BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G59410.1

Length=729
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg950684 jgi|Araly1|950684|scaffold_802571.1                        676    0.0  
  Ahg496067 jgi|Araly1|496067|fgenesh2_kg.8__1883__AT5G59400.1         150    1e-35


> Ahg950684 jgi|Araly1|950684|scaffold_802571.1
Length=432

 Score =  676 bits (366),  Expect = 0.0
 Identities = 413/435 (95%), Gaps = 5/435 (1%)
 Strand=Plus/Plus

Query  129  ttttttgtttgAAAGCGAGGATGAAAGAATCGAAATCAGCCAAGCTGAATCAGCTACAAC  188
            |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||   ||
Sbjct  3    TTTTTTGTTTGAAATCGAGGATGAGAGAATCGAAATCAGCCAAGCTGAATCAGCT---AC  59

Query  189  AACAAGAGAATCACCAGAATGCTCACTTGTCTCCATCGAAATTAGCGAAATTGTTCGATC  248
            || |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  60   AAGAAGATAATCACCAGAATGTTCACTTGTCTCCATCGAAATTAGCGAAATTGTTCGATC  119

Query  249  CCGATGCTTCTTGGGACAAGGATCAATTAGGAGATGTGTTACATTGGATTCGACAAGTGG  308
            |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
Sbjct  120  CCGATGCTTCTTGGGACAAGGATCAATTGGGAGATGTGTTGCATTGGATTCGACAAGTCG  179

Query  309  TGGGATTGATCTCTGGATTGTTATGGGGCTCTATTCCACTTGTTGGAGGCATTTGGATCA  368
            |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  180  TGGGATTGATCTGTGGATTGCTATGGGGCTCTATTCCACTTGTTGGAGGCATTTGGATCA  239

Query  369  TTCTGTTTTTGGCGATATCCTCTGGGATAGTTTATGGTTACTACGCAATGATTCTCAAGG  428
            ||||||||||||| |||||||| ||||| ||||| |||||||||||||||||||||||||
Sbjct  240  TTCTGTTTTTGGCCATATCCTCAGGGATCGTTTACGGTTACTACGCAATGATTCTCAAGG  299

Query  429  TTGATGAAGAAGATTTCGGAGGCCACGCAGCTTTACTCCAAGAGGGTCTCTTTGCGTCAC  488
            |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct  300  TTGATGAAGAAGATTTCGGAGGCCACGCAGCTTTACTCCAAGAGGGTCTCTTCGCATCAC  359

Query  489  TTACTCTCTTTTTGCTCGCATGGATTCTTGTCTATAGCTTGGCACACTTCTGaaaaaaaa  548
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct  360  TTACTCTCTTTTTGCTCGCATGGATTCTTGTCTATAGCTTGGCACACTTCTGAAAAAC--  417

Query  549  GCTGAGCAACATTCT  563
            |||||||||||||||
Sbjct  418  GCTGAGCAACATTCT  432


> Ahg496067 jgi|Araly1|496067|fgenesh2_kg.8__1883__AT5G59400.1
Length=1077

 Score =  150 bits (81),  Expect = 1e-35
 Identities = 99/107 (93%), Gaps = 4/107 (4%)
 Strand=Plus/Minus

Query  624   ttttgtAAACTGTCTGAAGATAAGGCTACAAGAGACAAAA-CGTTATAGTAACAATTTTT  682
             |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| 
Sbjct  1077  TTTTGTAAACTGTCTGAAGATAAGGCTACAAGAGACAAAAACGTTATAGTAACAATTTT-  1019

Query  683   ATGAATCTTTTGAATGTTACAAAAGCTTTCTATAGTATCATTTTTAC  729
             | ||||||| || |||||||||||||||||||  ||||| |||||||
Sbjct  1018  ACGAATCTTCTGCATGTTACAAAAGCTTTCTA--GTATCCTTTTTAC  974



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26838533568


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5