCGCCGATCAAGAAGT 670
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 259 ATCCACCGCCGATCAAGAAGTATCCTCCGCCAGAACAATATCCACCGCCGATCAAGAAGT 318
Query 671 ATCCTCCG-C-CAATTAAGAAGTATCCTCCGCCAGAAGAGTATCCACCACCGATCAAGAC 728
| || ||| | | | | || | | | | | || | | ||||| |||||||| ||
Sbjct 319 ACCCACCGTCGCCGT-ACGA-G-A-CTTAC-CCTCA----T--CCACCGCCGATCAAAAC 367
Query 729 TTATCCTCATCCCCCTGTGAAGTATCCACCGCCTCCGTACAAGACTTACCCTCATCCGCC 788
||| |||||||| || ||||||||||| ||||| | ||| |||||||||||||||||
Sbjct 368 TTACCCTCATCCGCCGGTGAAGTATCCTCCGCCGA--T-CAAAACTTACCCTCATCCGCC 424
Query 789 G 789
|
Sbjct 425 G 425
Score = 174 bits (94), Expect = 1e-42
Identities = 116/127 (91%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 435 GTATCCTCCACCAGAACAGTATTCACCGCCTTTCAAGAAGTATCCTCCGCCAGAACAGTA 494
|||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||| ||
Sbjct 200 GTATCCTCCACCAGAACAATATCCACCGCCGATCAAGAAGTATCCTCCGCCAGAACAATA 259
Query 495 TCCACCACCGATCAAGAAGTATCCTCCGCCAGAACATTATCCACCGCCGATAAAAAAGTA 554
|||||| ||||||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct 260 TCCACCGCCGATCAAGAAGTATCCTCCGCCAGAACAATATCCACCGCCGATCAAGAAGTA 319
Query 555 TCCTCCG 561
|| |||
Sbjct 320 CCCACCG 326
Score = 169 bits (91), Expect = 5e-41
Identities = 255/329 (78%), Gaps = 32/329 (10%)
Strand=Plus/Plus
Query 474 GTATCCTCCGCCAGAACAGTATCCACCACCGATCAAGAAGTATCCTCCGCCAGAACATTA 533
||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 200 GTATCCTCCACCAGAACAATATCCACCGCCGATCAAGAAGTATCCTCCGCCAGAACAATA 259
Query 534 TCCACCGCCGATAAAAAAGTATCCTCCGCAAGAACAGTATCCACCACCGATTAAAAAGTA 593
|||||||||||| || ||||||||||||| |||||| |||||||| ||||| || |||||
Sbjct 260 TCCACCGCCGATCAAGAAGTATCCTCCGCCAGAACAATATCCACCGCCGATCAAGAAGTA 319
Query 594 TCCTCCG-C-CAGAAA-AGTA-TCCACCCCCGATCAAGAAGTATCCTCCGC-CAGAACAG 648
|| ||| | | | | || | | |||| | ||| | || ||| || |||
Sbjct 320 CCCACCGTCGCCGTACGAG-ACTT-ACCCTC-ATCCA-------CCGCCGATCAAAACT- 368
Query 649 TATCC--A-CCGCCGATCAAGAAGTATCCTCCGCCAATTAAGAAGT-ATCCTC--C-GCC 701
|| || | |||||| | ||||||||||||||| || || || | | |||| | |||
Sbjct 369 TACCCTCATCCGCCGGT---GAAGTATCCTCCGCCGATCAA-AACTTACCCTCATCCGCC 424
Query 702 AGAAGA-GTATCCACCACCGATCAAGACTTATCCTCATCCCCCTGTGAAGTATCCACCGC 760
| || |||||| || |||||||| ||||| |||||||| || ||||| ||||| ||||
Sbjct 425 GGT-GAAGTATCCTCCGCCGATCAAAACTTACCCTCATCCGCCGGTGAAATATCCTCCGC 483
Query 761 CTCCGTACAAGACTTACCCTCATCCGCCG 789
| | ||| ||||||||||||||||||
Sbjct 484 CGA--T-CAAAACTTACCCTCATCCGCCG 509
Score = 167 bits (90), Expect = 2e-40
Identities = 119/133 (89%), Gaps = 2/133 (2%)
Strand=Plus/Plus
Query 237 GAAATATCCTCCACCGGTGCAGTATCCACCACCGATCAAGAAGTATCCACCGCC-ACCAT 295
||| |||||||| || | ||||||||||| ||||||||||||||||||||||| | | |
