BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59290.2
Length=1358
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496056 jgi|Araly1|496056|fgenesh2_kg.8__1872__AT5G59290.1 1930 0.0
Ahg485016 jgi|Araly1|485016|fgenesh2_kg.5__1008__AT3G46440.1 1210 0.0
Ahg481790 jgi|Araly1|481790|fgenesh2_kg.4__850__AT2G28760.2 821 0.0
> Ahg496056 jgi|Araly1|496056|fgenesh2_kg.8__1872__AT5G59290.1
Length=1378
Score = 1930 bits (1045), Expect = 0.0
Identities = 1209/1284 (94%), Gaps = 28/1284 (2%)
Strand=Plus/Plus
Query 35 TCTCTCAAGCAATGGCAGCTACAAGTGAGAAACAGAACACCACAAAGCCTCCTCCTTCTC 94
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 120 TCTCTGAAGCAATGGCAGCTACAAGTGAGAAACAGAACAGCACAAAGCCTCCTCCTTCTC 179
Query 95 CTTCTCCTCTCCGCAATTCCAAGTTTTGTCAGCCCAATATGAGGATCTTGATCTCTGGAG 154
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 180 CTTCTCCTCTCCGCAATTCCAAGTTTTGTCAGTCCAATATGAGGATCTTGATCTCTGGAG 239
Query 155 GAGCTGGCTTCATTGGTTCTCACTTGGTTGATAAGCTTATGGAAAATGAGAAGAATGAGG 214
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GAGCTGGGTTCATTGGTTCTCACTTGGTTGATAAGCTTATGGAAAATGAGAAGAATGAGG 299
Query 215 TGGTTGTTGCTGATAACTATTTCACTGGCTCAAAAGAAAACCTCAAGAAGTGGATCGGTC 274
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 300 TGATTGTTGCTGATAACTATTTCACTGGATCAAAAGAAAACCTCAAGAAGTGGATCGGTC 359
Query 275 ACCCCAGGTTTGAACTTATTCGTCACGATGTTACCGAGCCTTTGTTGATCGAGGTTGATC 334
|||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 360 ACCCGAGGTTTGAGCTTATTCGTCACGATGTTACGGAGCCTTTGTTGATCGAGGTTGATC 419
Query 335 GGATTTACCATCTTGCTTGTCCTGCCTCTCCTATCTTCTACAAATACAACCCTGTTAAGA 394
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 420 GGATTTACCATCTTGCTTGTCCTGCCTCTCCTATCTTCTACAAGTACAACCCTGTTAAGA 479
Query 395 CAATCAAGACCAATGTGATTGGTACACTCAACATGCTCGGTCTTGCCAAGCGTGTTGGAG 454
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 480 CAATCAAGACCAATGTGATCGGTACACTCAACATGCTAGGTCTTGCCAAGCGTGTTGGAG 539
Query 455 CAAGAATTTTACTAACCTCAACCTCTGAAGTGTATGGAGATCCTCTCATCCACCCTCAAC 514
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 540 CAAGAATTTTACTAACCTCAACCTCGGAAGTGTATGGAGATCCTCTCATCCACCCTCAAC 599
Query 515 CAGAGAGCTACTGGGGAAATGTCAACCCTATTGGGGTTCGGAGTTGCTATGACGAAGGCA 574
|||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 600 CAGAGAGCTACTGGGGAAATGTCAACCCAATTGGTGTACGGAGTTGCTATGACGAAGGCA 659
Query 575 AGCGGGTAGCCGAAACCTTGATGTTTGACTACCACAGACAACATGGCATTGAAATCCGCA 634
|||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 660 AGCGTGTAGCCGAGACCTTGATGTTTGACTACCACAGACAACACGGCATTGAAATCCGCA 719
