BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59340.1
Length=850
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917676 jgi|Araly1|917676|Al_scaffold_0008_2427 850 0.0
Ahg931663 jgi|Araly1|931663|scaffold_304120.1 84.2 1e-15
> Ahg917676 jgi|Araly1|917676|Al_scaffold_0008_2427
Length=786
Score = 850 bits (460), Expect = 0.0
Identities = 699/807 (87%), Gaps = 45/807 (6%)
Strand=Plus/Plus
Query 64 ATGGAAAACGAAGTAAACGCAGGAACAGCAAGCAGTTCAAGATGGAACCCAACGAAAGAT 123
||||||||||||| ||||| ||||| |||||||||||| ||||||||||||| ||||||
Sbjct 1 ATGGAAAACGAAGGAAACGTTGGAACGGCAAGCAGTTCACGATGGAACCCAACAAAAGAT 60
Query 124 CAGATCACGCTACTGGAAAATCTTTACAAGGAAGGAATACGAACTCCGAGCGCCGATCAG 183
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 CAGATAACGCTACTGGAAAATCTTTACAAGCAAGGAATACGAACTCCGAGCGCCGATCAG 120
Query 184 ATTCAGCAGATCACCGGTAGGCTTCGTGCGTACGGCCATATCGAAGGTAAAAACGTCTTT 243
||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 121 ATTCAGCAGATCACCGGCAGGCTCCGTGCGTACGGCCATATCGAGGGTAAAAACGTCTTT 180
Query 244 TACTGGTTCCAGAACCATAAGGCTAGGCAACGCCAAAAGCAGAAACAGGAGCGCATGGCT 303
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 TACTGGTTTCAGAACCATAAGGCTAGACAACGCCAAAAGCAGAAACAGGAGCGCATGGCT 240
Query 304 TACTTCAATCGCCTCCTCCACAAAACCTCCCGTTTCTTCTACCCCCCTCCTTGCTCAAAC 363
||||||||||| ||||||||||||||||||||||||||| |||| |||||||| ||||||
Sbjct 241 TACTTCAATCGTCTCCTCCACAAAACCTCCCGTTTCTTCCACCCTCCTCCTTGTTCAAAC 300
Query 364 G-----T-------G--------GG-TTGTGTCAGTCCGTACTATTTACAGCAAGCAAGT 402
| | | || |||||| |||||||||||||| ||||||| | ||
Sbjct 301 GGCACATTTCTTCCGTTTTCTTTGGGTTGTGTTAGTCCGTACTATTTGCAGCAAGTAGGT 360
Query 403 GATCATCATATGAATCAACATGGAAGTGTATACACAAACGATCTTCTTCACAGAAACAAT 462
| | | || | |||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 361 --T--TGA-ATCAG-CAACATGGAAGTGTATACACAAACGATCTTCTTCACAGTAACGAT 414
Query 463 GTGATGATTCCAAGTGGTGGCTACGAGAAACGGACAGTCACACAACATCAGAAACAACTT 522
||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||
Sbjct 415 ATGATGATTCCAAGTGGTGGCTACGAGAAACGGACAACCACAGAACATAAGAAACAACTT 474
Query 523 TCAGACATAAGAACAACAGCAGCCACAAGAATGCCAATTTCTCCGAGTTCACTCAGATTT 582
|||||| | ||||| || || ||||||||||| ||| |||| |||||||||| |
Sbjct 475 TCAGAC-T-----CAACATCA---ACTAGAATGCCAATGTCTTCGAGCTCACTCAGATAT 525
Query 583 GACAGATTTGCCCTCCGTGATAACTGTTATGCCGGTGAGGACATTAACGTCAATTCCAGT 642
|||||||||||||| |||||| |||||||| |||||||| |||||||| ||||||||||
Sbjct 526 GACAGATTTGCCCTTCGTGATCACTGTTATTACGGTGAGGGCATTAACGGCAATTCCAGT 585
Query 643 GGACGGAAAACACTCCCTCTTTTTCCTCTTCAGCCTTTGAATGCAAGTAATG-CTGATGG 701
|| ||||||||||| ||||||||||| |||||||||||| |||| | ||||| | |||||
Sbjct 586 GGGCGGAAAACACTTCCTCTTTTTCCACTTCAGCCTTTGGATGCCACTAATGAC-GATGG 644
Query 702 TATGGGAAGTTCCAGTTTTGCCCTTGGTAGTGATTCTCCGG-TGGATTGTTCTAGCGATG 760
| | |||| |||||||||||||||||||||||||||||||| || ||||||| |||| |
Sbjct 645 TGTTGGAAATTCCAGTTTTGCCCTTGGTAGTGATTCTCCGGGTGT-TTGTTCTGGCGACG 703
Query 761 GAGCCGGCCGAGAGCAGCCGTTTATTGATTTCTTTTCTGGTGGTTCTACTTC-TACTCGT 819
| | ||||||||||||||||||||||||||||||||||||||| ||| | | | | ||
Sbjct 704 GTGGCGGCCGAGAGCAGCCGTTTATTGATTTCTTTTCTGGTGGGACTAGT-CGT--T-GT 759
Query 820 TTCGATAGTAATGGTAATGGGTTGTAA 846
|||||||||| ||| |||| |||||||
Sbjct 760 TTCGATAGTAGTGGAAATGCGTTGTAA 786
> Ahg931663 jgi|Araly1|931663|scaffold_304120.1
Length=932
Score = 84.2 bits (45), Expect = 1e-15
Identities = 79/95 (83%), Gaps = 4/95 (4%)
Strand=Plus/Plus
Query 175 GCCGATCAGATTCAGCAGATCACCGGTAGGCTTCGTG-C-GTACGGCCATATCGAAGGTA 232
||||||||||| ||| ||||||| | |||| | | | | |||||| | ||||| || |
Sbjct 208 GCCGATCAGATCCAGAAGATCACTGCAAGGC-T-GAGACAGTACGGAAAGATCGAGGGCA 265
Query 233 AAAACGTCTTTTACTGGTTCCAGAACCATAAGGCT 267
| |||||||||||||||||||||||||||||||||
Sbjct 266 AGAACGTCTTTTACTGGTTCCAGAACCATAAGGCT 300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31451406525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5