BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59270.1
Length=2007
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917642 jgi|Araly1|917642|Al_scaffold_0008_2393 1685 0.0
Ahg937207 jgi|Araly1|937207|scaffold_501398.1 102 9e-21
> Ahg917642 jgi|Araly1|917642|Al_scaffold_0008_2393
Length=4092
Score = 1685 bits (912), Expect = 0.0
Identities = 1021/1075 (95%), Gaps = 2/1075 (0%)
Strand=Plus/Plus
Query 832 ccacctcccac-tccgccaacctcAAGGTCTAAAGACTCTAAGAATATTATTATCATATG 890
||||| ||| | |||||||||||| |||||||||||||||||||||||||| |||||| |
Sbjct 862 CCACCACCC-CTTCCGCCAACCTCGAGGTCTAAAGACTCTAAGAATATTATAATCATAAG 920
Query 891 TGTTACTGTAACATCAATTGCTTTTCTGTTGATGTTGGGGGGATTTTTGTATCTTTACaa 950
|||||||||||||||||||||||||||||||| ||||| ||| |||||||| |||||||
Sbjct 921 CGTTACTGTAACATCAATTGCTTTTCTGTTGATCTTGGGAGGAATTTTGTATTTTTACAA 980
Query 951 aaaaaaGAAGTATGCAGAGGTGCTTGAACATTGGGAAAATGAATACAGTCCCCAAAGGTA 1010
||| ||||||||||| |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 981 AAACAAGAAGTATGCGGAGGTGCTTGAACAATGGGAAAATGAATATAGTCCCCAAAGGTT 1040
Query 1011 CTCCTTTAGGAACCTCTACAAAGCAATAAGGGGTTTCAGGGAGAATCGGCTACTTGGGGC 1070
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1041 CTCCTTTAAGAACCTCTACAAAGCAACAAGGGGTTTCAGGGAGAATCGGCTACTTGGGGC 1100
Query 1071 AGGAGGTTTTGGAAAAGTCTATAAAGGAGAACTTCCTTCAGGTACACAGATTGCGGTTAA 1130
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1101 AGGAGGTTTTGGAAAAGTCTATAAAGGAGAACTTCCTTCAGGTACACAAATTGCGGTTAA 1160
Query 1131 GAGAGTCTACCATAATGCAGAACAAGGGATGAAACAGTATGCCGCAGAGATTGCTAGTAT 1190
||||||||| ||| ||||||||||||| |||| |||||||| ||||||||||||||||||
Sbjct 1161 GAGAGTCTATCATGATGCAGAACAAGGAATGACACAGTATGTCGCAGAGATTGCTAGTAT 1220
Query 1191 GGGAAGGTTAAGGCACAAGAACTTAGTGCAGCTTCTTGGTTACTGCAGAAGGAAAGGTGA 1250
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1221 GGGAAGGCTAAGGCACAAGAACTTGGTGCAGCTTCTTGGTTACTGCAGAAGGAAAGGTGA 1280
Query 1251 ATTGCTTTTGGTTTATGACTACATGCCAAATGGAAGCCTTGATGACTACTTGTTCAATAA 1310
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1281 ATTGCTTTTGGTATATGACTACATGCCAAACGGAAGCCTTGATGACTACTTGTTCAATAG 1340
Query 1311 AAACAAGCTGAAAGATCTTACTTGGTCTCAGAGAGTAAATATAATCAAGGGAGTAGCCTC 1370
||||||||| || || || | ||||||||||||| | |||||||||||||||||||||||
Sbjct 1341 AAACAAGCTCAAGGACCTCAGTTGGTCTCAGAGACTGAATATAATCAAGGGAGTAGCCTC 1400
Query 1371 TGCCCTTCTGTATCTTCATGAAGAATGGGAACAAGTTGTACTACATCGAGATATTAAAGC 1430
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1401 TGCCCTTCTGTATCTTCATGAAGAATGGGAACAAGTTGTACTACATCGAGATATAAAAGC 1460
Query 1431 TAGCAACATTCTTTTAGATGCGGATCTAAATGGAAGGTTGGGAGATTTCGGGCTTGCAAG 1490