Sbjct 512 GAAGTATCCTCCCCCAGAACAGTATCCACCGCCGATCAAGAAGTATCCACCGCCGA-CTT 570
Query 296 ACGAGCATCCACCGGTGAAGTATCCACCACCGATCAAGACTTACCCTCATCCGCCGGTGA 355
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 571 ACCCTCATCCACCGGTGAAGTATCCACCGCCGATCAAGACTTACCCTCATCCGCCGGTGA 630
Query 356 AGTATCCTCCACC 368
||||||| |||||
Sbjct 631 AGTATCCACCACC 643
Score = 148 bits (80), Expect = 7e-35
Identities = 94/101 (93%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 301 CATCCACCGGTGAAGTATCCACCACCGATCAAGACTTACCCTCATCCGCCGGTGAAGTAT 360
||||| |||||||| ||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 459 CATCCGCCGGTGAAATATCCTCCGCCGATCAAAACTTACCCTCATCCGCCGGTGAAGTAT 518
Query 361 CCTCCACCAGAACAGTATCCACCGCCGATTAAGAAGTATCC 401
||||| ||||||||||||||||||||||| |||||||||||
Sbjct 519 CCTCCCCCAGAACAGTATCCACCGCCGATCAAGAAGTATCC 559
Score = 147 bits (79), Expect = 2e-34
Identities = 134/158 (85%), Gaps = 13/158 (8%)
Strand=Plus/Plus
Query 591 GTATCCTCCGCCAGAA-AAGTATCCACCCCCGATCAAGAAGTATCCTCCGCCAGAACAGT 649
||||||||| |||||| || |||||||| ||||||||||||||||||||||||||||| |
Sbjct 200 GTATCCTCCACCAGAACAA-TATCCACCGCCGATCAAGAAGTATCCTCCGCCAGAACAAT 258
Query 650 ATCCACCGCCGATCAAGAAGTATCCTCCGCCAATTAAGAAGTATCCTCCGCC-AG-AAGA 707
|||||||||||||||||||||||||||||||| || || ||||| ||||| | ||||
Sbjct 259 ATCCACCGCCGATCAAGAAGTATCCTCCGCCAG--AACAA-TATCCACCGCCGATCAAGA 315
Query 708 -GTATCCACCA-C-C-G-ATCAAGACTTATCCTCATCC 740
||| ||||| | | | | | ||||||| ||||||||
Sbjct 316 AGTACCCACCGTCGCCGTA-CGAGACTTACCCTCATCC 352
Score = 134 bits (72), Expect = 2e-30
Identities = 242/318 (76%), Gaps = 35/318 (11%)
Strand=Plus/Plus
Query 226 CCGCCAATCGAGAAATATCCTCCACCGGTGCAGTATCCACCACCGATCAAGAAGTATCCA 285
||||| ||| |||| |||||||| || | || |||||||| |||||||||||||| |||
Sbjct 264 CCGCCGATCAAGAAGTATCCTCCGCCAGAACAATATCCACCGCCGATCAAGAAGTACCCA 323
Query 286 CCGCCACCATACGAGCATC-CACCGGTGAAGTATCCACCACCGATCAAGACTTACCCTCA 344
||| | || |||||| | | ||| | ||||||| |||||||| |||||||||||
Sbjct 324 CCGTCGCCGTACGAG-A-CTTACC-CT----CATCCACCGCCGATCAAAACTTACCCTCA 376
Query 345 TCCGCCGGTGAAGTATCCTCCACC-AG-AACAGT-ATCC--A-CCGCCGATTAAGAAGTA 398
||||||||||||||||||||| || | || | | | || | |||||| | ||||||
Sbjct 377 TCCGCCGGTGAAGTATCCTCCGCCGATCAAAACTTACCCTCATCCGCCGGT---GAAGTA 433
Query 399 TCCTCCACC-AG-AACAGT-ATCC--A-CCGCCGATTAAGAAGTATCCTCCACC-AG-AA 450
|||||| || | || | | | || | |||||| | || | |||||||| || | ||
Sbjct 434 TCCTCCGCCGATCAAAACTTACCCTCATCCGCCGGTGAA-A--TATCCTCCGCCGATCAA 490
Query 451 CAGT-AT--TCA-CCGCCTTTCAAGAAGTATCCTCCGCCAGAACAGTATCCACCACCGAT 506
| | | ||| ||||| | |||||||||||| ||||||||||||||||| |||||
Sbjct 491 AACTTACCCTCATCCGCCGGT---GAAGTATCCTCCCCCAGAACAGTATCCACCGCCGAT 547
