BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59190.1
Length=2082
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950647 jgi|Araly1|950647|scaffold_802534.1 3179 0.0
> Ahg950647 jgi|Araly1|950647|scaffold_802534.1
Length=2122
Score = 3179 bits (1721), Expect = 0.0
Identities = 1962/2081 (94%), Gaps = 6/2081 (0%)
Strand=Plus/Plus
Query 1 ATGGGAACACTTCCTGAGATTAAGTACTCACCTCCCTCTCACCATCTCAGTATACTCCAA 60
||||||||||||||||||||| |||||||||| || ||||||||||||||||| ||||||
Sbjct 21 ATGGGAACACTTCCTGAGATTGAGTACTCACCACCATCTCACCATCTCAGTATGCTCCAA 80
Query 61 AAACTTGTTGGCACTATTGCTGCATCGCATTTGTTAG-TTAGAAGTTATAAAAGGAGCTT 119
|||||||||||||||| |||||||||| ||||||| | ||||||| ||||||||||||||
Sbjct 81 AAACTTGTTGGCACTAATGCTGCATCGAATTTGTT-GATTAGAAGCTATAAAAGGAGCTT 139
Query 120 CAATGGATTCGCTGCCAATCTATCTCAAGCCGAGAGTCAGAAACTGCAAAATATGAAAGA 179
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 CAACGGATTCGCTGCCAATCTATCTCAAGCCGAGAGTCAGAAACTGCAAAATATGAAAGA 199
Query 180 GGTAGTGTCAGTGTTTCCAAGCAAGAGTCATGAACTGACGACAACAAGATCATGGGACTT 239
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 200 GGTAGTGTCTGTGTTTCCAAGCAAAAGTCATGAACTGACGACAACAAGATCATGGGACTT 259
Query 240 TGTCGGATTTGGCGAGAAAGCGAGACGAGAGAGTGTGAAAGAAAGTGATGTTATTGTCGG 299
||||||||||||||||| ||| | ||| ||||||||||||||||||||||||||||||||
Sbjct 260 TGTCGGATTTGGCGAGAGAGCAAAACGTGAGAGTGTGAAAGAAAGTGATGTTATTGTCGG 319
Query 300 AGTGATTGACAGTGGAATCTGGCCGGAATCTGAGAGCTTTGACGACGAAGGTTTTGGTCC 359
|||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 320 AGTGATAGACAGCGGAATCTGGCCGGAATCTGAGAGCTTTGACGACAAAGGTTTTGGTCC 379
Query 360 GCCTCCaaaaaaaTGGAAAGGTTCCTGTAAAGGTGGCCTAAAATTCGCTTGCAACAACAA 419
||||||||| |||||||||||||| ||||||||||||||||| ||| |||||||||||||
Sbjct 380 GCCTCCAAAGAAATGGAAAGGTTCTTGTAAAGGTGGCCTAAACTTCACTTGCAACAACAA 439
Query 420 GCTCATCGGAGCTAGGTTTTACAATAAATTTGCCGACTCAGCAAGAGATGAGGAAGGCCA 479
||||||||||||||||||||||| |||||| | || ||||||||||| |||||||||||
Sbjct 440 ACTCATCGGAGCTAGGTTTTACAACAAATTTTCTGAGTCAGCAAGAGACGAGGAAGGCCA 499
Query 480 TGGAACCCACACTGCGTCAACGGCTGCTGGTAATGCGGTTCAAGCTGCTAGCTTCTACGG 539
||| || ||||||||||| ||||||||||||||||| |||||||| || ||||| |||||
Sbjct 500 TGGGACACACACTGCGTCGACGGCTGCTGGTAATGCAGTTCAAGCCGCCAGCTTTTACGG 559
Query 540 TTTGGCTCAAGGTACTGCTCGTGGTGGAGTTCCCTCGGCGAGAATAGCCGCATATAAAGT 599
||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 560 CCTGGCTCAAGGTACGGCTCGTGGTGGAGTTCCCTCGGCGAGAATCGCCGCCTATAAAGT 619
Query 600 CTGCTTCAACCGCTGCAACGATGTAGATATTCTGGCTGCGTTTGATGATGCCATTGCCGA 659
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 CTGCTTCAAACGCTGCAACGATGTAGATATTCTGGCTGCGTTTGATGATGCCATTGCCGA 679