Query 635 TTGCTAGAATCTTCAACACATATGGTCCTCGAATGAACATCGATGATGGGCGTGTTGTGA 694
||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct 720 TTGCTAGAATCTTCAACACTTATGGTCCTCGAATGAACATTGATGATGGGCGTGTGGTGA 779
Query 695 GCAACTTCATTGCTCAAGCACTCCGGGGTGAGGCATTGACAGTTCAGAAACCGGGGACAC 754
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 780 GCAACTTCATTGCTCAAGCACTCAGAGGTGAGGCATTGACAGTTCAGAAACCGGGGACAC 839
Query 755 AGACCCGCAGTTTCTGTTATGTCTCCGACATGGTGGATGGACTTATCCGTCTTATGGAAG 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 AGACCCGCAGTTTCTGTTATGTCTCCGACATGGTGGATGGACTTATCCGTCTTATGGAAG 899
Query 815 GCAATGATACTGGCCCTATCAACATCGGTAACCCAGGTGAGTTCACAATGGTGGAACTGG 874
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 900 GGGATGATACTGGCCCTATCAACATCGGTAACCCAGGTGAATTCACAATGGTGGAACTTG 959
Query 875 CTGAGACGGTTAAGGAGCTTATTAACCCAAGCATAGAGATAAAGATGGTGGAGAACACAC 934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CTGAGACGGTTAAGGAGCTTATTAACCCAAGCATAGAGATAAAGATGGTGGAGAACACAC 1019
Query 935 CAGATGATCCAAGACAGAGGAAACCAGACATTAGTAAAGCCAAAGAAGTGTTGGGTTGGG 994
| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1020 CGGACGATCCAAGACAGAGGAAACCAGACATTAGTAAGGCCAAAGAAGTGTTGGGTTGGG 1079
Query 995 AGCCAAAGGTGAAGCTCAGAGAAGGACTTCCTCTCATGGAAGAAGATTTCCGACTAAGGC 1054
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 AGCCAAAGGTGAAGCTCAGAGAAGGACTTCCTCTCATGGAAGAAGATTTCCGACTAAGGC 1139
Query 1055 TTAACGTCCCAAGAAACTAAAACCACAAGAAAACACAGACGGTTTTGAGTTCACGAGAGT 1114
| |||||||| | |||| || | ||| | | | | ||||||||| ||||| |
Sbjct 1140 TCAACGTCCC------C-AAAA--ACTA-AAA-C-C-G--G-TTTTGAGTTAACGAGT-T 1182
Query 1115 TGTCAGCTGTTGAGTTATATGATGATGCTATTATACTACAAAGTGGTGGGTTTTTGTTTG 1174
| |||||||||| ||||||| ||| |||||||||||||||||||||||||||| ||||
Sbjct 1183 T-TCAGCTGTTGCGTTATATAATGGTGCTATTATACTACAAAGTGGTGGGTTTG-GTTT- 1239
Query 1175 GTCTCATGTGTTATTCATATTGCTTTT-GTTCGTAGAAAAATAAGTTGGGAATGGGTCTC 1233
| |||||||||||||||||||||| |||| |||| |||||||||||||| |||||||
Sbjct 1240 --C--ATGTGTTATTCATATTGCTTTTTGTTCTTAGAGAAATAAGTTGGGAAAGGGTCTC 1295
Query 1234 CTT-GTGAGGAATGGCTCTT-CTTTGTTTTTCAGTATATTGTGGTATGGTTATTATTTGT 1291
|| |||||||| ||||||| |||||||||||||||| ||||| |||||||||| ||| |
Sbjct 1296 TTTTGTGAGGAACGGCTCTTTCTTTGTTTTTCAGTATGTTGTGTTATGGTTATTGTTT-T 1354
Query 1292 GTGGTTTTAATGAAATTTGTTCAC 1315
||||||||||||||||||||||||
Sbjct 1355 GTGGTTTTAATGAAATTTGTTCAC 1378
> Ahg485016 jgi|Araly1|485016|fgenesh2_kg.5__1008__AT3G46440.1
Length=1319
Score = 1210 bits (655), Expect = 0.0
Identities = 929/1059 (88%), Gaps = 28/1059 (3%)
