BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59300.1
Length=883
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950672 jgi|Araly1|950672|scaffold_802559.1 907 0.0
Ahg485019 jgi|Araly1|485019|fgenesh2_kg.5__1011__AT3G46460.1 647 0.0
> Ahg950672 jgi|Araly1|950672|scaffold_802559.1
Length=542
Score = 907 bits (491), Expect = 0.0
Identities = 525/542 (97%), Gaps = 0/542 (0%)
Strand=Plus/Plus
Query 92 TTTCTCTATCATCATCATCCATGGCTTCGCAAGCTAGCCTTCTCCTTCAGAAACAACTCA 151
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 TTTCTCTATCATCATCATCCATGGCTTCGCAAGCTAGCCTTCTCCTTCAGAAACAACTTA 60
Query 152 AAGATCTCTGTAAGCATCCTGTTGATGGATTCTCTGCTGGTCTCGTTGATGAGAAGAATA 211
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 61 AAGATCTCTGTAAGCATCCTGTTGATGGATTCTCTGCTGGTCTCGTTGATGATAAGAATA 120
Query 212 TATTCGAATGGAGCGTTACCATTATCGGACCTCCTGATACTCTCTATGAAGGAGGATTCT 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TATTCGAATGGAGCGTTACCATTATCGGACCTCCTGATACTCTCTATGAAGGAGGATTCT 180
Query 272 TTAACGCGATTATGACATTTCCGCAAAACTATCCGAATAGTCCGCCAACCGTGAGGTTTA 331
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 181 TTAACGCTATTATGACATTTCCGCAAAACTATCCGAATAGCCCGCCAACCGTGAGGTTTA 240
Query 332 CTTCGGATATGTGGCATCCTAACGTTTATTCTGATGGTCGTGTTTGCATATCTATTCTTC 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTTCGGATATGTGGCATCCTAACGTTTATTCTGATGGTCGTGTTTGCATATCTATTCTTC 300
Query 392 ATCCTCCCGGTGATGATCCTAGCGGTTATGAGCTTGCAAGCGAGCGTTGGACTCCTGTTC 451
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 301 ATCCTCCCGGTGATGATCCTAGCGGTTATGAGCTTGCAAGCGAGCGCTGGACTCCTGTTC 360
Query 452 ATACAGTTGAGAGTATTATGTTGAGTATCATATCAATGCTTTCTGGTCCTAACGATGAGT 511
|||| ||||| ||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct 361 ATACTGTTGAAAGTATTATGTTGAGTATCATATCGATGCTTTCTGGTCCCAATGATGAGT 420
Query 512 CTCCAGCAAATGTTGAAGCTGCCAAAGAATGGCGAGATAAGAGAGATGAGTTCAAGAAGA 571
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 421 CTCCAGCAAATGTTGAAGCTGCCAAAGAATGGCGAGAGAAGAGAGACGAGTTCAAGAAGA 480
Query 572 AAGTGAGCCGTTGTGTCAGAAAGTCTCAAGAAATGTTTTGATCAACGTCAAACTTCACAC 631
|||||||||| |||||||||||||||||||||||||| ||| |||| || ||||||||||
Sbjct 481 AAGTGAGCCGCTGTGTCAGAAAGTCTCAAGAAATGTTGTGAACAACTTCCAACTTCACAC 540
Query 632 CT 633
||
Sbjct 541 CT 542
> Ahg485019 jgi|Araly1|485019|fgenesh2_kg.5__1011__AT3G46460.1
Length=781
Score = 647 bits (350), Expect = 0.0
Identities = 473/532 (89%), Gaps = 10/532 (2%)
Strand=Plus/Plus
Query 87 CTCGATTTCTCTATCATCATCATCCATG-GCTTCGCAAGCTAGCCTTCTCCTTCAGAAAC 145
||||||||||| |||||| || ||||| | || |||||| | ||||| ||||||||||
Sbjct 41 CTCGATTTCTC-ATCATC--CA-CCATGAAC-TCACAAGCTTGTCTTCTTCTTCAGAAAC 95
Query 146 AACTCAAAGATCTCTGTAAGCATCCTGTTGATGGATTCTCTGCTGGTCTCGTTGATGAGA 205
| || |||||||| |||||||||||||| |||||||||||||||||| | ||||||||||
Sbjct 96 AGCTTAAAGATCTATGTAAGCATCCTGTAGATGGATTCTCTGCTGGTTTAGTTGATGAGA 155
Query 206 AGAATATATTCGAATGGAGCGTTACCATTATCGGACCTCCTGATACTCTCTATGAAGGAG 265
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 156 AGAATATATTCGAATGGAGCGTTACCATTATTGGACCTCCTGATACTCTCTATGAAGGAG 215
Query 266 GATTCTT-TAACGCGATTATGACATTTCCG-CAAAACTATCCGAATAGTCCGCCAACCGT 323
|||| || || || |||||| | ||||| ||||||||||| ||||| || || || ||
Sbjct 216 GATTTTTCTAT-GCCATTATGTC-TTTCCCACAAAACTATCCTAATAGCCCACCTACGGT 273
Query 324 GAGGTTTACTTCGGATATGTGGCATCCTAACGTTTATTCTGATGGTCGTGTTTGCATATC 383
| |||||||||| ||||| |||||||||||||||||| | |||||||||||||| |||||
Sbjct 274 GCGGTTTACTTCAGATATTTGGCATCCTAACGTTTATCCCGATGGTCGTGTTTGTATATC 333
Query 384 TATTCTTCATCCTCCCGGTGATGATCCTAGCGGTTATGAGCTTGCAAGCGAGCGTTGGAC 443
|||||| |||||||| ||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct 334 TATTCTACATCCTCCTGGTGATGATCCAAGCGGATATGAGCTTGCAAGTGAGCGTTGGAC 393
Query 444 TCCTGTTCATACAGTTGAGAGTATTATGTTGAGTATCATATCAATGCTTTCTGGTCCTAA 503
|||||||| |||||||||||||| ||||||||||||||||| ||||| |||||||| ||
Sbjct 394 GCCTGTTCACACAGTTGAGAGTATCATGTTGAGTATCATATCGATGCTCTCTGGTCCCAA 453
Query 504 CGATGAGTCTCCAGCAAATGTTGAAGCTGCCAAAGAATGGCGAGATAAGAGAGATGAGTT 563
|||||| ||||| || || ||||||||||| ||||||||| |||| |||||||| |||||
Sbjct 454 CGATGAATCTCCTGCGAACGTTGAAGCTGCTAAAGAATGGAGAGAGAAGAGAGACGAGTT 513
Query 564 CAAGAAGAAAGTGAGCCGTTGTGTCAGAAAGTCTCAAGAAATGTTTTGATCA 615
||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 514 TAAGAAGAAAGTGAGCCGTTGTGTGAGAAAGTCTCAAGAAATGTTTTGATCA 565
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32709462786
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5