BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59200.1
Length=1635
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496037 jgi|Araly1|496037|fgenesh2_kg.8__1853__AT5G59200.1 1317 0.0
> Ahg496037 jgi|Araly1|496037|fgenesh2_kg.8__1853__AT5G59200.1
Length=1721
Score = 1317 bits (713), Expect = 0.0
Identities = 817/868 (94%), Gaps = 3/868 (0%)
Strand=Plus/Plus
Query 770 CAGCTGTCTGTGTTTTATCCGCATGCTCGGATTTAGGTGCGTTGGAGCTCGGGCGGT-GG 828
||||||||||||||||||| || ||||||||||| |||||||||||||||||||| | ||
Sbjct 855 CAGCTGTCTGTGTTTTATCTGCCTGCTCGGATTTGGGTGCGTTGGAGCTCGGGCGCTGGG 914
Query 829 GTACATTCGTTTGTTGAGAACCAAAGGATGGAGCTTAGTAATTTCGTAGGTAATGCGTTG 888
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||
Sbjct 915 GTACATTCGTTTGTTGAGAACCAAAAAATGGAGCTTAGTAATTTCGTAGGAAATGCTTTG 974
Query 889 ATCAATATGTACTCCAGGTGTGGTGATATCAATGAGGCAAGGCGGGTTTT-TAGGGTAAT 947
|||||||||||||||||||||||||||||||||| ||||| ||||||||| |||| |||
Sbjct 975 ATCAATATGTACTCCAGGTGTGGTGATATCAATGTGGCAAAGCGGGTTTTCAAGGG-AAT 1033
Query 948 GCGAGACAAAGATGTCATATCATATAACACGATGATTTCTGGATTAGCAATGCATGGGGC 1007
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1034 GCGAGACAAAGATGTCATTTCATATAACACGATGATTTCTGGATTAGCAATGCATGGAGC 1093
Query 1008 TAGCGTTGAAGCTATCAATGAATTTCGGGATATGGTGAACAGAGGATTTAGGCCGAATCA 1067
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1094 TAGCGTTGAAGCTATCAATGTATTTCGGGATATGGTGAACAGAGGATTTAGGCCGAATCA 1153
Query 1068 GGTGACTTTAGTTGCTCTTTTAAACGCATGTAGCCATGGAGGTTTGTTGGATATAGGGCT 1127
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1154 GGTGACTTTAGTTGCTCTTTTAAACGCATGTAGCCATGGAGGTTTGCTGGATATAGGACT 1213
Query 1128 TGAAGTATTTAATTCTATGAAGAGAGTTTTTAATGTTGAACCTCAGATTGAGCATTATGG 1187
|||||| |||||||||||| ||||||||| | ||||||||| |||||||||||||||||
Sbjct 1214 TGAAGTTTTTAATTCTATGTGGAGAGTTTTCAGTGTTGAACCACAGATTGAGCATTATGG 1273
Query 1188 ATGTATTGTCGATCTTCTTGGTCGAGTGGGGCGACTAGAGGAGGCTTACAGATTCATAGA 1247
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1274 ATGTATTGTCGATCTTCTTGGTCGAGTGGGGAGACTAGAGGAGGCTTACAGATTCATAGA 1333
Query 1248 AAATATTCCAATAGAGCCGGATCATATCATGTTAGGAACTCTTTTGAGTGCTTGTAAGAT 1307
||| | || ||||| ||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1334 GAATCTGCCGATAGAACCGGATCATATCATGTTAGGAGCTCTTCTGAGTGCTTGTAAGAT 1393
Query 1308 CCATGGAAACATGGAACTCGGTGAAAAAATCGCTAAGAGACTATTCGAATCTGAGAATCC 1367
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1394 CCATGGAAACATGGAACTCGGTGAAAAAATCGCCAAGAGACTATTCGAATCTGAGAATTC 1453
Query 1368 AGATTCTGGGACATACGTTCTCTTATCAAATCTTTACGCTTCATCTGGGAAATGGAAAGA 1427
|||||||||||||||||||||| |||| || | ||||||||||| ||||||||||||||
Sbjct 1454 AGATTCTGGGACATACGTTCTCCTATCGCATATATACGCTTCATCAGGGAAATGGAAAGA 1513
Query 1428 ATCTACAGAAATCAGAGAGAGTATGAGAGATTCAGGGATTGAGAAGGAACCAGGATGCAG 1487
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1514 ATCTACAGAAATCAGAGAAAGTATGAGAGAATCAGGGATTGAGAAGGAACCAGGATGCAG 1573
Query 1488 TACTATCGAAGTGGACAATCAGATCCATGAGTTTCTTGTGGGAGATATAGCACACCCTCA 1547
|||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 1574 TACTATCGAAGTGGACAACCAGATCCATGAGTTTCATGTGGGAGATATAGCACACCCTCG 1633
