BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59350.1
Length=1432
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496062 jgi|Araly1|496062|fgenesh2_kg.8__1878__AT5G59350.1 1496 0.0
> Ahg496062 jgi|Araly1|496062|fgenesh2_kg.8__1878__AT5G59350.1
Length=1362
Score = 1496 bits (810), Expect = 0.0
Identities = 1093/1217 (90%), Gaps = 69/1217 (6%)
Strand=Plus/Plus
Query 212 TTCACGCATTTACGTTTTTCTCAATCTTTACATATATGGTAACCAACTCTTATTCCATTC 271
||||| |||||| ||||||||||||| || ||||||||||||||| |||||||||||||
Sbjct 191 TTCACACATTTAGGTTTTTCTCAATCGTT--ATATATGGTAACCAAGTCTTATTCCATTC 248
Query 272 CTCTGTAACTCACACAAATTCC-TGTCC-AAA-AA-------TTAGTTTTTTCTTTTCAT 321
|||||||| ||||||||||||| || || ||| || || |||||| |||| ||
Sbjct 249 CTCTGTAATTCACACAAATTCCTTG-CCAAAATAAGGTTTTTTTTTTTTTTTTTTTTAAT 307
Query 322 GTGATGTGAGAATTTGGGTTACGAGAAAGATGAAGACTATTAGTGGATTAGGTATTGGGT 381
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
Sbjct 308 GTGATGTGAGAATTTGGGTGAAGAGAAAGATGAAGACTATTAGTGGATTAGGTATTGGTT 367
Query 382 TAAGTTTAATGTTTGGGTTTCTTCTATTAGCACTTGTTGGAGAAGTCTACTATCTTCTaa 441
| ||||| | | | |||||||||| |||||||||||| ||||||||| || ||||| |
Sbjct 368 TGAGTTT-A-G--T--GTTTCTTCTACTAGCACTTGTTGCAGAAGTCTATTACCTTCTGA 421
Query 442 gatgtaagaagcacaagaagagagtcataagccaagagagtgaagaagagaaagaagaag 501
|||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 422 GATGGAAGAAGCACAAGAAGAGAGTCACAAGCCAAGCGAGTGAAGAAGAGAAAGAAGAAG 481
Query 502 aaCAACAACAAAACGGATACGCTAAAGAACTAATCCAGCTCTTCTGCTTCAAAAAACCTC 561
|| ||| | ||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 482 AAGAAC--C-AAACGGATACGCTAAAGAACTTATCCAGCTCTTCTGCTTCAAAAAGCCTC 538
Query 562 AATCTCTGCAGCAAAACAATGGAGGAAGAGAAGGTGAAGTCTCAATGAATGAAGATGGGA 621
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 539 AATCTCTGCAGCAAAACAATGGAGGAAGAGAAGGTGAAATCTCAATGAATCAAGATGGGA 598
Query 622 ATCCAGATTTAGAACTTGGGTTGATGAAACACTTGAATGGAGGAGATCTAGGGTTTGAAG 681
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 ATCCAGATTTGGAACTTGGGTTGATGAAACACTTGAATGGAGGAGATCTAGGGTTTGAAG 658
Query 682 CAGAGCTTATGAAGCTTCATAACCAGAGGTTTCTATTCACAATCATGGAAGAGACAAAAG 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CAGAGCTTATGAAGCTTCATAACCAGAGGTTTCTATTCACAATCATGGAAGAGACAAAAG 718
Query 742 CAGATTTGGAATCTGAAGATGGGGGTAAATCAAGATTAGGTTCAAGATCAAGAAGAAGAA 801
|||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||
Sbjct 719 CAGATTTGGAATCTGATGATGGTAGCAAATCAAGATTAGGTTCAAGATCAAGAAGAAGAA 778
Query 802 GCTTGAGTGATGTTCCTAATGACTGTAATACCCCTGGATTCACTCCATTGGCTTCTCC-- 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GCTTGAGTGATGTTCCTAATGACTGTAATACCCCTGGATTCACTCCATTGGCTTCTCCAA 838
Query 860 -TA-A--AAAGTCATCATCTCCTCTGGAGTCTTATCCACACCATGGATTCAATCCTCTGT 915
