BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59390.1
Length=1686
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917681 jgi|Araly1|917681|Al_scaffold_0008_2432 1600 0.0
> Ahg917681 jgi|Araly1|917681|Al_scaffold_0008_2432
Length=1557
Score = 1600 bits (866), Expect = 0.0
Identities = 1126/1244 (91%), Gaps = 48/1244 (4%)
Strand=Plus/Plus
Query 1 ATGGAGAAAAATCAACAAAAGCAGGAATTTCTAGCTGAGACCTCAGAGATGAAGAACACC 60
|||||||| ||||||||||||||||||||||||||||||||||||| ||| | | | |
Sbjct 1 ATGGAGAAGAATCAACAAAAGCAGGAATTTCTAGCTGAGACCTCAGCGAT---G-A-A-C 54
Query 61 AAAAACAACGAC-G-ACTGTTC-TGTACAACAACAACAACGATTTGTGTGGCCATGGGTT 117
||||||||| | ||| | | ||||| ||||||||||||||||||||||||||||
Sbjct 55 ---AACAACGACTGTTCTGAACAAGAACAACCACAACAACGATTTGTGTGGCCATGGGTT 111
Query 118 GGTCTAGTAGCCAACATACCAACGGAGGTGGAACCATCGGGTCGGAGAGTAGGCAAAAGC 177
||||| ||||||||||||||||||||||| |||| ||| |||||||||||||||||||||
Sbjct 112 GGTCTTGTAGCCAACATACCAACGGAGGTTGAACAATCTGGTCGGAGAGTAGGCAAAAGC 171
Query 178 GGTTCAACGTTACGTGATGAGTTCACTATGAAAGGGTTTAATCCAACAAGAGTCCAACCC 237
||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 172 GGTTCTACGTTACGTGATGAGTTCACTCTGAAAGGGTTTAATCCTACAAGAGTCCAACCC 231
Query 238 ATTTGGGATTTCAAGGGTCATTCTGGTTTTGCTTTGGTTGAATTCGCTAAAGACTTT-GA 296
|||||| |||||||||| ||||||||||||||||||||||||||| ||||||| ||| ||
Sbjct 232 ATTTGGAATTTCAAGGGACATTCTGGTTTTGCTTTGGTTGAATTCACTAAAGA-TTTCGA 290
Query 297 AGGATTCGAAAGCGCCATG-AATTTCGAAAGGAGTTTT-AATTTAGACCGTCATGGGAAG 354
|||||| ||| |||||||| ||||| |||||||||||| || ||||||||||||||||
Sbjct 291 AGGATTTGAATGCGCCATGAAATTT-GAAAGGAGTTTTGAA-ACAGACCGTCATGGGAAG 348
Query 355 AGAGATTGGGAAAAAGGTCA-TCGCTTGAGAGACAATAAGCTCTATGGATGGGTTGCCAG 413
|||||||||||||| ||| | |||||||||||| |||||||| |||||||||||||| ||
Sbjct 349 AGAGATTGGGAAAATGGT-ATTCGCTTGAGAGATAATAAGCTTTATGGATGGGTTGCGAG 407
Query 414 AGAGGATGATTATAATCGAAGTGATACTGTTGGGAAGAACGTCAAGAAGAAGAGAGATTT 473
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 408 AGAGGATGATTATAATCGAAGTGATATTGTTGGGAAGAATGTCAAGAAGAAGAGAGATTT 467
Query 474 GAAAAGTATCTCT-CAGATTGTGGAGGAAGACGAGAGGAAAATGGTTCATCTTGTTGAGA 532
||||||||| | | |||||| |||| |||||||||||||||||||||||||| |||||||
Sbjct 468 GAAAAGTAT-TGTGCAGATTATGGAAGAAGACGAGAGGAAAATGGTTCATCTAGTTGAGA 526
Query 533 ATATGTCTCAAACCATTGAGAAGAAGAAGCAAAGTAAACAAGAGCTTGAACAGAAAGTTG 592
|||||||||| | ||||||| ||| |||||| |||||||||||||||||||||||||||
Sbjct 527 ATATGTCTCAGTCGATTGAGATGAATAAGCAATGTAAACAAGAGCTTGAACAGAAAGTTG 586
Query 593 ATGAGACTTCTCGTTTCTTGGAGAGTTTGGAATTGCATAACGTTCTGTTAAACAAAAACT 652
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||
Sbjct 587 ATGAGACTTCTCGTTTCCTAGAGAGTTTGGAATTGCATAACGTTCTGTTAAACAAAACCT 646
Query 653 ACCAAGAAGGGTTTCAGAAGATGCAGATGAAGATGGAAGAGTTGTATCAACAGGTTCTGG 712
||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 647 ACCAAGAAGGGATTGAGAAGATGCAGATGAATATGGAAGAGTTGTATCAACAGGTTCTGG 706