Query 507 CAAGAAGTATCCTCCGCC 524
|||||||||||| |||||
Sbjct 548 CAAGAAGTATCCACCGCC 565
Score = 126 bits (68), Expect = 3e-28
Identities = 157/197 (80%), Gaps = 18/197 (9%)
Strand=Plus/Plus
Query 301 CATCCACCGGTGAAGTATCCACCACCGATCAAGACTTACCCTCATCCGCCGGTGAAGTAT 360
||||| |||||||||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 375 CATCCGCCGGTGAAGTATCCTCCGCCGATCAAAACTTACCCTCATCCGCCGGTGAAGTAT 434
Query 361 CCTCCACC-AG-AACAGT-ATCC--A-CCGCCGATTAAGAAGTATCCTCCACC-AG-AAC 412
||||| || | || | | | || | |||||| | || | |||||||| || | ||
Sbjct 435 CCTCCGCCGATCAAAACTTACCCTCATCCGCCGGTGAA-A--TATCCTCCGCCGATCAAA 491
Query 413 AGT-ATCC--A-CCGCCGATTAAGAAGTATCCTCCACCAGAACAGTATTCACCGCCTTTC 468
| | | || | |||||| | |||||||||||| |||||||||||| ||||||| ||
Sbjct 492 ACTTACCCTCATCCGCCGGT---GAAGTATCCTCCCCCAGAACAGTATCCACCGCCGATC 548
Query 469 AAGAAGTATCCTCCGCC 485
||||||||||| |||||
Sbjct 549 AAGAAGTATCCACCGCC 565
Score = 124 bits (67), Expect = 1e-27
Identities = 151/189 (80%), Gaps = 16/189 (8%)
Strand=Plus/Plus
Query 630 GTATCCTCCGCCAGAACAGTATCCACCGCCGATCAAGAAGTATCCTCCGCCAATTAAGAA 689
||||||||| |||||||| ||||||||||||||||||||||||||||||||| || ||
Sbjct 200 GTATCCTCCACCAGAACAATATCCACCGCCGATCAAGAAGTATCCTCCGCCAG--AACAA 257
Query 690 GTATCCTCCGCC-AG-AAGA-GTATCCACCACC-GATCAAGACTTATCCTCATCCCC-CT 744
||||| ||||| | |||| |||||| || || || ||| | |||| | || |
Sbjct 258 -TATCCACCGCCGATCAAGAAGTATCCTCCGCCAGAACAA---T-ATCCACCGCCGATCA 312
Query 745 GTGAAGTATCCACCGCCTCCGTACAAGACTTACCCTCATCC---GCCGATCAAAACTTAT 801
|||||| |||||| | |||||| |||||||||||||||| |||||||||||||||
Sbjct 313 A-GAAGTACCCACCGTCGCCGTACGAGACTTACCCTCATCCACCGCCGATCAAAACTTAC 371
Query 802 CCTCCTCCG 810
|||| ||||
Sbjct 372 CCTCATCCG 380
> Ahg917651 jgi|Araly1|917651|Al_scaffold_0008_2402
Length=393
Score = 318 bits (172), Expect = 5e-86
Identities = 242/275 (88%), Gaps = 7/275 (3%)
Strand=Plus/Plus
Query 627 GAAGTATCCTCCGCCAGAACAGTATCCACCGCCGATCAAGAAGTATCCTCCGCC-AATTA 685
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||| | ||
Sbjct 124 GAAGTATCCTCCCCCAGAACAGTATCCACCGCCGATCAAGAAGTATCCACCGCCGACTT- 182
Query 686 AGAAGT-ATCCTCCGCCAGAAGAGTATCCACCACCGATCAAGACTTATCCTCATCCCCCT 744
| | |||| ||| | | |||||||||| |||||||||||||| |||||||| ||
Sbjct 183 A-CCCTCATCCACCG-GTG-A-AGTATCCACCGCCGATCAAGACTTACCCTCATCCGCCG 238
Query 745 GTGAAGTATCCACCGCCTCCGTACAAGACTTACCCTCATCCGCCGATCAAAACTTATCCT 804
|||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 239 GTGAAGTATCCACCACCTCCGTACAAGACTTACCCTCATCCGCCGATCAAGACGTATCCT 298
Query 805 CCTCCGAAAGAATGTCCTCCTCCGCCTGAACATTACCCTTGGCCTCCGAAAAAGAAATAT 864
|||||||| ||||||||||||||||| | ||||||||||| || |||| |||||||||
Sbjct 299 CCTCCGAAGGAATGTCCTCCTCCGCCGGTACATTACCCTTTTCCCCCGATCAAGAAATAT 358
