BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59210.1
Length=1547
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950645 jgi|Araly1|950645|scaffold_802532.1 2180 0.0
Ahg952255 jgi|Araly1|952255|scaffold_4800011.1 1033 0.0
> Ahg950645 jgi|Araly1|950645|scaffold_802532.1
Length=1353
Score = 2180 bits (1180), Expect = 0.0
Identities = 1294/1349 (96%), Gaps = 7/1349 (1%)
Strand=Plus/Plus
Query 31 GGAGAGGAATCATACCATGGAATCGCACCACGCGTCTCTAGGTCGCCGTACTTTGGAAGA 90
||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 6 GGA-AGGAATCATACCATGGACTCGCACCACGCGTCTCTAGGTCGCCGGACTTTGGAAGA 64
Query 91 GATTCGTCAAAAGAGAGCAGCTCAAAGGCTAAGCAAAGCTTCTTCAGGTCCAGATCTTAG 150
|||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||
Sbjct 65 GATTCGTCAAAAGAGAGCTGCTCAAAGGCTAAGCAAAACTTCTTCAGGCCCAGATCTTAG 124
Query 151 TGAAATTCCCAATCCTGCCGATTTCCCAGTGATCAGAAAATCTGAGAGCGGAAATCGACT 210
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 125 CGAAATTCCAAATCCTGCCGATTTCCCAGTGATCAGAAAATCTGAGAGTGGAAATCGGCT 184
Query 211 TTCTGAGACAGATGTTGGTGCTTTATATTCCCAGCTTAAAGAACTGCAGAAGAAGAATGC 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 TTCTGAGACAGATGTTGGTGCTTTATATTCCCAGCTTAAAGAACTGCAGAAGAAGAATGC 244
Query 271 AGAAATGGAGGAGCGCAACAAAATTTTGTCTTCAAAGCTTCAAACGAAGGAAGTTGAGAA 330
||| ||||||||||||||||| || ||||| |||||||||||||| ||||||||||||||
Sbjct 245 AGATATGGAGGAGCGCAACAAGATATTGTCCTCAAAGCTTCAAACAAAGGAAGTTGAGAA 304
Query 331 TGAATCACTTGAGACTCGGTTGAATGTGCTGGAACAAAACACAGTGCCATCTCTGAGAAA 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 TGAATCACTTGAGACTCGGTTGAATGTGCTGGAACAAAACACAGTGCCATCTCTGAGAAA 364
Query 391 AGCCCTCAAGGAAATTGCAATGGAGAAAGATGCTGCTGTTGTTTTACGAGAGGATCTCTC 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 AGCCCTCAAGGAAATTGCAATGGAGAAAGATGCTGCTGTTGTTTTACGAGAGGATCTCTC 424
Query 451 AGCTCAAGTTAGGACTCTTAAGAGACGTGTTAATCAGGCAGAGGAGGAACAATATCGAGC 510
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 425 AGCTCAAGTTAGGACTCTTAAGAGACGTGTTAAAGAGGCAGAGGAGGAACAATATCGAGC 484
Query 511 TGAGGAAGATGCAGCATCTCTTAGAGCAGAGCTTAATTCGATACAACAGCAAGCAATGGG 570
|||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 485 TGAGGAAGATGCGGCATCTCTGAGAGCAGAGCTTAACTCGATACAACAGCAAGCAATGGG 544
Query 571 TAATTCATTTGCTGGCATGTCGCCAATGGGAGTTTCCCCAGACCAACTACCAATATTAGA 630
|| ||| ||| ||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 545 TACTTCGTTTACTGGCCTGTCGCCAATGGGAGTTTCCTCAGACCAACTACCAATATTAGA 604
Query 631 AAAGGAGATGGCTAACCTAAAACTAGAATTACAGAAAGAATCAGTGTTGAGGCAGCAAGA 690
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 605 AAAGGAGATGGCTAACCTAAAACTAGAATTACAGAAAGAATCAGTGTTAAGGCAGCAAGA 664
Query 691 ACAACATCGTTTAGCTGAAGAACAAACTCGAGTAGCTTCTTTAATGTCTGAAAAGCAGGA 750
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 ACAACAGCGTTTAGCTGAAGAACAAACTCGAGTAGCTTCTTTAATGTCTGAAAAGCAGGA 724
Query 751 ACTGGAACAGAAAATTTCAGTTTTATCCAGCAGGGCCTCAGAAGTATCAGAGTCTGGTCA 810
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 725 ACTGGAACAGAAGATTTCAGTTTTATCTAGCAGGGCCTCAGAAGTATCAGAGTCTGGTCA 784
Query 811 AAAAGTATTTTCAGTGGAAGATAAAGAAAAACTCGAGAAGCAGTTGCATGATATGGCTGT 870
||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 AAAGGCATTGTCAGTGGAAGATAAAGAAAAACTCGAGAAGCAGTTGCATGATATGGCTGT 844
Query 871 TGCACTTGAAAGATTAGAGAGTAGTAGGCAAAAACTTCTCATGGAAATTGACAACCAATC 930
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 845 TGCACTTGAAAGATTAGAGAGTAGTAGGCAAAAACTTCTCATGGAGATTGACAACCAATC 904
Query 931 ATCTGAAATAGAGAAGCTATTTGAGGAAAACTCGAACCTCTCAGCTTCGTATCAAGAATC 990
|||||||||||||| ||| |||||||| |||||||||||||| ||||| |||||||||||
Sbjct 905 ATCTGAAATAGAGAGGCTTTTTGAGGAGAACTCGAACCTCTCGGCTTCATATCAAGAATC 964
Query 991 AATCAACATATCAAATCAGTGGGAGAATCAAGTGAAAGAATGTCTGAAGCAAAACGTAGA 1050