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1461 TAGCAACATTCTTTTAGATGCGGATCTAAATGGAAGGTTGGGAGATTTTGGGCTTGCAAG 1520
Query 1491 ATTCCATGATCGTGGCGAGAATCTTCAAGCAACGCGTGTGGTAGGAACCATTGGCTACAT 1550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1521 ATTCCATGATCGTGGCGAGAATCTTCAAGCAACGCGTGTGGTAGGAACCATTGGCTACAT 1580
Query 1551 GGCACCAGAGCTTACAGCAATGGGAGTGGCCACTACTAAAACCGATATCTATGCTTTTGG 1610
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1581 GGCACCAGAGCTTACAGCAATGGGAGTGGCCACTACTAAAACTGATGTCTATGCTTTTGG 1640
Query 1611 ATCTTTCATCCTTGAGGTGGTTTGCGGGAGAAGGCCTGTAGAACCTGATAGACCACCTGA 1670
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1641 ATCTTTCATCCTTGAGGTGGTTTGCGGGAGAAGGCCAGTAGAACCTGATAGACCACCTGA 1700
Query 1671 GCAAATGCATTTACTTAAGTGGGTTGCCACTTGTGGGAAAAGAGATACTTTGATGGATGT 1730
||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1701 GCAGATGCTTTTACTTAAGTGGGTTGCCACTTGTGGGAGAAGAGATACTTTGATGGATAT 1760
Query 1731 TGTTGACAGTAAACTAGGAGACTTTAAAGCTAAGGAAGCCAAGCTGCTTCTGAAGCTAGG 1790
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1761 TGTTGACAGTAAACTAGGAGACTTTAAAGCTGAGGAAGCCAAGCTGCTTCTAAAGCTAGG 1820
Query 1791 CATGCTTTGTTCACAGAGTAACCCGGAAAGTAGACCTAGTATGAGGCACATCATACAATA 1850
||||||||||||||||||||||||||||||||||||||||||||| || | ||| ||||
Sbjct 1821 TATGCTTTGTTCACAGAGTAACCCGGAAAGTAGACCTAGTATGAGGGACGTAATAAAATA 1880
Query 1851 TCTGGAAGGAAATGCCACTATTCCAAGCATATCATTTGATACAGCAGGGTTTGGT 1905
||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1881 TCTGGAAGGAAATGCCACTATTCCAAGCATATCATTTGATACAGCTGGATTTGGT 1935
Score = 1168 bits (632), Expect = 0.0
Identities = 1071/1278 (84%), Gaps = 49/1278 (4%)
Strand=Plus/Plus
Query 755 AAAGCCTTGAC-TTGTCAAAG-ATTTTGGAtcct-c-cta--atcgacctccaccaccat 808
||||||||||| || || ||| |||| ||||||| | | | ||| |||| ||||||
Sbjct 2831 AAAGCCTTGACATT-TC-AAGAATTTCGGATCCTCCACCACCATC-TTCTCCGCCACCAA 2887
Query 809 cctctccaccaccacctcctccgccacctcccactccgccaacc-tcAAGGTCTA--AAG 865
|||||||||||| | || |||| ||||| ||| |||| || ||| || |||| |||
Sbjct 2888 CCTCTCCACCACAATCTTCTCCACCACCACCCTCTCCTCC-ACCATC-TTCTCTATCAAG 2945
Query 866 ACT-CTAAGAAT-ATTATTA-TCA-TATGTGTTACTGTAACATCAATTG---CTTTTCTG 918
||| | | | | ||| || || ||| | ||| | || || |||||| ||||||
Sbjct 2946 ACTGCCATTAGTGATT-CTAGGCACTAT-TATTATTATACCAACAATTGTTTTTTTTCTA 3003
Query 919 TTGATGTTGGGGGGATTTTTGTATCTTTACaaaaaaaaGAAGTATGCAGAGGTGCTTGAA 978
| || ||||| ||| |||||||||| ||||| ||||||||||| || ||||||||||||
Sbjct 3004 ATAATATTGGGAGGAATTTTGTATCTGTACAAGAAAAAGAAGTACGCGGAGGTGCTTGAA 3063
