BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G59305.1

Length=493
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg950673 jgi|Araly1|950673|scaffold_802560.1                        379    9e-105


> Ahg950673 jgi|Araly1|950673|scaffold_802560.1
Length=271

 Score =  379 bits (205),  Expect = 9e-105
 Identities = 242/260 (93%), Gaps = 2/260 (1%)
 Strand=Plus/Plus

Query  12   TAATTCTCTACATAAGAAATATGAGAAGACATGATATCATCATCAAGCTTCTCCTTCTCA  71
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    TAATTCTCTACCTAAGAAATATGAGAAGACATGATATCATCATCAAGCTTCTCCTTCTCA  60

Query  72   TGTGTCTTCTT-CTCAGCAGATTCGTGACTCGGGAATGTCAAGAAGTCCATTTCAAGATT  130
            | || |||||| |||||||||  | ||||||||||||| | |||||||||||||||||||
Sbjct  61   TCTG-CTTCTTTCTCAGCAGAAACATGACTCGGGAATGCCGAGAAGTCCATTTCAAGATT  119

Query  131  GGACCTGCAAAGATCATCGCAAAACCGAACAACGCAAGAGTGATGCCAACATGGGGCGAA  190
            |||||||||||||||||||||||||||||  ||| ||||||||||||||| |||| ||||
Sbjct  120  GGACCTGCAAAGATCATCGCAAAACCGAATTACGAAAGAGTGATGCCAACTTGGGTCGAA  179

Query  191  GaaaaaaaGTGGCATAAGCACCCCTCGGGACCTAACCCAACAGGAAATCGTCACCCACCG  250
            ||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct  180  GAAAAAAAGTGGCATAAGCACCCATCCGGACCGAACCCAACAGGAAATCGTCACCCACCG  239

Query  251  GTCAAACACTGAGTCGATAA  270
            ||||||| ||||||||||||
Sbjct  240  GTCAAACCCTGAGTCGATAA  259



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17894971241


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5