BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59360.1
Length=1086
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496063 jgi|Araly1|496063|fgenesh2_kg.8__1879__AT5G59360.1 1055 0.0
> Ahg496063 jgi|Araly1|496063|fgenesh2_kg.8__1879__AT5G59360.1
Length=907
Score = 1055 bits (571), Expect = 0.0
Identities = 759/846 (90%), Gaps = 28/846 (3%)
Strand=Plus/Plus
Query 54 ATTTATTAATTAGAAGTCCTTCTCATTTTACGGCCTGCATGCC-TT-GCTCCTTTGTCGA 111
|||||| |||||||||||||||||||||||| | ||||||||| || ||||| |||||||
Sbjct 20 ATTTATAAATTAGAAGTCCTTCTCATTTTACTGTCTGCATGCCTTTAGCTCCCTTGTCGA 79
Query 112 TTTGGAGGTGTCTTCGCTCTTTGTTATATACCAAGCGCACACACTCACAAATATCAAATA 171
| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 80 TGTGGAGGTGTCGTCGCTCTTCGTTATATACCAAGCGCACACACTCACAAATATCAAAGA 139
Query 172 CACACACACTTAAAGATCTTAATTTCAATTTCTCTGCTCCTTATTTGCATCA-A-atata 229
|||| ||| |||||||| ||||||||||||| |||||||||||||||||| | |||||
Sbjct 140 GACACTCACACAAAGATCTCAATTTCAATTTCTTTGCTCCTTATTTGCATCATATATATA 199
Query 230 tgtaca-atgatataaacacagtcacatacatat--atacacgtataccttgatatatat 286
| || | || ||||| ||| || ||| |||||| ||||||||||||||| ||||||||
Sbjct 200 TATATATAT-ATATATACA-AG-CAC--ACATATGCATACACGTATACCTTAATATATAT 254
Query 287 CGAGATCTTGTTTGTTGTTTCTGATCGATCAGTAGTCATTATTTTTTCTTTTA-AAGTTA 345
||||||||| |||||||||||||| |||| ||||||||||||||||||||| | |||
Sbjct 255 CGAGATCTT-CTTGTTGTTTCTGAT--ATCA-TAGTCATTATTTTTTCTTTTAGTA-TTA 309
Query 346 CTCTCTCTTTTCCTGTTTGTGATAAGATGTCAAAGATTAAGATTTTTCATTTATTCCCTG 405
||||| |||||||||||||||||||||||||||| | ||||||||||||||||||| |||
Sbjct 310 CTCTCGCTTTTCCTGTTTGTGATAAGATGTCAAATAATAAGATTTTTCATTTATTCTCTG 369
Query 406 ATGACAAAGATATTGAAGCAACGCAACAACCTGAGAGTCTCCTAGTTCCATCAAAATCC- 464
||||||||||||| ||||| | ||||||||| |||||||||||||||||||||||| ||
Sbjct 370 ATGACAAAGATATCGAAGCCATGCAACAACCCGAGAGTCTCCTAGTTCCATCAAAA-CCG 428
Query 465 GACTCTCTTGATTCATCATTATCT-CGACACCACCAAGAAAATCAATCTAACAGACAACG 523
|| ||| |||||||||||||||| || || || |||||| |||||||||| |||||||
Sbjct 429 GA--CTC-TGATTCATCATTATCTCCG-CATCATCAAGAAGATCAATCTAAAAGACAACA 484
Query 524 GAACCACCAACACCGACAACAAGATCAAGAACTAGAAAATCTACAAGATGGATCGAGAGG 583
||||||||||||| |||||||||| ||||||||||||| || ||||| |||||||||||
Sbjct 485 AAACCACCAACACCAACAACAAGATGAAGAACTAGAAAAGCTCCAAGAAGGATCGAGAGG 544
Query 584 AAAACGAAAATGGGAATGTAAGGAT-GAAGAGTCTCCTGTAAAGATCCCAGAGACGCCGA 642
||||||||||||||||||| ||||| ||| | |||| |||||||||||||||||||||||
Sbjct 545 AAAACGAAAATGGGAATGTGAGGATGGAA-ATTCTCGTGTAAAGATCCCAGAGACGCCGA 603
Query 643 GAAACTCGAACAGTGTGTGTTATTGTCCTCCTCGACCGCCGAGAAAGCCAAAAGCTATCC 702
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
Sbjct 604 TAAACTCGAACAGTGTGTGTTATTGTCCTCCTCGGCCGCCGAGAAAACCAAAAGCTATTC 663
Query 703 CGTCCATGAAACGGAGAGGCATGTGGGTAAAGAGATCGGTGGtttttttAGATGTAGCTA 762
|| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 664 CGGCGATGAAACGGAGAGCCATGTGGGTAAAGAGATCGGTGGTTTTTTTAGATGTAGCCA 723
Query 763 GAGAGGTCGAATCCATGTTTCCTCCGTCTGTTCTTCAAGATTTTGGTAAAAAGATCAAGA 822
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 724 GAGAGGTCGAATCCATGTTTCCTCCGTCTGTTCTTGAAGATTTTAGTAAAAAGATCAAGA 783
Query 823 AAGCGAGATTTTAACCAATAGTCTATACATATATCTCTATCTATCCATAGGCTTGAtttg 882
|||| |||| |||| | |||||||||| |||||| ||||||||||||| |||||||||||
Sbjct 784 AAGCTAGATCTTAATCGATAGTCTATATATATATATCTATCTATCCAT-GGCTTGATTTG 842
Query 883 ttgttt 888
| ||||
Sbjct 843 TAGTTT 848
Score = 84.2 bits (45), Expect = 2e-15
Identities = 59/65 (91%), Gaps = 4/65 (6%)
Strand=Plus/Plus
Query 919 AGTTTATACGCTATAT---TAGTGTGTTTAATATCAAAAAGGAAAACAAAAGTTTAGGGT 975
|||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||
Sbjct 844 AGTTTATACGCTATATAAATAGACTGTTT-ATATCAAAAAGGAAAACAAAAGTTTAGGGT 902
Query 976 TTGGT 980
|||||
Sbjct 903 TTGGT 907
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40448414937
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5