|| | |||||| | |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 839 CTACACTAAAGTC-T--TCTCCTTTGGAGTCTTATCCACACCATGGATTCAATCCTCTGT 895
Query 916 TTGAGTCAGACGGTGAGCTTGAGTTTAACAAGTTTTTCAGGTCCTCTTCTTCACCTCCAC 975
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 896 TTGAATCAGACGGTGAGCTTGAGTTTAACAAGTTTTTCAGGTCGTCTTCTTCACCTCCAC 955
Query 976 CGAAGTTTAAGTTCAtgagagatgctgaagagaagctaaggaagagattgattgaagaag 1035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 CGAAGTTTAAGTTCATGAGAGATGCTGAAGAGAAGCTAAGGAAGAGATTGATTGAAGAAG 1015
Query 1036 ccaaaagaagagaaC--T---CT-CGATTGTAACAGAAGGTTCGTTTCTCAAGTTTATGA 1089
||| |||||||||| | || || |||||||| ||||||||||| | ||||| ||||
Sbjct 1016 CCAGAAGAAGAGAAGGGTTAGCTTCGGTTGTAACACAAGGTTCGTTTTTGAAGTTCATGA 1075
Query 1090 ATCCTGCGATGAACAGAGAGAAGAAACAGAGTATTCAAGAATGTGATGAAACGGTGTCGT 1149
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1076 ATCCTGCAATGAACAGAGAGAAGAAACAGAGTATTCAAGAATCTGATGAAACGGTGTCGT 1135
Query 1150 TTTCTCCTTCTTCTTCCTCATCAGGTACAACAATTACAAATCTTAGAACGTTAGTGGTTG 1209
|||||||||||||||| |||||||||||||| | ||||||||||||||||||||
Sbjct 1136 TTTCTCCTTCTTCTTC---ATCAGGTACAACAA--A----TCTTAGAACGTTAGTGGTTG 1186
Query 1210 TTTAGTATTAGCATCTCTGTGGCTTTACTCttttaatttttatttttggttgaatttttg 1269
|||||| ||||||||||| | |||| | ||||| ||||||| ||||
Sbjct 1187 TTTAGTTTTAGCATCTCT-T---TTTA-------A-TTTTT------GGTTGAAATTTT- 1227
Query 1270 tttCCAAAAATTTCAATTATATT-GTGTGAAAATTCTATCTTTCCTTTCTCTCATTCTTG 1328
|||| || |||||||||| |||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1228 TTTC-AAGAATTTCAATTTTATTTGTGTGAAAATTCTATCTTTCCTTTCTCTCGTTCTTG 1286
Query 1329 TTATTTAGGAATGATTT-CTTCTGTACGTATCAATCTGAAATTTTTTGCAGATGCTTGTT 1387
|| ||| |||||||||| ||||||||||||| ||||||||| ||| |||||||||||||
Sbjct 1287 TTTTTTGGGAATGATTTTCTTCTGTACGTATGAATCTGAAAAATTT-GCAGATGCTTGTT 1345
Query 1388 TTGTTTTCGTCTAAGAA 1404
|| |||||||||||||
Sbjct 1346 TTAATTTCGTCTAAGAA 1362
Score = 204 bits (110), Expect = 2e-51
Identities = 168/193 (87%), Gaps = 15/193 (8%)
Strand=Plus/Plus
Query 1 AAGTATAACAAAGAACCCAACTTGTGAACCTAAATTGCTGTGAAAGAGATCGTTCTTCTC 60
||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||
Sbjct 1 AAGTATAACAAAGAACCCAACTTGTGAACCTAAATTGCTTTGAAAGAGA-AGTTCTTTTC 59
Query 61 TCTGTTTCACAT-aaa-agga-a--a-acataagaaaagaaaaaaaaaaa---TCTTTCT 111
|||||||||| | ||| | || | | | | || |||| ||||||||||| |||||||
Sbjct 60 TCTGTTTCACTTAAAATAAGATAGCACAAAAAAAAAAAAAAAAAAAAAAACTGTCTTTCT 119
Query 112 CTTTCACAATCTTAA-TT-TCTGCTCACCATCAAGGCAAGTTTCCTTCTTTTGATCCTC- 168
|||| ||||||||| || |||||||||||||||||||||||||||||||||| |||||
Sbjct 120 CTTT--CAATCTTAATTTCTCTGCTCACCATCAAGGCAAGTTTCCTTCTTTTGCTCCTCT 177
Query 169 AACAATTTCCATT 181
|||||||||||||
Sbjct 178 AACAATTTCCATT 190
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53554884470
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5