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 AATCAACGTATCAAATCAGTGGGAGAATCAAGTGAAAGAATGTCTGAAGCAAAACGTAGA 1024
Query 1051 ACTCCGTGAAGTTCTGGACAAGTTGAGAACAGAACAAGCTGGTTCTTTTTCACGAGGGCC 1110
|||||||||||||||||||||||| |||||||||||||||||| || |||||||| | |
Sbjct 1025 ACTCCGTGAAGTTCTGGACAAGTTAAGAACAGAACAAGCTGGTGCTCTTTCACGAAAGTC 1084
Query 1111 TTCAGAATTTGAGGCAAATGGGTCGCA-T-G---G-AACTGATACTCTATCCCTCAAGGG 1164
||||||| ||||||||||||||||||| | | | |||||| |||||||||||||||||
Sbjct 1085 TTCAGAAATTGAGGCAAATGGGTCGCACTCGCATGGAACTGAAACTCTATCCCTCAAGGG 1144
Query 1165 TGAACTTGCGAAAGAACAGAGCAGAGCGGAATCATTATCTGCTCAAGTCCTCCAACTCTC 1224
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1145 TGAACTTGCGAAAGAACAGAGCAGAGCGGAATCATTATCTGCTCAAGTTCTCCAACTCTC 1204
Query 1225 AGCTCAACTCCAGCAAGCAACACAAGCATACAATGGGCTTATGCGCATCTATAAACCTGT 1284
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1205 AGCTCAACTCCAGCAAGCAACACAAGCATACAATGGGCTTATGCGCGTCTATAAACCTGT 1264
Query 1285 GCTTAGAAACATAGAGAGTAGCTTAATCAAGCTGAAGCAAGATGGATCGGTTACAGTGGC 1344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1265 GCTTAGAAACATAGAGAGTAGCTTAATCAAGCTGAAGCAAGATGGATCGGTTACAGTGGC 1324
Query 1345 ACAGTGAATCAGGAACCAAGGGCACACTT 1373
|||||||||||||||||||||||||||||
Sbjct 1325 ACAGTGAATCAGGAACCAAGGGCACACTT 1353
> Ahg952255 jgi|Araly1|952255|scaffold_4800011.1
Length=683
Score = 1033 bits (559), Expect = 0.0
Identities = 609/634 (96%), Gaps = 0/634 (0%)
Strand=Plus/Plus
Query 390 AAGCCCTCAAGGAAATTGCAATGGAGAAAGATGCTGCTGTTGTTTTACGAGAGGATCTCT 449
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAGCCCTTAAGGAAATTGCAATGGAGAAAGATGCTGCTGTTGTTTTACGAGAGGATCTCT 60
Query 450 CAGCTCAAGTTAGGACTCTTAAGAGACGTGTTAATCAGGCAGAGGAGGAACAATATCGAG 509
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 CAGCTCAAGTTAGGACTCTTAAGAGACGTGTTAAAGAGGCAGAGGAGGAACAATATCGAG 120
Query 510 CTGAGGAAGATGCAGCATCTCTTAGAGCAGAGCTTAATTCGATACAACAGCAAGCAATGG 569
||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 121 CTGAGGAAGATGCGGCATCTCTGAGAGCAGAGCTTAACTCGATACAACAGCAAGCAATGG 180
Query 570 GTAATTCATTTGCTGGCATGTCGCCAATGGGAGTTTCCCCAGACCAACTACCAATATTAG 629
||| ||| ||| ||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 GTACTTCGTTTACTGGCCTGTCGCCAATGGGAGTTTCCTCAGACCAACTACCAATATTAG 240
Query 630 AAAAGGAGATGGCTAACCTAAAACTAGAATTACAGAAAGAATCAGTGTTGAGGCAGCAAG 689
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 241 AAAAGGAGATGGCTAACCTAAAACTAGAATTACAGAAAGAATCAGTGTTAAGGCAGCAAG 300
Query 690 AACAACATCGTTTAGCTGAAGAACAAACTCGAGTAGCTTCTTTAATGTCTGAAAAGCAGG 749
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AACAACAGCGTTTAGCTGAAGAACAAACTCGAGTAGCTTCTTTAATGTCTGAAAAGCAGG 360
Query 750 AACTGGAACAGAAAATTTCAGTTTTATCCAGCAGGGCCTCAGAAGTATCAGAGTCTGGTC 809
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 361 AACTGGAACAGAAGATTTCAGTTTTATCTAGCAGGGCCTCAGAAGTATCAGAGTCTGGTC 420
Query 810 AAAAAGTATTTTCAGTGGAAGATAAAGAAAAACTCGAGAAGCAGTTGCATGATATGGCTG 869
|||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAAAGGCATTGTCAGTGGAAGATAAAGAAAAACTCGAGAAGCAGTTGCATGATATGGCTG 480
Query 870 TTGCACTTGAAAGATTAGAGAGTAGTAGGCAAAAACTTCTCATGGAAATTGACAACCAAT 929
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 481 TTGCACTTGAAAGATTAGAGAGTAGTAGGCAAAAACTTCTCATGGAGATTGACAACCAAT 540
Query 930 CATCTGAAATAGAGAAGCTATTTGAGGAAAACTCGAACCTCTCAGCTTCGTATCAAGAAT 989
||||||||||||||| ||| |||||||| |||||||||||||| ||||| ||||||||||
Sbjct 541 CATCTGAAATAGAGAGGCTTTTTGAGGAGAACTCGAACCTCTCGGCTTCATATCAAGAAT 600
Query 990 CAATCAACATATCAAATCAGTGGGAGAATCAAGT 1023
|||||||| |||||||||||||||||||||||||
Sbjct 601 CAATCAACGTATCAAATCAGTGGGAGAATCAAGT 634
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57935262645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5