Query 713 ATGGACATGAAAAGTCTTTGGCAGAACTGGAGGCAAAGAGGGAGAAGCTTGACGAGCGTG 772
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 707 GTGGACATGAAAAGTCTTTGGCAGAACTGGAGGCAAAGAGGGAGAAGCTGGACGAGCGTG 766
Query 773 CAAGACTGATCGAGCAACGGGCTATCATAAACGAAGAAGAGATGGAAAAGTCCAGACTTG 832
|||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||
Sbjct 767 CAAGACTGATCGAGCAACGGGCAACCATAAACGAAGAAGAGATGGAAAAATCCAGACTTG 826
Query 833 AAAGAGAAATGAATCAAAAGGCTATGTGTGAGCAGAATGAAGCGAATGAGGAAGCTATGA 892
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 827 AAAGAGAAATGAATCAAAAGGCTATGTGGGAGCAGAATGAAGCGAATGAGGAAGCTATGA 886
Query 893 AGCTTGCAGAAAAGCACCAGGCAAGTAGTTC----G-TT------A-A--AA-GAG-AA- 935
| ||||||||||||||||||||||||||||| | || | | || ||| ||
Sbjct 887 AACTTGCAGAAAAGCACCAGGCAAGTAGTTCTTTAGGTTGTCTGTATATTAATGAGCAAA 946
Query 936 --G-GA-G-A-A-GCTTCATAAAAGGATAATGGAAATGGAAGCTAAGCTAAATGAAACGC 988
| || | | | |||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 947 AAGAGAAGGAGAAGCTTCATAAAAGAATAATGGAAATGGAAGCGAAGCTAAATGAAACGC 1006
Query 989 AAGAGCTGGAGTTGGAGATAGAGAAGCTGAAAGGTACTACAAATGTGATGAAGCATATGG 1048
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1007 AAGAGCTGGAGTTGGAGATAGAGAAGCTGAAAGGTACTACCAATGTAATGAAGCATATGG 1066
Query 1049 TGGGGAGTGATGGAGATAAAGATATTGTGGAGAAGATAGCCAAAACTCAGATTCAGCTTG 1108
||||||||||||||||| ||||||||||| ||||||| |||||||||||||| ||||||
Sbjct 1067 TGGGGAGTGATGGAGATGAAGATATTGTGAAGAAGATGGCCAAAACTCAGATAGAGCTTG 1126
Query 1109 ACGCTCAAGAAACGGCTCTCCATGAAAAAATGATGACTCTGGCACGAAAA-GAACGTGCA 1167
| |||| |||||||||||||||||| ||||||||||||||| || ||||| ||||||
Sbjct 1127 ATGCTCGAGAAACGGCTCTCCATGACAAAATGATGACTCTGACA-GAAAAAGAACGTATG 1185
Query 1168 ACCAACGACGAGTATCAAGACGTTCTTAAAGAGATGATTCAGGT 1211
|||||||| ||||||||||||| || ||||||||||||||||||
Sbjct 1186 ACCAACGATGAGTATCAAGACGCTCGTAAAGAGATGATTCAGGT 1229
Score = 366 bits (198), Expect = 2e-100
Identities = 224/236 (95%), Gaps = 3/236 (1%)
Strand=Plus/Plus
Query 1200 GATGATTCAGGTATGGAACGCCAATGAAGAGTTGATGAAGCAAGAGAAGATTAGAGTGAA 1259
||||| ||||||||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct 1297 GATGA-GCAGGTATGGAATGCAAATGAAGAATTGATGAAGCAAGAGAAGATTAGAGTGAA 1355
Query 1260 GAGAATGGGGCAATTAAACCCTGCACCCTTCTTGCCTGCAGTGATGAAGAAACATAAAGT 1319
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1356 GAGAATGGGGCAATTAAACCCTGAACCCTTCTTGCCTGCAGTGATGAAGAAACATAAAGT 1415
Query 1320 TACACAATCAA-AGGCAGAGAATAAGGCTATGAAGCTGTGTTCAGTGTGGGAAGCAAACA 1378
||||||||||| || |||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1416 TACACAATCAAGAG-CAGAGATTAAGGCTATGCAGCTGTGTTCAGTGTGGGAAGCAAACA 1474
Query 1379 TAGGAGATGTGCAATGGACTCCATTTAGAGTCGATGAGTCTGATGGAACACCAAAG 1434
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1475 TAGGAGATGTGCAATGGACCCCATTTAGAGTCGATGAGTCTGATGGAACAGCAAAG 1530
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63229806700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5