BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59180.1
Length=845
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950648 jgi|Araly1|950648|scaffold_802535.1 942 0.0
> Ahg950648 jgi|Araly1|950648|scaffold_802535.1
Length=575
Score = 942 bits (510), Expect = 0.0
Identities = 550/569 (97%), Gaps = 3/569 (1%)
Strand=Plus/Plus
Query 65 agagagagagaAGTCGAGATGTTTTTCCACATAGTATTGGAGCGGAACATGCAGTTGCAT 124
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 7 AGAGAGAGAGAAGTCGAGATGTTCTTCCACATAGTATTGGAGCGGAACATGCAGTTGCAT 66
Query 125 CCTCGTTTCTTTGGTCGTAACCTAAAAGAAAACCTCGTATCTAAGCTCATGAAAGATGTC 184
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 67 CCTCGTTTCTTTGGTCGAAACCTTCGTGAAAACCTCGTATCTAAGCTCATGAAAGATGTC 126
Query 185 GAAGGCACTTGCAGTGGCCGACATGGATTTGTAGTGGCGATAACTGGAATAGATA-CAAT 243
|||||||||||||||||||| |||||||||||||||||||||||||||||||| | | ||
Sbjct 127 GAAGGCACTTGCAGTGGCCGTCATGGATTTGTAGTGGCGATAACTGGAATAGAGAGC-AT 185
Query 244 AGGAAAGGGTTTGATCAGAGATGGGACTGGTTTTGTCACCTTTCCAGTTAAATACCAATG 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 AGGAAAGGGTTTGATCAGAGATGGGACTGGTTTTGTCACCTTTCCAGTTAAATACCAATG 245
Query 304 CGTCGTTTTCAGACCTTTCAAAGGCGAGATTTTGGAAGCTGTTGTCACTTTGGTCAATAA 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 CGTCGTTTTCAGACCTTTCAAAGGCGAGATTTTGGAAGCTGTTGTCACTTTGGTCAATAA 305
Query 364 GATGGGATTCTTCGCTGAAGCTGGCCCTGTTCAGATTTTTGTGTCTAAGCATTTGATTCC 423
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 306 GATGGGATTCTTCGCTGAAGCTGGCCCTGTTCAGATTTTTGTGTCCAAGCATTTGATACC 365
Query 424 AGATGATATGGAGTTTCAAGCTGGAGACATGCCTAACTATACCACATCAGATGGATCAGT 483
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 366 AGATGATATGGAGTTTCAAGCTGGAGACATGCCTAATTATACTACATCAGATGGATCAGT 425
Query 484 TAAGATCCAGAAGGAGTGTGAAGTGAGACTAAAGATTATTGGAACAAGAGTTGATGCCAC 543
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 TAAGATCCAGAAGGAATGTGAAGTGAGACTAAAGATTATTGGAACAAGAGTTGATGCCAC 485
Query 544 TGCGATTTTTTGTGTGGGTACCATCAAAGACGATTTTTTGGGAGTCATAAACGACCCTGC 603
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 486 TGAGATTTTTTGTGTGGGTACCATCAAAGACGATTTTTTGGGAGTCATAAACGATCCTGC 545
Query 604 AGCGGCATAAAAAGTTTCAAGCAGATTTC 632
|||||||||||| ||||| ||||||||||
Sbjct 546 AGCGGCATAAAA-GTTTCGAGCAGATTTC 573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31260791940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5