Query 979 CATTGGGAAAATGAATACAGTCCCCAAAGGTACTCCTTTAGGAACCTCTACAAAGCAA-T 1037
|| |||||||| ||||| | ||||||||||||||||||||||||||| ||||||||||
Sbjct 3064 CAATGGGAAAAGGAATATAATCCCCAAAGGTACTCCTTTAGGAACCTGTACAAAGCAACC 3123
Query 1038 AAGGGGTTTCAGGGAGAATCGGCTACTTGGGGCAGGAGGTTTTGGAAAAGTCTATAAAGG 1097
|| |||||||||||||||| ||| ||||| |||||||| ||||||||||||||||||||
Sbjct 3124 AA-AGGTTTCAGGGAGAATCAGCTGCTTGGAGCAGGAGGGTTTGGAAAAGTCTATAAAGG 3182
Query 1098 AGA-ACTTCCTTCA--GGTACACAGATTGCGGTTAAGAGAGTCTACCATAATGCAGAACA 1154
| | |||||| || |||||||| || || ||||||| |||||||||| ||||||||||
Sbjct 3183 A-ATACTTCC--CAGTGGTACACAAATCGCAGTTAAGAAAGTCTACCATGATGCAGAACA 3239
Query 1155 AGGGATGAAACAGTATGCCGCAGAGATTGCTAGTATGGGAAGGTTAAGGCACAAGAACTT 1214
||| ||||||||||||| |||||||| ||||||||||||||| |||||||||| |||||
Sbjct 3240 AGGAATGAAACAGTATGTGGCAGAGATAGCTAGTATGGGAAGGCTAAGGCACAAAAACTT 3299
Query 1215 AGTGCAGCTTCTTGGTTACTGCAGAAGGAAAGGTGAATTGCTTTTGGTTTATGACTACAT 1274
|||||||| |||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 3300 GGTGCAGCTCCTTGGTTACTGCAGAAGGAAAGGTGAATTGCTCTTGGTCTATGATTACAT 3359
Query 1275 GCCAAATGGAAGCCTTGATGACTACTTGTTCAATAAAAACAAGCTGAAAGATCTTACTTG 1334
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 3360 GCCAAATGGAAGCCTTGATGACTACTTGTTCAATAAAAACAAGCTGAAAGACCTCACTTG 3419
Query 1335 GTCTCAGAGAGTAAATATAATCAAGGGAGTAGCCTCTGCCCTTCTGTATCTTCATGAAGA 1394
||| |||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||
Sbjct 3420 GTCACAGAGAGTAAATATAATCAAGGGAGTTGCATCTGCCCTTCTATATCTGCATGAAGA 3479
Query 1395 ATGGGAACAAGTTGTACTACATCGAGATATTAAAGCTAGCAACATTCTTTTAGATGCGGA 1454
|||||||||||||| ||||| ||||||| ||||| |||||||||||||||||||| ||
Sbjct 3480 GTGGGAACAAGTTGTGTTACATAGAGATATAAAAGCCAGCAACATTCTTTTAGATGCTGA 3539
Query 1455 TCTAAATGGAAGGTTGGGAGA-TTTCGGGCTT-GCAAGATTCCATGATCGTGGCGAGAAT 1512
||||||||||| ||||||||| ||| ||| || || |||||||| |||||||| | |||
Sbjct 3540 TCTAAATGGAAAGTTGGGAGACTTT-GGG-TTAGCCAGATTCCACGATCGTGGTGTCAAT 3597
Query 1513 CTTCAAGCAACGCGTGTGGTAGGAACCATTGGCTACATGGCACCAGAGCTTACAGCAATG 1572
||| |||| || || ||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 3598 CTTGAAGCCACACGAGTGGTAGGAACCATTGGTTACATGGCACCAGAGCTTACTGCAATG 3657
Query 1573 GGAGTGGCCACTACTAAAACCGATATCTATGCTTTTGGATCTTTCATCCTTGAGGTGGTT 1632
||||| |||||||| ||||| |||||||||||||| |||| |||||||| || ||
Sbjct 3658 GGAGTAACCACTACTTGGACCGACGTCTATGCTTTTGGAGCTTTTATCCTTGAAGTTGTA 3717
Query 1633 TGCGGGAGAAGGCCTGTAGAACCTGATAG-ACCACCTGAGCAAATGCATTTAC-TTAAGT 1690
|| ||||| ||||| ||||| |||||| | ||||| |||||||||| |||| ||||||
Sbjct 3718 TGTGGGAGGAGGCCAGTAGACCCTGAT-GCACCACGTGAGCAAATG-ATTTTGGTTAAGT 3775