Query 660 TGGTGTTGATGTTATCTCGATCTCAATCTCAGCCGATTACGTCTCCAATTTATTAAACGC 719
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 680 TGGTGTTGATGTTATCTCGATCTCAATCTCAGTCGATTACGTCTCCAATTTATTAAACGC 739
Query 720 TTCTGTAGCCATTGGTTCTTTTCACGCAATGATGAGAGGAATCATCACGGCAGGTTCAGC 779
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 740 TTCTGTAGCCATTGGTTCTTTTCACGCAATGTTGAGAGGAATCATCACGGCGGGTTCAGC 799
Query 780 TGGGAACAATGGGCCTGATCAAGGTTCGGTGGCTAATGTATCGCCATGGATGATAACCGT 839
||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct 800 TGGGAACAATGGGCCTGATCAAGGTTCGGTGGCAAATGTATCACCGTGGATGATAACCGT 859
Query 840 TGCAGCCAGCGGTACGGACCGGCAGTT-CATTGACAGAGTCGTTCTTGGTAACGGAAAAG 898
|| ||||||| ||| ||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 860 CGCTGCCAGCGCTACAGACCGGC-GTTTCATTGACAGAGTCGTTCTTGGTAACGGAAAAG 918
Query 899 CATTAACGGGTATATCAGTTAATACATTCAATCTCAATGGGACAAAGTTCCCGATCGTTT 958
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 919 CATTAACGGGTATATCAGTTAATCCATTCAATCTCAATGGGACAAAGTTCCCGATCGTTT 978
Query 959 ACGGCCAAAACGTGTCGAGAAATTGTTCCCAAGCCCAAGCCGGTTATTGTTCAAGTGGGT 1018
|||||||||||||||| ||||| |||||||||||| ||||||||| ||| ||||||||||
Sbjct 979 ACGGCCAAAACGTGTCTAGAAAATGTTCCCAAGCCGAAGCCGGTTTTTGCTCAAGTGGGT 1038
Query 1019 GTGTGGATAGTGAGCTGGTGAAAGGGAAGATCGTTCTATGTGACGACTTCCTAGGATATA 1078
|||| || || || ||||| |||||||||||||| |||||||| ||||||||||||||||
Sbjct 1039 GTGTCGACAGCGACCTGGTCAAAGGGAAGATCGTCCTATGTGATGACTTCCTAGGATATA 1098
Query 1079 GAGAAGCTTACTTAGCTGGAGCCATTGGAGTCATTGTTCAAAACACATTGCTTCCAGACA 1138
|||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||
Sbjct 1099 GAGAAGCTTACTTAGCTGGAGCCATTGGAGCCATTGCTCAAAACACATTGTTTCCAGACA 1158
Query 1139 GCGCATTTGTGGTTCCCTTTCCTGCCTCTTCTCTGGGATTTGAGGACTACAAATCTATCA 1198
|||| |||||| |||| ||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1159 GCGCCTTTGTGTTTCCATTTCCTGCCTCTTCTCTTGGTTTTGAGGACTACAAATCTATCA 1218
Query 1199 AGTCATACATTGAATCTGCAGAGCCTCCACAAGCAGAGATACTAAGAACCGAGGAGATAG 1258
|||||||||| | ||||||||||||||||||||| |||||||| ||||||||||||| ||
Sbjct 1219 AGTCATACATCGTATCTGCAGAGCCTCCACAAGCGGAGATACTGAGAACCGAGGAGACAG 1278
Query 1259 TAGATAGAGAAGCTCCATATGTTCCATCTTTTTCTTCTCGCGGGCCAAGTTTCGTCATTC 1318
| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1279 TTGATAGAGAAGCTCCTTATGTTCCATCTTTCTCTTCTCGCGGGCCAAGTTTCGTCATTC 1338
Query 1319 AGAACCTCTTGAAGCCTGACGTAAGTGCACCTGGATTAGAGATTCTGGCTGCATTTTCTC 1378
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1339 AGAACCTCTTGAAGCCTGACGTAAGTGCACCTGGATTAGAGATTTTGGCTGCATTTTCTC 1398