Strand=Plus/Plus
Query 31 TCTCTCTCTCAAGCAATGGCAGCTACAAGTGAGAAACAGAAC-A-CCACAAAGCCTCCTC 88
|||||||||| | ||||||| | | ||||||| ||||| ||| | || ||||||||||||
Sbjct 137 TCTCTCTCTC-ATCAATGGC-G-T-CAAGTGATAAACA-AACAAGCC-CAAAGCCTCCTC 190
Query 89 CTTCTCCTTCTCCTCTCCGCAATTCCAAGTTTTGTCAGCCCAATATGAGGATCTTGATCT 148
||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||
Sbjct 191 CTTCTCCTTCTCCTCTCCGTAATTCCAAGTTTTGTCAGTCAAATATGAGGATCTTGATCT 250
Query 149 CTGGAGGAGCTGGCTTCATTGGTTCTCAC-TTGGTTGATAAGCTT-ATGGAAAATGAGAA 206
| ||||||||||| |||||||| |||||| ||| |||||||| || |||||||| || ||
Sbjct 251 CAGGAGGAGCTGGATTCATTGGCTCTCACCTTG-TTGATAAG-TTGATGGAAAACGAAAA 308
Query 207 GAATGAGGTGGTTGTTGCTGATAACTATTTCACTGGCTCAAAAGAAAACCTCAAGAAGTG 266
|||||||||| |||||||||||||||||||||| || ||||| || ||||| ||||||||
Sbjct 309 GAATGAGGTGATTGTTGCTGATAACTATTTCACCGGTTCAAAGGACAACCTTAAGAAGTG 368
Query 267 GATCGGTCACCCCAGGTTTGAACTTATTCGTCACGATGTTACCGAGCCT-TTGTTGATCG 325
||||||||| || || ||||| ||||| ||||||||||| || ||||| || |||||||
Sbjct 369 GATCGGTCATCCGAGATTTGAGCTTATCCGTCACGATGTCACGGAGCCACTT-TTGATCG 427
Query 326 AGGTTGATCGGATTTACCATCTTGCTTGTCCTGCCTCTCCTATCTTCTACAAATACAACC 385
||||||||| |||||||||||| || |||||||| ||||| || |||||||| || ||||
Sbjct 428 AGGTTGATCAGATTTACCATCTCGCATGTCCTGCTTCTCCCATTTTCTACAAGTATAACC 487
Query 386 CTGTTAAGACAATCAAGACCAATGTGATTGGTACACTCAACATGCTCGGTCTTGCCAAGC 445
|||| |||||||||||||| ||||||||||| ||||| |||||||| ||||| |||||||
Sbjct 488 CTGTGAAGACAATCAAGACAAATGTGATTGGCACACTGAACATGCTAGGTCTCGCCAAGC 547
Query 446 GTGTTGGAGCAAGAATTTTACTAACCTCAACCTCTGAAGTGTATGGAGATCCTCTCATCC 505
||||||||||||| ||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct 548 GTGTTGGAGCAAGGATTTTGCTTACCTCAACCTCGGAAGTGTATGGAGATCCTCTCATCC 607
Query 506 A-CCCTCAACCAGAGAGCTACTGGGGAAATGTCAACCCTATTGGGGTTCGGAGTTGCTAT 564
| ||| || || |||||||| ||||||||||||||||| ||||| ||| |||| || |||
Sbjct 608 ATCCC-CAGCCTGAGAGCTATTGGGGAAATGTCAACCCAATTGGTGTTAGGAGCTGTTAT 666
Query 565 GACGAAGGCAAGCGGGTAGCCGAAACCTTGATGTTTGACTACCACAGACAACATGGCATT 624
|| ||||||||||| ||||| || |||||||||||||||||||| || || ||||| |||
Sbjct 667 GATGAAGGCAAGCGTGTAGCTGAGACCTTGATGTTTGACTACCATAGGCAGCATGGAATT 726
Query 625 GAAATCCGCATTGCTAGAATCTTCAACACATATGGTCCTCGAATGAACATCGATGATGGG 684
|||||||||||||| |||||||||||||| |||||||| || |||||||| ||||||||
Sbjct 727 GAAATCCGCATTGCCAGAATCTTCAACACTTATGGTCCACGCATGAACATTGATGATGGC 786
Query 685 CGTGTTGTGAGCAACTTCATTGCTCAAGCACTCCGGGGTGAGGCATTGACAGTTCAGAAA 744
|||||||| |||||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 787 CGTGTTGTAAGCAACTTCATTGCACAAGCACTCCGTGGTGAGGCATTGACTGTTCAGAAA 846
