BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59280.1
Length=999
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950670 jgi|Araly1|950670|scaffold_802557.1 1053 0.0
> Ahg950670 jgi|Araly1|950670|scaffold_802557.1
Length=1017
Score = 1053 bits (570), Expect = 0.0
Identities = 783/884 (89%), Gaps = 21/884 (2%)
Strand=Plus/Plus
Query 131 CGGAGATGGATATT-CAAAGGATTTTCAACTTCATGACTGGAAGTGAAGAT-T---T-G- 183
||| ||||||| || | | |||| |||||||| |||||| |||| |||||| | | |
Sbjct 120 CGGCGATGGAT-TTGCGATGGATGTTCAACTTTATGACTAGAAGCGAAGATGTGCCTCGT 178
Query 184 ---AAAGACGACATCTCAGTATTAGACACGGGAACGCTTATGTGGATGGCGTCTT-TAAT 239
||||| |||||||| ||||||||| |||||||||||||||||||||||| | |
Sbjct 179 TTCAAAGAATTGATCTCAGTGTTAGACACGAGAACGCTTATGTGGATGGCGTCTTCT-TT 237
Query 240 GACGTCTGACTGCGATTACTTCATGGTCATCACAACAAACAAGAACGGCTCCAAAACCCT 299
||||||||||| | ||||||||||||||||| ||| |||| || |||||||||||| | |
Sbjct 238 GACGTCTGACTCCAATTACTTCATGGTCATCGCAAGAAACCAGTACGGCTCCAAAAGCAT 297
Query 300 ACAGAAACTCATGGGAATGTCAGATGACATGGACGTCTTCTTCTTTGAGGCTATCATGCG 359
||||| ||||||||| |||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 298 ACAGAGACTCATGGGGATGTCAGATGACGTGGACGTCTTCTTCTTCGAGGCTATCATGCG 357
Query 360 CCTCTTCATCCATGTCATGACTGACAAGTACGCCTCCTACGTGACGATACAGGGGATGAG 419
|||||| || |||||||||| ||||||||||| ||||||||| | ||| |||| |||||
Sbjct 358 ACTCTTCCTCTATGTCATGACCGACAAGTACGCGTCCTACGTGGCAATAAAGGGAATGAG 417
Query 420 AGTTTTTCAACAGGACAAGAGAGAGTTGATGTATGATCAAATTCTTCGATACGCGTGTTT 479
|||||||||||||||||||||||||||||||||||| || ||||| | | ||||| |||
Sbjct 418 AGTTTTTCAACAGGACAAGAGAGAGTTGATGTATGAGCACATTCTCCAAAACGCG-CTTT 476
Query 480 -CCTGGCGGGTGACCAGTACGGTTGCATCGCGCTCAACGAAATCATAACCGACTTGGACG 538
||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 477 ACCTGGCGCGTGACCAACACGGTTGCATCGCCCTCAACGAAATCATAACCGACTTGGACG 536
Query 539 ATCCTTACTACAGAGACCAGCTCCTTGACATAGTCGCGAACAACGCTCTTTTGCTAAGCA 598
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 537 ATCCTTACTACAGAAACCAGCTCCTGGACATAGTCGCGAACAACGCTCTTTTGCTAAGCA 596
Query 599 ACGATGCTTATGGCAACTTTGTGGTCCAACACGTGCTTAAACTACGTGACTCCCGTTGCA 658
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 597 ACGATGCTTATGGGAACTTTGTGGTCCAACACGTGCTTAAACTACGTGACTTCCGCTGCA 656
Query 659 CGCGTAACATTGCTGATAAACTATGTGGCTACTGCGTCGAGCTCTCGTTTAAAAAGTATG 718
|||||||||| |||||||| ||||||||| |||||||||| |||||||||||||||||||
Sbjct 657 CGCGTAACATCGCTGATAATCTATGTGGCCACTGCGTCGAACTCTCGTTTAAAAAGTATG 716
Query 719 GAAGCTACATCGTGGAGCGGCTTTTGGAGGCGGGGGACGT-ACCAATGGCAAC-AGTGGT 776
|||||||||| ||||||||||||||||||| ||||||| | | ||||| ||| ||||||
Sbjct 717 GAAGCTACATTGTGGAGCGGCTTTTGGAGGTGGGGGAC-TCAGTAATGG-AACTAGTGGT 774
Query 777 TCTGGATCTGTTGGCGTGCAAGACAGAGATGTTGATAAGGTTGGCGAGGAGCGAGTACGG 836
| ||||||| ||||||||||||| |||||||||||| |||||||||||||| ||||||||
Sbjct 775 TATGGATCTTTTGGCGTGCAAGAGAGAGATGTTGATGAGGTTGGCGAGGAGTGAGTACGG 834
Query 837 GAATTTTGTGGTGTGCAAGGCACTGGAATTAACAAATGAGATCCTCACGGCTGATCTGTT 896
|||||| ||||||| ||| |||||||| ||||| || || || || ||||||||||||||
Sbjct 835 GAATTTCGTGGTGTACAACGCACTGGATTTAACGAAGGACATTCTTACGGCTGATCTGTT 894
Query 897 TTACGGTTTGGTGA-ATAGGCTCATGCCTTATCGCCATCTCTTGCATAGGTCTCCTCGAA 955
||| |||||||||| | || ||||||||||||||||||||||||| |||||||||| |||
Sbjct 895 TTATGGTTTGGTGAGAAAG-CTCATGCCTTATCGCCATCTCTTGCGTAGGTCTCCTGGAA 953
Query 956 GCAAGATTGCAACCATCTTGGACTCAATGAGTGTCCCAAACTAG 999
||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 954 GCAAGATTGCAGCCATCCTGGACTCAATGCCTGTCCCAAACTAG 997
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37131721158
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5