Query 1691 GGGTTGCCA-CTTGTGGGAAAAGAGATACTTTGA-TGGATGTTGTTGACAGTAAACTAGG 1748
||||||| | || | |||| ||||||| |||| | || || ||||||||| ||||||
Sbjct 3776 GGGTTGCGAGCT-GCGGGAGAAGAGATGCTTTAACTG-ATACTGTTGACAGCAAACTAAT 3833
Query 1749 AGACTTTAAAGCTAAGGAAGCCAAGCTGCTTCTGAAGCTAGGCATGCTTTGTTCACAGAG 1808
|| || | ||| | ||| |||||||||||| |||||||||||||||| |||||||||||
Sbjct 3834 AGGCTATGAAGTTGGGGAGGCCAAGCTGCTTTTGAAGCTAGGCATGCTCTGTTCACAGAG 3893
Query 1809 TAACCCGGAAAGTAGACCTAGTATGAGGCACATCAT-ACAATATCTGGAAGGAAATGCCA 1867
||||| |||| ||||| |||||||| || || || |||||||||||||||||||| |
Sbjct 3894 CAACCCAGAAAACAGACCCAGTATGAGACAGAT-ATTACAATATCTGGAAGGAAATGTAA 3952
Query 1868 CTATTCCAAGC-ATATCATTTGATACAGCAGGGTTTGGTATTCCCAATATAAGCAATGAA 1926
| ||||| || |||||||||||||| | | ||||||| |||||||||||| |||||
Sbjct 3953 GTGTTCCA-GCTATATCATTTGATACTGTTGCACTTGGTATACCCAATATAAGCCATGAA 4011
Query 1927 AC-GATAACACAGATGACAGCCACCTCCTCATCGGCCAATTTCTCTTTTGAAGATGTTAC 1985
|| | |||||||||||||| | ||||| ||||| || |||||||| ||||| ||||||||
Sbjct 4012 ACAG-TAACACAGATGACAACAACCTCTTCATCAGCTAATTTCTCATTTGAGGATGTTAC 4070
Query 1986 AATACTATTTGGCGGTCG 2003
| | |||||||| |||||
Sbjct 4071 AGTCCTATTTGGTGGTCG 4088
Score = 601 bits (325), Expect = 7e-171
Identities = 607/739 (82%), Gaps = 36/739 (5%)
Strand=Plus/Plus
Query 28 TTCTGGATGATAATATGTGTCCAGGTGTTGTCTTTGGTGCTAGCTCAAGACCGGGATGAA 87
|||||||| ||||| ||| |||| ||| ||||||||||||||||||| || ||||| |
Sbjct 25 TTCTGGATAATAATTTGTATCCATGTGGTGTCTTTGGTGCTAGCTCAGGATAGGGATCAG 84
Query 88 TTTGTGTACCATGACTTCAGTCAAGCAGACCTGCATCTTGACGGCATGGCAAGTATCGAT 147
||| || || | ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 85 TTTCTGCACTACAACTTCAGTCAAGCAGACCTGCATCTTGACGGCATGGCAAATATCGAT 144
Query 148 GATGGCCGATTGCATCTTACAAATAATACAACTAAGAGCACCGGTCATGCTTTCTGGAAA 207
||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||
Sbjct 145 GATGGCCGATTGCATCTTACAAATAATACAACTAAGAGCACTGGTCATGCGTTCAACAAA 204
Query 208 ATTCCAATGAACTTCACAACATCACCTTCCAGTTCACTTTCTTTTTCGACAGAGTTTGTC 267
| || ||| | |||||| | ||| | | ||| |||| | | ||||| ||||||
Sbjct 205 ACCCCTATGCAGTTCACAGCGTCA--T-C---TTC-CTTT-T----CAACAGAATTTGTC 252
Query 268 TTCGCAATCTTTCCATTGCTAGGTGACGGTCAAGGAATGGCGTTT-GTGGTAGCTCCTTT 326
|| ||||| || ||||||| ||| ||||||||||||||||| ||| || ||| |||||
Sbjct 253 TTTGCAATGTTGCCATTGCAAGGCGACGGTCAAGGAATGGC-TTTCGTAGTATCTCCTAC 311
Query 327 CATGGACATCAGGTATAGT-GGTGATGCAGCCTCATACTTAGG-ACTTTTCAATAGAAA- 383
|| ||| |||||||| | || | |||| | ||| | ||||| | ||||||||| |||
Sbjct 312 CAAAGACCTCAGGTAT-GCCGGCGCTGCAACTTCAGATTTAGGGA-TTTTCAATA-AAAC 368