Query 865 CCTCCACCGGTTGAGTATCCGTCGCCGCCATATAA 899
||||||||||||| |||||||||||| ||||||||
Sbjct 359 CCTCCACCGGTTGTGTATCCGTCGCCACCATATAA 393
Score = 167 bits (90), Expect = 2e-40
Identities = 119/133 (89%), Gaps = 2/133 (2%)
Strand=Plus/Plus
Query 237 GAAATATCCTCCACCGGTGCAGTATCCACCACCGATCAAGAAGTATCCACCGCC-ACCAT 295
||| |||||||| || | ||||||||||| ||||||||||||||||||||||| | | |
Sbjct 124 GAAGTATCCTCCCCCAGAACAGTATCCACCGCCGATCAAGAAGTATCCACCGCCGA-CTT 182
Query 296 ACGAGCATCCACCGGTGAAGTATCCACCACCGATCAAGACTTACCCTCATCCGCCGGTGA 355
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 183 ACCCTCATCCACCGGTGAAGTATCCACCGCCGATCAAGACTTACCCTCATCCGCCGGTGA 242
Query 356 AGTATCCTCCACC 368
||||||| |||||
Sbjct 243 AGTATCCACCACC 255
Score = 148 bits (80), Expect = 7e-35
Identities = 94/101 (93%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 301 CATCCACCGGTGAAGTATCCACCACCGATCAAGACTTACCCTCATCCGCCGGTGAAGTAT 360
||||| |||||||| ||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 71 CATCCGCCGGTGAAATATCCTCCGCCGATCAAAACTTACCCTCATCCGCCGGTGAAGTAT 130
Query 361 CCTCCACCAGAACAGTATCCACCGCCGATTAAGAAGTATCC 401
||||| ||||||||||||||||||||||| |||||||||||
Sbjct 131 CCTCCCCCAGAACAGTATCCACCGCCGATCAAGAAGTATCC 171
Score = 106 bits (57), Expect = 4e-22
Identities = 144/183 (79%), Gaps = 18/183 (10%)
Strand=Plus/Plus
Query 315 GTATCCACCACCGATCAAGACTTACCCTCATCCGCCGGTGAAGTATCCTCCACC-AG-AA 372
|||||| || |||||||| |||||||||||||||||||||||||||||||| || | ||
Sbjct 1 GTATCCTCCGCCGATCAAAACTTACCCTCATCCGCCGGTGAAGTATCCTCCGCCGATCAA 60
Query 373 CAGT-ATCC--A-CCGCCGATTAAGAAGTATCCTCCACC-AG-AACAGT-ATCC--A-CC 422
| | | || | |||||| | || | |||||||| || | || | | | || | ||
Sbjct 61 AACTTACCCTCATCCGCCGGTGAA-A--TATCCTCCGCCGATCAAAACTTACCCTCATCC 117
Query 423 GCCGATTAAGAAGTATCCTCCACCAGAACAGTATTCACCGCCTTTCAAGAAGTATCCTCC 482
|||| | |||||||||||| |||||||||||| ||||||| ||||||||||||| ||
Sbjct 118 GCCGGT---GAAGTATCCTCCCCCAGAACAGTATCCACCGCCGATCAAGAAGTATCCACC 174
Query 483 GCC 485
|||
Sbjct 175 GCC 177
> Ahg917652 jgi|Araly1|917652|Al_scaffold_0008_2403
Length=207
Score = 174 bits (94), Expect = 1e-42
Identities = 116/127 (91%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 435 GTATCCTCCACCAGAACAGTATTCACCGCCTTTCAAGAAGTATCCTCCGCCAGAACAGTA 494
|||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||| ||
Sbjct 20 GTATCCTCCACCAGAACAATATCCACCGCCGATCAAGAAGTATCCTCCGCCAGAACAATA 79
Query 495 TCCACCACCGATCAAGAAGTATCCTCCGCCAGAACATTATCCACCGCCGATAAAAAAGTA 554
|||||| ||||||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct 80 TCCACCGCCGATCAAGAAGTATCCTCCGCCAGAACAATATCCACCGCCGATCAAGAAGTA 139
Query 555 TCCTCCG 561
|| |||
Sbjct 140 CCCACCG 146
Score = 169 bits (91), Expect = 5e-41
