BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G59360.1 Length=1086 Score E Sequences producing significant alignments: (Bits) Value Ahg496063 jgi|Araly1|496063|fgenesh2_kg.8__1879__AT5G59360.1 1055 0.0 > Ahg496063 jgi|Araly1|496063|fgenesh2_kg.8__1879__AT5G59360.1 Length=907 Score = 1055 bits (571), Expect = 0.0 Identities = 759/846 (90%), Gaps = 28/846 (3%) Strand=Plus/Plus Query 54 ATTTATTAATTAGAAGTCCTTCTCATTTTACGGCCTGCATGCC-TT-GCTCCTTTGTCGA 111 |||||| |||||||||||||||||||||||| | ||||||||| || ||||| ||||||| Sbjct 20 ATTTATAAATTAGAAGTCCTTCTCATTTTACTGTCTGCATGCCTTTAGCTCCCTTGTCGA 79 Query 112 TTTGGAGGTGTCTTCGCTCTTTGTTATATACCAAGCGCACACACTCACAAATATCAAATA 171 | |||||||||| |||||||| |||||||||||||||||||||||||||||||||||| | Sbjct 80 TGTGGAGGTGTCGTCGCTCTTCGTTATATACCAAGCGCACACACTCACAAATATCAAAGA 139 Query 172 CACACACACTTAAAGATCTTAATTTCAATTTCTCTGCTCCTTATTTGCATCA-A-atata 229 |||| ||| |||||||| ||||||||||||| |||||||||||||||||| | ||||| Sbjct 140 GACACTCACACAAAGATCTCAATTTCAATTTCTTTGCTCCTTATTTGCATCATATATATA 199 Query 230 tgtaca-atgatataaacacagtcacatacatat--atacacgtataccttgatatatat 286 | || | || ||||| ||| || ||| |||||| ||||||||||||||| |||||||| Sbjct 200 TATATATAT-ATATATACA-AG-CAC--ACATATGCATACACGTATACCTTAATATATAT 254 Query 287 CGAGATCTTGTTTGTTGTTTCTGATCGATCAGTAGTCATTATTTTTTCTTTTA-AAGTTA 345 ||||||||| |||||||||||||| |||| ||||||||||||||||||||| | ||| Sbjct 255 CGAGATCTT-CTTGTTGTTTCTGAT--ATCA-TAGTCATTATTTTTTCTTTTAGTA-TTA 309 Query 346 CTCTCTCTTTTCCTGTTTGTGATAAGATGTCAAAGATTAAGATTTTTCATTTATTCCCTG 405 ||||| |||||||||||||||||||||||||||| | ||||||||||||||||||| ||| Sbjct 310 CTCTCGCTTTTCCTGTTTGTGATAAGATGTCAAATAATAAGATTTTTCATTTATTCTCTG 369 Query 406 ATGACAAAGATATTGAAGCAACGCAACAACCTGAGAGTCTCCTAGTTCCATCAAAATCC- 464 ||||||||||||| ||||| | ||||||||| |||||||||||||||||||||||| || Sbjct 370 ATGACAAAGATATCGAAGCCATGCAACAACCCGAGAGTCTCCTAGTTCCATCAAAA-CCG 428 Query 465 GACTCTCTTGATTCATCATTATCT-CGACACCACCAAGAAAATCAATCTAACAGACAACG 523 || ||| |||||||||||||||| || || || |||||| |||||||||| ||||||| Sbjct 429 GA--CTC-TGATTCATCATTATCTCCG-CATCATCAAGAAGATCAATCTAAAAGACAACA 484 Query 524 GAACCACCAACACCGACAACAAGATCAAGAACTAGAAAATCTACAAGATGGATCGAGAGG 583 ||||||||||||| |||||||||| ||||||||||||| || ||||| ||||||||||| Sbjct 485 AAACCACCAACACCAACAACAAGATGAAGAACTAGAAAAGCTCCAAGAAGGATCGAGAGG 544 Query 584 AAAACGAAAATGGGAATGTAAGGAT-GAAGAGTCTCCTGTAAAGATCCCAGAGACGCCGA 642 ||||||||||||||||||| ||||| ||| | |||| ||||||||||||||||||||||| Sbjct 545 AAAACGAAAATGGGAATGTGAGGATGGAA-ATTCTCGTGTAAAGATCCCAGAGACGCCGA 603 Query 643 GAAACTCGAACAGTGTGTGTTATTGTCCTCCTCGACCGCCGAGAAAGCCAAAAGCTATCC 702 ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| | Sbjct 604 TAAACTCGAACAGTGTGTGTTATTGTCCTCCTCGGCCGCCGAGAAAACCAAAAGCTATTC 663 Query 703 CGTCCATGAAACGGAGAGGCATGTGGGTAAAGAGATCGGTGGtttttttAGATGTAGCTA 762 || | ||||||||||||| ||||||||||||||||||||||||||||||||||||||| | Sbjct 664 CGGCGATGAAACGGAGAGCCATGTGGGTAAAGAGATCGGTGGTTTTTTTAGATGTAGCCA 723 Query 763 GAGAGGTCGAATCCATGTTTCCTCCGTCTGTTCTTCAAGATTTTGGTAAAAAGATCAAGA 822 ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 724 GAGAGGTCGAATCCATGTTTCCTCCGTCTGTTCTTGAAGATTTTAGTAAAAAGATCAAGA 783 Query 823 AAGCGAGATTTTAACCAATAGTCTATACATATATCTCTATCTATCCATAGGCTTGAtttg 882 |||| |||| |||| | |||||||||| |||||| ||||||||||||| ||||||||||| Sbjct 784 AAGCTAGATCTTAATCGATAGTCTATATATATATATCTATCTATCCAT-GGCTTGATTTG 842 Query 883 ttgttt 888 | |||| Sbjct 843 TAGTTT 848 Score = 84.2 bits (45), Expect = 2e-15 Identities = 59/65 (91%), Gaps = 4/65 (6%) Strand=Plus/Plus Query 919 AGTTTATACGCTATAT---TAGTGTGTTTAATATCAAAAAGGAAAACAAAAGTTTAGGGT 975 |||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||| Sbjct 844 AGTTTATACGCTATATAAATAGACTGTTT-ATATCAAAAAGGAAAACAAAAGTTTAGGGT 902 Query 976 TTGGT 980 ||||| Sbjct 903 TTGGT 907 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40448414937 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5