BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59240.1
Length=857
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496032 jgi|Araly1|496032|fgenesh2_kg.8__1848__AT5G59240.1 1203 0.0
> Ahg496032 jgi|Araly1|496032|fgenesh2_kg.8__1848__AT5G59240.1
Length=802
Score = 1203 bits (651), Expect = 0.0
Identities = 771/825 (93%), Gaps = 24/825 (3%)
Strand=Plus/Plus
Query 9 TTAAACCTCTAAAGCTCGTGAGAACCAAAAGCTTGAATCAAACGCTTTTGAAATCATGGG 68
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 TTAAACCTCTGAAGCTCGTGAGAACAAAAAGCTTGAATCAAACGCTTTTGAAATCATGGG 60
Query 69 TATCTCTCGTGATTCAATTCACAAGAGACGTGCCACTGGTGGTAAGCAAAAAATGTGGAG 128
||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||
Sbjct 61 TATCTCTCGTGATTCAATTCACAAGAGACGTGCCACTGGTGGTCAGCAGAAGATGTGGAG 120
Query 129 GAAGAAGCGAAAGTATGAGCTTGGAAGACAACCAGCTAACACTAAGCTGTCAAGTAACAA 188
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAAGAAGAGAAAGTATGAGCTTGGAAGACAACCAGCTAACACTAAGCTGTCAAGTAACAA 180
Query 189 GACGGTGAGGAGGATCCGTGTGCGTGGTGGGAATGTAAAGTGGCGAGCTTTGAGGCTCGA 248
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GACAGTGAGGAGGATCCGTGTGCGTGGTGGGAATGTAAAGTGGCGAGCTTTGAGGCTCGA 240
Query 249 TACTGGAAACTTCTCGTGGGGAAGTGAAGCTGTGACCCGCAAGACTAGGATCTTGGATGT 308
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 241 TACTGGAAACTTCTCGTGGGGAAGCGAAGCTGTGACCCGTAAGACTAGGATCTTGGATGT 300
Query 309 GGCGTACAATGCATCAAACAATGAGCTTGTTCGTACACAAACTCTTGTGAAGAGTGCTAT 368
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGCTTACAATGCATCAAACAATGAGCTTGTTCGTACACAAACTCTTGTGAAGAGTGCTAT 360
Query 369 TGTTCAAGTTGATGCTGCTCCATTCAAGCAAGGGTATCTCCAACACTATGGAGTTGATAT 428
||||| ||||||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 361 TGTTCTAGTTGATGCTGCTCCGTTTAAACAAGGGTATCTCCAACACTATGGAGTTGATAT 420
Query 429 TGGTCGCAAGAAGAAAGGAGAGGCCGTTACCACTGAGGAAGTGAAGAAGAGCAATCATGT 488
||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 421 TGGTCGCAAGAAGAAAGGAGATGCAGTAACCACTGAGGAAGTGAAGAAGAGCAATCATGT 480
Query 489 TCAAAGGAAGCTGGAGATGCGACAAGAAGGCAGAGCACTTGACTCGCACCTTGAAGAGCA 548
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 481 TCAAAGGAAGCTGGAGATGCGACAAGAAGGCCGAGCACTTGACTCGCACCTTGAAGAGCA 540
Query 549 GTTTAGCAGTGGAAGGTTACTTGCATGTATCGCATCAAGACCCGGACAATGTGGTCGTGC 608
|||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||
Sbjct 541 GTTTAGCAGTGGAAGGTTGCTTGCATGTATCGCATCAAGACCCGGACAAAGTGGCCGTGC 600
Query 609 TGATGGGTACATATTAGAAGGTAAAGAGCTCGAATTCTACATGAAGAAACTTCAAAAGAA 668
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 601 TGATGGGTACATATTGGAAGGAAAAGAGCTCGAATTCTACATGAAGAAACTTCAAAAGAA 660
Query 669 GAAGGGCAAGAATGCTGGTGCTGCATAAGATACAAAACTTTCGATTGGGATTTTACTTAC 728
|||||||||||||||||||||||||||||| ||||||| ||| ||| | | |
Sbjct 661 GAAGGGCAAGAATGCTGGTGCTGCATAAGAAACAAAAC-----ATT----TTTGA-T--C 708
Query 729 GTTTTTGATCTTGAAAATTTGAAAAGCTTTATTCATTCTTTTGTTGAGTT-AGAGTTTGC 787
|| ||| | || ||||||| ||||| |||||||||||||||| |||||||||
Sbjct 709 -TT---GATA--G----TT-GAAAAGCCTTATTTATTCTTTTGTTGAGTTTAGAGTTTGC 757
Query 788 ATTGAGAGATCTTCATGTTTATGGATTTTGATCATTTATAGTCAA 832
|||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 758 ATTGAGAGATCTTCATGTTTATGGATATTGATCATTTATAGTCAA 802
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31718266944
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5