Identities = 116/128 (91%), Gaps = 2/128 (2%)
Strand=Plus/Plus
Query 552 GTATCCTCCGCAAGAACAGTATCCACCACCGATTAAAAAGTATCCTCCGCCAGAA-AAGT 610
||||||||| | |||||| |||||||| ||||| || |||||||||||||||||| || |
Sbjct 20 GTATCCTCCACCAGAACAATATCCACCGCCGATCAAGAAGTATCCTCCGCCAGAACAA-T 78
Query 611 ATCCACCCCCGATCAAGAAGTATCCTCCGCCAGAACAGTATCCACCGCCGATCAAGAAGT 670
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 79 ATCCACCGCCGATCAAGAAGTATCCTCCGCCAGAACAATATCCACCGCCGATCAAGAAGT 138
Query 671 ATCCTCCG 678
| || |||
Sbjct 139 ACCCACCG 146
Score = 163 bits (88), Expect = 2e-39
Identities = 114/127 (90%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 474 GTATCCTCCGCCAGAACAGTATCCACCACCGATCAAGAAGTATCCTCCGCCAGAACATTA 533
||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 20 GTATCCTCCACCAGAACAATATCCACCGCCGATCAAGAAGTATCCTCCGCCAGAACAATA 79
Query 534 TCCACCGCCGATAAAAAAGTATCCTCCGCAAGAACAGTATCCACCACCGATTAAAAAGTA 593
|||||||||||| || ||||||||||||| |||||| |||||||| ||||| || |||||
Sbjct 80 TCCACCGCCGATCAAGAAGTATCCTCCGCCAGAACAATATCCACCGCCGATCAAGAAGTA 139
Query 594 TCCTCCG 600
|| |||
Sbjct 140 CCCACCG 146
Score = 147 bits (79), Expect = 2e-34
Identities = 134/158 (85%), Gaps = 13/158 (8%)
Strand=Plus/Plus
Query 591 GTATCCTCCGCCAGAA-AAGTATCCACCCCCGATCAAGAAGTATCCTCCGCCAGAACAGT 649
||||||||| |||||| || |||||||| ||||||||||||||||||||||||||||| |
Sbjct 20 GTATCCTCCACCAGAACAA-TATCCACCGCCGATCAAGAAGTATCCTCCGCCAGAACAAT 78
Query 650 ATCCACCGCCGATCAAGAAGTATCCTCCGCCAATTAAGAAGTATCCTCCGCC-AG-AAGA 707
|||||||||||||||||||||||||||||||| || || ||||| ||||| | ||||
Sbjct 79 ATCCACCGCCGATCAAGAAGTATCCTCCGCCAG--AACAA-TATCCACCGCCGATCAAGA 135
Query 708 -GTATCCACCA-C-C-G-ATCAAGACTTATCCTCATCC 740
||| ||||| | | | | | ||||||| ||||||||
Sbjct 136 AGTACCCACCGTCGCCGTA-CGAGACTTACCCTCATCC 172
Score = 124 bits (67), Expect = 1e-27
Identities = 151/189 (80%), Gaps = 16/189 (8%)
Strand=Plus/Plus
Query 630 GTATCCTCCGCCAGAACAGTATCCACCGCCGATCAAGAAGTATCCTCCGCCAATTAAGAA 689
||||||||| |||||||| ||||||||||||||||||||||||||||||||| || ||
Sbjct 20 GTATCCTCCACCAGAACAATATCCACCGCCGATCAAGAAGTATCCTCCGCCAG--AACAA 77
Query 690 GTATCCTCCGCC-AG-AAGA-GTATCCACCACC-GATCAAGACTTATCCTCATCCCC-CT 744
||||| ||||| | |||| |||||| || || || ||| | |||| | || |
Sbjct 78 -TATCCACCGCCGATCAAGAAGTATCCTCCGCCAGAACAA---T-ATCCACCGCCGATCA 132
Query 745 GTGAAGTATCCACCGCCTCCGTACAAGACTTACCCTCATCC---GCCGATCAAAACTTAT 801
|||||| |||||| | |||||| |||||||||||||||| |||||||||||||||
Sbjct 133 A-GAAGTACCCACCGTCGCCGTACGAGACTTACCCTCATCCACCGCCGATCAAAACTTAC 191
Query 802 CCTCCTCCG 810
|||| ||||
Sbjct 192 CCTCATCCG 200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42316437870
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5