BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59380.1
Length=960
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950681 jgi|Araly1|950681|scaffold_802568.1 939 0.0
> Ahg950681 jgi|Araly1|950681|scaffold_802568.1
Length=743
Score = 939 bits (508), Expect = 0.0
Identities = 668/740 (90%), Gaps = 32/740 (4%)
Strand=Plus/Plus
Query 47 AATCCCTAATTCGTATGTCAGATTCTGTGGCCGGCGATTTCCCTCCCGATCCACTTCTCG 106
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 8 AATCCCTAATTCGTATGTCAGATTCTGTGTCCGGCGATTTTCCTCCCGATCCACTTCTCG 67
Query 107 CCTCCGGAGCCTTCATCTCCTCCGCCGGTGACGGAACCCTAGACAGTAGTGCGAAACGAC 166
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 68 CCTCCGGAGCCTTCATCTCCTCCGCCGGTGACGGAACCCTAGACAGTAGTTCGAAACGGC 127
Query 167 GACCGATTCAGGGAGGAATCGGAATTTCTGGTTCGGGAGAGAGCGTACGCATCGGGATGG 226
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 128 GGCCGATTCAGGGAGGAATCGGAGTTTCTGGTTCGGGAGAGAGCGTACGCATCGGGATGG 187
Query 227 CTAACGGCACTGATCAGGTG-A---AT---C----A--TC-AG-----A--CGGAATCGA 265
||||||| || ||||||||| | || | | || || | |||||||||
Sbjct 188 CTAACGGTACCGATCAGGTGAATCCATCGCCGGATAGTTCGAGCCATCAGGCGGAATCGA 247
Query 266 AGTCGCGGAAGCGTGCGGCGCCTGGAGATAATTGGTTGCCTCCTGGTTGGAGAGTTGAAG 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 AGTCGCGGAAGCGTGCGGCGCCTGGAGATAATTGGTTGCCTCCTGGTTGGAGAGTTGAAG 307
Query 326 ATAAGATTCGAACTTCCGGTGCCACAGCTGGTTCGGTGGATAAGTACTATTACGAACCAA 385
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 308 ATAAGATTCGAACCTCCGGTGCCACAGCTGGCTCGGTGGATAAGTACTATTACGAACCAA 367
Query 386 ATACAGG-ACGTAAGTTTCGGTCCAGGACTGAGGTGCTGTACTACTTGGAACATGGAACT 444
||||||| | | ||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 368 ATACAGGGA-GAAAGTTTCGGTCCAGGACCGAGGTACTGTACTACTTGGAACATGGAACT 426
Query 445 TCTAAAAGAGG---CACCAAGAAAGCTGAGAATACAT-ATTTCAA-TCCAGACCATTTTG 499
||||||||||| | ||||||||| ||||||||| | ||||| || ||| |||||||
Sbjct 427 TCTAAAAGAGGAGGCGCCAAGAAAGTTGAGAATAC-TGATTTCCTGTC-AGATCATTTTG 484
Query 500 AAGGCCAAGGAAGCAATAGAGTCAC-CAGAACCGCTACAGTGCCTCCACCTCCGCCACCG 558
|||| || ||||||||||||| || ||||| |||| || ||||||||| ||||||||
Sbjct 485 AAGGTCAGGGAAGCAATAGAG-CAAGCAGAAAAGCTAAAGAGCCTCCACCGCCGCCACCA 543
Query 559 CCATTGGACTTTGATTTTAAGAATCCACCAGACAAGGTAAGCTGGTCTATGGCAAACGCA 618
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 544 CCATTGGACTTTGATTTTAAGAATCCACCAGAGAAGGTAAGCTGGTCTATGGCAAACGCT 603
Query 619 GGAGAAGAAGGTTGGATACCTAATATTGGGGACGTCAAGGTTCAAGACTCAGTGAGACGA 678
|||||||||| |||| |||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 604 GGAGAAGAAGCTTGGGTACCTATTATTGGGGACGTCAAGGTTAAAGACTCAGTGAGACGA 663
Query 679 GATTGGAGCACTGCGTTTACCTTTATCACAAGCCGAAACCCTAGTAAAGTGTCGGCTTGA 738
||||||||||||||||||||||||||||||| ||||||||| |||||| ||||| ||| |
Sbjct 664 GATTGGAGCACTGCGTTTACCTTTATCACAAACCGAAACCCAAGTAAACTGTCGTCTTAA 723
Query 739 AGACTATGATGACCTGGTGG 758
|||| |||||||| ||||||
Sbjct 724 AGACGATGATGACATGGTGG 743
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35644927395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5