Query 1379 CGGTAGCTTCTCCTTCAAGTTTTTTGAACCCTGAGGACAAGAGAAGTGTGAGGTATAGTG 1438
|||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 1399 CGGTAGCTTCTCCTTCAAGTTTATTGAACCCTGTGGACAAGAGAAGTGTGAGGTATAGTT 1458
Query 1439 TAATGAGTGGCACATCAATGGCTTGTCCTCATGTGGCAGGTGTAGCGGCTTATGTCAAGT 1498
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1459 TTATGAGTGGCACATCAATGGCTTGTCCTCATGTGGCAGGTGTAGCGGCTTATGTCAAGT 1518
Query 1499 CTTTTCACCCCGACTGGTCTCCCTCGGCAATCAAATCCGCTATAATGACCACCGCTACCC 1558
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1519 CTTTTCACCCTGACTGGTCTCCCTCGGCAATCAAATCCGCTATAATGACGACCGCTACCC 1578
Query 1559 CCATGAACCTTAAGAAGAACCCCGAGCAAGAATTTGCATATGGATCAGGCCAAATTAACC 1618
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1579 CCATGAACCTTAAGAAGAACCCCGAGCAAGAATTTGCATATGGGTCAGGCCAAATTAACC 1638
Query 1619 CGACCAAAGCAAGTGACCCCGGACTTGTATATGAAGTAGAAACAGAAGATTACCTCAAAA 1678
||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||||||
Sbjct 1639 CGACCAAAGCAAGCGACCCAGGACTTGTGTATGAAGTAGAAACAGACGATTACCTCAAAA 1698
Query 1679 TGTTATGTGCAGAGGGTTTTGATTCAACAACGCTCACAACAACCTCAGGACAGAACGTCA 1738
|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1699 TGTTATGTGCAGAGGGTTTTGATTCAACGTCGCTCACAAAAACCTCAGGACAGAACGTCA 1758
Query 1739 CATGTTCGGAAAGAACAGAAGTCAAGGATCTGAATTACCCAACAATGACTACGTTTGTCT 1798
| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1759 CTTGCTCGGAAAGAACAGAAGTCAAGAATCTGAATTACCCAACAATGACTACGTTTGTCT 1818
Query 1799 CTTCTCTTGATCCATTCAATGTCACGTTTAAAAGAACTGTCACTAATGTTGGATTCCCAA 1858
|| |||||||||||||||||||||| ||||||||||| || |||||||||||| ||||||
Sbjct 1819 CTGCTCTTGATCCATTCAATGTCACATTTAAAAGAACCGTTACTAATGTTGGAATCCCAA 1878
Query 1859 ACTCTACGTACAAGGCAAGTGTTGTTCCTCTCCAACCGGAGCTTCAGATTAGCATAGAAC 1918
||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 1879 ACTCTACGTACAAGGCAAGTGTTGTTCCTCTCCAACCAGATATTCAGATTCGCATAGAAC 1938
Query 1919 CAGAAATACTGAGATTCGGTTTCCTGGAGGAGAAGAAATCTTTTGTTGTGACCATCTCTG 1978
||||||||||||||||||||||| || ||||||||||| | |||||||||||||||||||
Sbjct 1939 CAGAAATACTGAGATTCGGTTTCTTGAAGGAGAAGAAAACGTTTGTTGTGACCATCTCTG 1998
Query 1979 GTAAAGAACTGAAGG-ATGGAAGTTTTGTAAGTTCGTCTGTGGTTTGGTCTGATGGGAGT 2037
|||||||||| |||| |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1999 GTAAAGAACT-AAGGGATGGAAGTATTCTAAGTTCGTCTGTGGTTTGGTCTGATGGGAGT 2057
Query 2038 CACAGTGTCAGAAGTCCAATCGTTGCTTACTCAATCCAGCC 2078
|||||||||||||| ||||||||||||||||||||||||||
Sbjct 2058 CACAGTGTCAGAAGCCCAATCGTTGCTTACTCAATCCAGCC 2098
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78313543720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5