Query 1548 TAAAGAAGCAATTTATCAGAGATTACAAGAACTGAATCGAATTCTTAGATTCAAAGAGAA 1607
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1634 TAAAGAAGCAATTTATCAGAGATTACAAGAACTGAATCGAAATCTTAGATTCAAAGAGAA 1693
Query 1608 TCAAATAGATATTATAATGGGTTTCTAG 1635
| ||| ||||||||||| |||||| |||
Sbjct 1694 TGAAACAGATATTATAACGGGTTTGTAG 1721
Score = 1070 bits (579), Expect = 0.0
Identities = 689/743 (93%), Gaps = 4/743 (1%)
Strand=Plus/Plus
Query 1 ATGATTTCTTCCTTGGCAGCGATCACCGGAGGGCCTTCAACTTTCCGGCGTGATCCCGAT 60
|||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 117 ATGATTTCCTCCTTGGCGGCGATCACCGGAGGGCCATCAACATTCCGGCGTGATCCCGAT 176
Query 61 TCAAACACTCTCAGGCTTTCACGCAGGAAAACATTAATCTCTGTATTACGAAGCTGCAAG 120
|||| ||||||||||| | ||||||||||||||||||||| ||||||||| |||||||
Sbjct 177 GCAAATACTCTCAGGCTAGCCCGCAGGAAAACATTAATCTCTTTATTACGAAACTGCAAG 236
Query 121 AACATTGCCCATGTTCCATCGATTCACGCCAAGATCATTAGGACCTTCCATGACCAAGAT 180
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 AACAATGCCCAAGTTCCATCGATTCACGCCAAGATCATTAGGACCTTCCATGACCAAGAT 296
Query 181 GCTTTCGTTGTTTTCGAACTTATCCGTGTTTGCTCCACTCTCGATTCCGTCGACTACGCC 240
||||||||||||||||| ||||||||||| ||||||||||| |||||| ||||||||||
Sbjct 297 GCTTTCGTTGTTTTCGAGCTTATCCGTGTCTGCTCCACTCTTGATTCCATCGACTACGCT 356
Query 241 TACGACGTGTTTAGTTACGTATCTAACCCTAATGTATATCTATACACTGCTATGATCGAT 300
|||||||||||| |||| ||||| ||||||||||| ||||| ||||| || |||||||||
Sbjct 357 TACGACGTGTTTCGTTATGTATCGAACCCTAATGTGTATCTGTACACCGCCATGATCGAT 416
Query 301 GGTTTTGTGTCATCTGGTCGTTCTGCTGATGGAGTTTCGCTGTATCATCGGATGATTCAC 360
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 417 GGTTTTGTGTCATCTGGTCGCTCCGCTGATGGAGTTTCGCTGTATCATCGGATGATTCAC 476
Query 361 AATTCGGTTTTGCCTGATAACTACGTGATCACCTCAGTTTTGAAAGCTTGTGATTTGAAG 420
| |||||||||||||||||| |||||||||||||| |||||||||||||||| |||| |
Sbjct 477 AGTTCGGTTTTGCCTGATAATTACGTGATCACCTCCGTTTTGAAAGCTTGTGGTTTGGAT 536
Query 421 GTATGTAGAGAGATTCATGCCCAGGTTTTGAAACTAGGGTTCGGGTCTAGTAGATCGGTA 480
| |||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||
Sbjct 537 GAATGTAGAGAGATTCATTCCCAGGTTTTGAAACTTGGGTTCGGGTCTAGCAGATCGGTG 596
Query 481 GGGCTAAAAATGATGGAAATCTACGGGAAATCTGGGGAATTGG-TGAATGCTAAGAAGAT 539
||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||| |
Sbjct 597 GGGCTAAAACTGATGGAAATCTACGGGAAATCTGGGGAATTGGCTGA-TGCTAAGAAGGT 655
Query 540 GTTCGATGAAATGCCTGACAGAGATCATGTTGCAGCAACGGTCATGATTAATTGTTATTC 599
||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||
Sbjct 656 GTTCGATGAAATGCCTGACAGAGATCAGGTTGTAGCAACAGTCATGATTAATTGTTATTC 715
Query 600 TGAATGCGGTT-TCATTAAGGAGGCGTTAGAGCTTTTTCAAGATGTTAAGATTAAAGATA 658
|||||| |||| | ||||||||||| |||||||| ||||||||||||||||| |||||||
Sbjct 716 TGAATGTGGTTGT-ATTAAGGAGGCATTAGAGCTGTTTCAAGATGTTAAGATCAAAGATA 774
Query 659 CGGTTTGTTGGACTGCGATGATTGATGGGTTGGTTAGAAACAAGGAGATGAACAAAGCGT 718
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
Sbjct 775 CGGTTTGTTGGACTGCGATGATTGATGGTTTGGTTAGAAACAGGGAGATGAACAAAGCAT 834
Query 719 TGGAGCTTTTTAGGGAAATGCAG 741
|||||||||||||||||||||||
Sbjct 835 TGGAGCTTTTTAGGGAAATGCAG 857
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61287204205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5