BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59330.1
Length=424
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917675 jgi|Araly1|917675|Al_scaffold_0008_2426 436 5e-122
Ahg496059 jgi|Araly1|496059|fgenesh2_kg.8__1875__AT5G59320.1 315 2e-85
> Ahg917675 jgi|Araly1|917675|Al_scaffold_0008_2426
Length=348
Score = 436 bits (236), Expect = 5e-122
Identities = 315/349 (90%), Gaps = 22/349 (6%)
Strand=Plus/Plus
Query 97 ATGGCTTTGGCTCTCAGGTTCTTCATATGCTTCGTTTTGACGGTGTGCATAGTTTCATCA 156
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATGGCTTTGGCTCTCAAGTTCTTCATATGCTTCGTTTTGACGGTGTGCATAGTTGCATCA 60
Query 157 GTAGATGCAGAAATCTCATGTGGCACAGTGGTAAGTAACTTGGCTCCATGTGCCAACTAC 216
|||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 61 GTAGATGCAGCAATCTCATGTGCCACAGTGGTAAGTAACTTGGCTCCATGTGTCAACTAC 120
Query 217 CTTTCAAAAGGTGGTGTGGTACCGGATCTGTGTTGTGAAGGAGTTGAAAAGTTGAACGGT 276
|| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 121 CTATCAAAAGGTGGTGTGGTACCGGATCTGTGTTGCGAAGGAGTTCAAAAGTTGAACGGT 180
Query 277 GTGGCTCAAACCAT---G--CCG--A-------TGC-----C-TACAGTCCATTGCAAAG 316
|||||||||||| | ||| | ||| | ||||||||| |||||||
Sbjct 181 ATGGCTCAAACCACACCGGACCGCCAACAAGCATGCAAATGCCTACAGTCCACTGCAAAG 240
Query 317 GGCATTTCTGGTCTCAACCCAAGTCTAGCCTCTGGTCTTCCTG-AAGAGTGCGGTGTTAG 375
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 241 GGCATTTCTGGTCTCAACCCAAGTCTAGCCTCTGGTCTTCCTGGAA-AGTGCGGTGTTAG 299
Query 376 CATTCCCTATCCCATTTCCTTGAGCACTAACTGCGACAACGTCGAGTGA 424
||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 300 CATTCCCTATCCCATTTCCTTGAGCACTAACTGCGACAACGTCAAGTGA 348
> Ahg496059 jgi|Araly1|496059|fgenesh2_kg.8__1875__AT5G59320.1
Length=510
Score = 315 bits (170), Expect = 2e-85
Identities = 320/387 (83%), Gaps = 32/387 (8%)
Strand=Plus/Plus
Query 63 TTTGTAAT-AACCAAAACAAAATAGAGCAAACACAATGGCTTTGGCTCTCAGGTTCTTCA 121
||||| || |||| ||||| | ||| |||||||||||||||| ||| | ||||||||||
Sbjct 49 TTTGTTATCAACC--AACAAGA-AGAACAAACACAATGGCTTTCGCTTTGAGGTTCTTCA 105
Query 122 TATG-CTTCGTTTTGACGGTGTGCATAGTTTCATCAGTAGATGCAGAAATCTCATGTGGC 180
||| ||| ||||| ||||||||||||||| ||||||| ||||| | |||||||||||||
Sbjct 106 CATGCCTT-GTTTTAACGGTGTGCATAGTTGCATCAGTCGATGCTGCAATCTCATGTGGC 164
Query 181 ACAGTGGTAAGTAACTTGGCTCCATGTGCCAA-CTACCTTTCAAAAGGT-GGTGTGGTAC 238
||||||| | ||| |||||||||||||| ||| |||||| ||||||||| ||| |||| |
Sbjct 165 ACAGTGGCAGGTAGCTTGGCTCCATGTG-CAACCTACCTATCAAAAGGTGGGT-TGGTGC 222
Query 239 CGGATCTGTGTTGTGAAGGAGTTGAAAAGTTGAACGGTGTGGCT----------C--A-- 284
| || |||||||| |||||| |||||||||||||| ||||| | |
Sbjct 223 CACCTCCGTGTTGTGCAGGAGTCAAAAAGTTGAACGGTATGGCTCAAACCACACCAGACC 282
Query 285 ---AAC---CATGCCGATGCCTACAGTCCATTGCAAAGGGCATTTCTGGTCTCAACCCAA 338
||| ||||||||||| ||||||||| ||| ||| |||||||||||||||||||||
Sbjct 283 GCCAACAAGCATGCCGATGCATACAGTCCACTGCGAAGAGCATTTCTGGTCTCAACCCAA 342
Query 339 GTCTAGCCTCTGGTCTTCCTG-AAGAGTGCGGTGTTAGCATTCCCTATCCCATTTCCTTG 397
||||||||||||| ||||||| || |||||||||||||||||||||||||||| ||| ||
Sbjct 343 GTCTAGCCTCTGGCCTTCCTGGAA-AGTGCGGTGTTAGCATTCCCTATCCCATCTCCATG 401
Query 398 AGCACTAACTGCGACAACGTCGAGTGA 424
|||||||||||| ||||| || |||||
Sbjct 402 AGCACTAACTGCAACAACATCAAGTGA 428
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15262235600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5