BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G59230.1

Length=561
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg496033 jgi|Araly1|496033|fgenesh2_kg.8__1849__AT5G59230.1         726    0.0  


> Ahg496033 jgi|Araly1|496033|fgenesh2_kg.8__1849__AT5G59230.1
Length=555

 Score =  726 bits (393),  Expect = 0.0
 Identities = 511/566 (90%), Gaps = 16/566 (3%)
 Strand=Plus/Plus

Query  1    ATGGTGTTATCAACGAGCGATACGAGTAGCTCTTACAACTATGTTATCGATGACGTTATC  60
            ||||||||||| || ||||| || || | ||||||||||||||| |||||||||||||||
Sbjct  1    ATGGTGTTATCGACTAGCGACACTAGCACCTCTTACAACTATGTCATCGATGACGTTATC  60

Query  61   AACAAGTCTCGATGCGATCTTGTCTACAATGGAGAACTTGATGAGAGTGTTCTTAGCCAA  120
            ||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||| 
Sbjct  61   AACAAGTCTCGATGCGAGCTCGTCTACAATGGAGAACTTGAAGAGAGTGTTCTTAGCCAG  120

Query  121  ATTCAATCGATGTGGAAAACGAAGATGATACAAGCAGGAGCCATGAGCGGAACAATCGAA  180
            ||||||||| ||||||||||||||||||||||||| |||| ||| | |||||||||||||
Sbjct  121  ATTCAATCGGTGTGGAAAACGAAGATGATACAAGCCGGAGTCATAACCGGAACAATCGAA  180

Query  181  ACATCTTCTGCTT-CGATTCCCACCACACCTGTGATAGTGCAGACGACTCTTCAGACTCC  239
            |||||| ||| || ||||| || | || | |  |||| ||||| ||||||||||||||||
Sbjct  181  ACATCTGCTG-TTGCGATTTCCGC-AC-C-TCCGATATTGCAGGCGACTCTTCAGACTCC  236

Query  240  G-G--ATGCAATTCCTTTACCTGAGAAGAAGATGTCTCC-AAAGAAAGAGAGTGATGGAT  295
            | |  ||||||||||||||||||||||||   |||| |  |||||||||| |||| | ||
Sbjct  237  GCGGGATGCAATTCCTTTACCTGAGAAGA---TGTC-CATAAAGAAAGAGTGTGACGAAT  292

Query  296  TTTATTATATTCCTCAGCAAGATGGAGCGAGAGATGAAGCTATTGTCGATGTagatgaga  355
            ||||| || | ||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct  293  TTTAT-AT-T-CCTCAGCAAGATGGAGCTAGAGATGAAGCTATGGTCGATGTAGATGAGA  349

Query  356  atgaagagcctttgaacgaggatgatgatgatgaggaagatgatatcgatgatgatgata  415
            ||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct  350  ATGAAGAGCTTTTGAACGAGGACGATGATGATGAGGAAGATGATATGGATGATGATGATA  409

Query  416  tgaACATTCAACATTTGGTCATGTGTCAATTTGATAAGGTGAAGCGTTCCAAGAACAAGT  475
             |||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct  410  CGAACATTCCACATTTGGTCATGTGTCAATTTGACAAGGTGAAGCGTTGCAAGAACAAGT  469

Query  476  GGGAGTGCAAATTCAATGCGGGTGTTATGCAAATAAACGGCAAAAATGTTCTTTTCTCAC  535
            |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct  470  GGGAGTGCAAATTCAATGCGGGAGTTATGCAGATAAACGGCAAAAATGTTCTTTTCTCAC  529

Query  536  AGGCAACAGGAGATTTCAACTTCTAG  561
            |||| |||||||||||||||||||||
Sbjct  530  AGGCCACAGGAGATTTCAACTTCTAG  555



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20489551293


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5