Query 384 AAATGATAACAAAACAGAAAACCATATCCTGGCTGTAGAGCTTGATACTAATTCA-AGCC 442
||||||||||||||| ||||||||||| || ||| |||||||||| |||||| | |||
Sbjct 369 AAATGATAACAAAACTGAAAACCATATTCTTGCTATAGAGCTTGACACTAATG-ATAGCT 427
Query 443 CTGAAG-CAATTGA-AGATAGTGATAACCATGTGGGGATTGATATTAACAGTATCA-TCT 499
|||| | || |||| | | || | ||||||||||||||||||||| |||||||| | |||
Sbjct 428 CTGA-GTCATTTGACAAA-AGCGGTAACCATGTGGGGATTGATATAAACAGTAT-AGTCT 484
Query 500 CAGAAGACTCTGCCAATGCTAGTTACTTTAGCGGTACGGAGGGAAAGAACATAAG-CT-T 557
||| || | ||| || ||||||||||||| | ||| |||||||||| |||| || |
Sbjct 485 CAGTTGAATATGCGAACGCTAGTTACTTTAATGATACTCAGGGAAAGAATATAACTCTGT 544
Query 558 CCGGCTAGCTAGTGAAAAAAGTATTCTGGTATGGATAGATTATAATGGAACAGAGAAACT 617
| | || ||||||| |||||||||||| | |||||||||||| |||||| | |||||||
Sbjct 545 C-G-CTTGCTAGTGGTAAAAGTATTCTGATCTGGATAGATTATGATGGAATAAAGAAACT 602
Query 618 ACTAAATGTAACGGTAGCTCCAGTGCCAACTCCAAAACCAGCATT-GCCT-TACTTGTCA 675
||| ||||||||| |||||||||| ||||||||||| |||| || |||| | |||||||
Sbjct 603 ACTCAATGTAACGTTAGCTCCAGTACCAACTCCAAAGCCAG-ATAAGCCTCT-CTTGTCA 660
Query 676 AGCTCCATCAAACCAAGAAAGCCTCTCTTGTCAAGATTCATCAATATTTCAGAAATTTTC 735
|| |||||||||||||| ||| ||||||||||||| ||||||| ||||||||||||||
Sbjct 661 AGATCCATCAAACCAAGGGTGCCACTCTTGTCAAGATCCATCAATCTTTCAGAAATTTTC 720
Query 736 AATGGGACAATGTTTGTAG 754
|||| |||||||| |||||
Sbjct 721 AATGAGACAATGTATGTAG 739
> Ahg937207 jgi|Araly1|937207|scaffold_501398.1
Length=2053
Score = 102 bits (55), Expect = 9e-21
Identities = 186/247 (75%), Gaps = 18/247 (7%)
Strand=Plus/Plus
Query 1071 AGGAGGTTTTGGAAAAGTCTATAAAGGAGAACT-T-CCTT-C--AGGTACACAGATTGCG 1125
|||||||||||||||||| || ||| | ||||| | |||| | ||| ||| | || ||
Sbjct 1070 AGGAGGTTTTGGAAAAGTTTACAAA-G-GAACTCTGCCTTCCAAAGG-ACA-A-ATAGCA 1124
Query 1126 GTTAAGAGAGTCTACCATAATGCAGAACAAGGGATGAAACAGTATGCCGCAGAGATTGCT 1185
|| || ||||| | ||| ||||||| |||||||||| |||| || || || || | |
Sbjct 1125 GTGAAAAGAGTGTCCCACGATGCAGAGGAAGGGATGAAGCAGTTTGTGGCTGAAATCG-T 1183
Query 1186 -AGTATGGG-AAGGTTAAGGCACAAGAACT-TAG-TGCAGCTTCTTGGTTACTGCAGAAG 1241
|| ||||| || | || ||||||||| | | | | || |||| ||| || || |||||
Sbjct 1184 GAGCATGGGCAATCTGAA-GCACAAGAA-TATGGTTCCA-CTTCATGGGTATTGTAGAAG 1240
Query 1242 GAAAGGTGAATTGCTTTTGGTTTATGACTACATGCCAAATGGAAGCCTTGATGACTACTT 1301
|||||||| || ||| |||| | ||| |||||||| ||||| || ||||| | |||||
Sbjct 1241 AAAAGGTGAGTTACTTCTGGTATCTGAATACATGCCCAATGGTAGTCTTGACCAATACTT 1300
Query 1302 GTTCAAT 1308
||||||
Sbjct 1301 ATTCAAT 1307
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75456775345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5