Query 745 CCGGGGACACAGACCCGCAGTTTCTGTTATGTCTCCGACATGGTGGATGGACTTATCCGT 804
|| ||||||||||| ||||||||||||||||| || |||||||| ||||||||||| ||
Sbjct 847 CCAGGGACACAGACACGCAGTTTCTGTTATGTATCTGACATGGTTGATGGACTTATGCGC 906
Query 805 CTTATGGAAGGCA-ATGATACTGG-CCCTATCAACATCGGTAACCCAGGTGAGTTCACAA 862
|| |||||||| | |||| ||||| ||| |||||||||||||||||||||||||| || |
Sbjct 907 CTCATGGAAGG-AGATGACACTGGTCCC-ATCAACATCGGTAACCCAGGTGAGTTTACCA 964
Query 863 TGGTGGAACTGGCTGAGACGGTTAAGGAGCTTATTAACCCAAGCATAGAGATAAAGATGG 922
|||||||||| |||||||| || |||||||| |||||||| |||||||||||||||||||
Sbjct 965 TGGTGGAACTTGCTGAGACAGTGAAGGAGCTGATTAACCCGAGCATAGAGATAAAGATGG 1024
Query 923 TGGAGAACACACCAGATGATCCAAGACAGAGGAAACCAGACATTAGTAAAGCC-AAAGAA 981
| ||||||||||| |||||||||||||||||||| || ||||| | |||| | ||||||
Sbjct 1025 TTGAGAACACACCGGATGATCCAAGACAGAGGAAGCCGGACATCAC-AAAGGCTAAAGAA 1083
Query 982 GTGTTGGGTTGGGAGCCAAAGGTGAAGCT-CAGAGAAGGACTTCCTCTCATGGAAGAAGA 1040
|||||||| ||||| |||||||||||||| | | ||||| ||||| || |||||||||||
Sbjct 1084 GTGTTGGGATGGGAACCAAAGGTGAAGCTTC-GTGAAGGCCTTCCCCTTATGGAAGAAGA 1142
Query 1041 TTTCCGACTAAGGCTTA-ACGTCCC-AAGAAACTAAAAC 1077
||| | |||||||| | ||||| ||||| |||||||
Sbjct 1143 CTTCAGGCTAAGGCTCGGA-GTCCCCAAGAA-CTAAAAC 1179
> Ahg481790 jgi|Araly1|481790|fgenesh2_kg.4__850__AT2G28760.2
Length=1395
Score = 821 bits (444), Expect = 0.0
Identities = 798/970 (82%), Gaps = 20/970 (2%)
Strand=Plus/Plus
Query 97 TCTCCTCTCCGCAATTCCAAGTTTTGTCAGCCCAATATGAGGATCTTGATCTCTGGAGGA 156
|||||||| || ||||||||||||| |||| | |||||||| |||||| | | ||||||
Sbjct 134 TCTCCTCTGCGTAATTCCAAGTTTTTTCAGTCAAATATGAGAATCTTGGTGACCGGAGGA 193
Query 157 GCTGGCTTCATTGGTTCTCACT-TGGTTGATAAGCTT-ATGGAAAATGAGAAGAATGAGG 214
||||| ||||||||||| || | | |||||||| || ||| |||| || |||||||| |
Sbjct 194 GCTGGATTCATTGGTTCACA-TCTCGTTGATAA-ATTGATGCAAAACGAAAAGAATGAAG 251
Query 215 TGGTTGTTGCTGATAACTATTTCACTGGCTCAAAAGAAAACCTCAAGAAGTGGATCGGTC 274
| | ||||| ||||| || ||||| || |||||||| || |||||||| ||||| ||||
Sbjct 252 TAATCGTTGCGGATAATTACTTCACAGGATCAAAAGACAATCTCAAGAAATGGATTGGTC 311
Query 275 ACCCCAGGTTTGAACTTATTCGTCACGATGTTACCGAGCCTTTGTTGA-TCGAGGTTGAT 333
| || || ||||| || |||||||| ||||| || || | |||||| | | |||||||||
Sbjct 312 ATCCAAGATTTGAGCTCATTCGTCATGATGTGACTGAACATTTGTT-AGTTGAGGTTGAT 370
Query 334 CGGATTTACCATCTT-GCTTGTCCTGCCTCTCCTATCTTCTACAAATACAACCCTGTTAA 392
| || |||||| || || |||||||| ||||| || ||||||||||||||||| |||||
Sbjct 371 CAAATCTACCAT-TTAGCATGTCCTGCATCTCCAATTTTCTACAAATACAACCCCGTTAA 429
Query 393 GACAATCAAGACCAATGTGATTGGTACACTCAACATGCTCGGTCTTGCCAAGCGTGTTGG 452
||| || || || ||||||||||| ||||| |||||| | || || || ||||| || ||
Sbjct 430 GACGATAAAAACAAATGTGATTGGCACACTTAACATGTTAGGACTAGCTAAGCGAGTCGG 489
Query 453 AGCAAGAATTTTACTAACCTCAACCTCTGAAGTGTATGGAGATCCTCTCATCCACCCTCA 512
|||||||||||||| || || || ||||||||||| || |||||| | | ||||||||
Sbjct 490 CGCAAGAATTTTACTTACTTCGACATCTGAAGTGTACGGTGATCCTTTGGTTCACCCTCA 549
Query 513 ACCAGAGAGCTACTGGGGAAATGTCAACCCTATTGGGGTTCGGAGTTGCTATGACGAAGG 572
||| |||||||| ||||||||||| ||||| || || ||| | ||||| || || |||||
Sbjct 550 ACCCGAGAGCTATTGGGGAAATGTAAACCCCATCGGTGTTAGAAGTTGTTACGATGAAGG 609
Query 573 CAAGCGGGTAGCCGAAAC-CTTGATGTTTGACTACCACAGACAACATGGCATTGAAATCC 631
|| || || || ||||| ||| |||||||| ||||| || |||||||| ||||| || |
Sbjct 610 AAAACGTGTTGCAGAAACACTT-ATGTTTGATTACCATAGGCAACATGGGATTGAGATAC 668
Query 632 GCATTGCTAGAATCTTCAACACATATGGTCCTCGAATGAACATCGATGATGGGCGTGTTG 691
|||| || || || |||||||||||||||||||| |||||||| |||||||| ||||| |
Sbjct 669 GCATAGCAAGGATATTCAACACATATGGTCCTCGTATGAACATTGATGATGGTCGTGTCG 728
Query 692 TGAGCAACTTCATTGCTCAAGCACTCCGGGGTGAGGCAT-TGACAGTTCAGAAACCGGGG 750
||||||||||||| ||||| || ||| |||| || || | |||| ||||||||||||||
Sbjct 729 TGAGCAACTTCATCGCTCAGGCTCTCAGGGGAGAAGC-TCTGACTGTTCAGAAACCGGGA 787
Query 751 ACACAGACCCGCAGTTTCTGTTATGTCTCCGACATGGTGGATGGACTTATCCGTCTT-AT 809
||||| |||||||||||||||||||| |||||||||||||| || || || ||| || ||
Sbjct 788 ACACAAACCCGCAGTTTCTGTTATGTTTCCGACATGGTGGAAGGTCTAATGCGT-TTGAT 846
Query 810 GGAAGGCAATGATACTGGCCCTATCAACATCGGTAACCCAGGTGAGTTCACAATGGTGGA 869
|||||| | | || || || || ||||| || || ||||| || ||||| ||||| ||
Sbjct 847 GGAAGGGGACCAAACCGGACCGATAAACATAGGCAATCCAGGCGAATTCACGATGGTTGA 906
Query 870 ACTGGCTGAGACGGTTAAGGAGCTTATT-AACCCAAGCATAGAGATAAAGATGGTGGAGA 928
|| |||||||||||||| ||||||||| |||| | | | |||||||||||||||||||
Sbjct 907 GCTCGCTGAGACGGTTAAAGAGCTTATTAAACCGGA-CGTGGAGATAAAGATGGTGGAGA 965
Query 929 ACACACCAGATGATCCAAGACAGAGGAAACCAGACATTAGTAAAGCCAAAGAAGTG-TTG 987
|||||||||||||||||| |||||| ||||||||||| || ||||| |||||||| |||
Sbjct 966 ACACACCAGATGATCCAAAACAGAGAAAACCAGACATAAGCAAAGCTAAAGAAGTTCTTG 1025
Query 988 GGTTGGGAGCCAAAGGTGAAGCT-CAGAGAAGGACTTCCTCTCATGGAAGAAGATTTCCG 1046
| |||||| |||||||||||||| | | ||||| |||||||| |||||||||||||| ||
Sbjct 1026 G-TTGGGAACCAAAGGTGAAGCTAC-GTGAAGGGCTTCCTCTTATGGAAGAAGATTTTCG 1083
Query 1047 ACTAAGGCTT 1056
|||||||||
Sbjct 1084 TCTAAGGCTT 1093
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50817848361
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5