BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59420.1
Length=1731
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496069 jgi|Araly1|496069|fgenesh2_kg.8__1885__AT5G59420.1 2514 0.0
> Ahg496069 jgi|Araly1|496069|fgenesh2_kg.8__1885__AT5G59420.1
Length=1572
Score = 2514 bits (1361), Expect = 0.0
Identities = 1510/1580 (96%), Gaps = 18/1580 (1%)
Strand=Plus/Plus
Query 4 Ctttt-ttttAGTCTCCCTCCGCGT---AGAAGCTTCTCCGAGACTTGTCTCTGCTTTGA 59
||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 3 CTTTTGTTTTAGTCTCCCTCCGCGTAGAAGAAGCTTCTCCGAGACTTGTCTCTGATTTGA 62
Query 60 TTGAAGAAGACGCTTGATCGAAAATTCCCTTAGATTTCGTAAAT-AGGGTTTTACAGAAG 118
|||||||||| |||||||||||||||| |||||||||| | || |||| |||| |||||
Sbjct 63 TTGAAGAAGAAGCTTGATCGAAAATTCTCTTAGATTTC-T--ATCAGGGCTTTAAAGAAG 119
Query 119 GTGAGATTACACAGAGATCGGAT-TTGCGaaaaaaaaaaaTGGGAAGTCCAAAGAAGAAC 177
||||||||||| ||||||| | | || | |||||||||||||| ||||||||||| |||
Sbjct 120 GTGAGATTACATAGAGATC-G-TGTT-C--AAAAAAAAAATGGGGAGTCCAAAGAAAAAC 174
Query 178 GAGAACAAAGGCTTCTTCGCCGCCATGACTTCTGGCTTCTCCATGTTCGGTACCGCCGTG 237
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 175 GAGAACAAAGGCTTCTTCGCCGCCATGACTTCTGGCTTCTCCATGTTCGGTAGCGCCATG 234
Query 238 TCGAGATCCGTTAACGGCG-TGCAAGGTAATGAAGGAGTTGAGGTCATAAATCCAGAAGG 296
|||||||| || ||||| | ||||||||||||||||||||||||| ||||||||||||||
Sbjct 235 TCGAGATCTGTCAACGG-GTTGCAAGGTAATGAAGGAGTTGAGGTTATAAATCCAGAAGG 293
Query 297 TGGCAAGGAAGATGCTGAAGAGGAAGCTCAGAAAGGAAGGTGGAAGGACGAGGAACGAGA 356
|||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 294 TGGCAAAGAAGATGCAGAAGAGGAAGCTCAGAAAGGACGGTGGAAGGACGAGGAACGAGA 353
Query 357 TAGTTACTGGAAGATGATGCAGAAATATATAGGTTCGGATATTACGTCAATGGTGACTCT 416
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 354 TAGTTACTGGAAGATGATGCAGAAATATATAGGTTCGGATATTACCTCAATGGTGACTCT 413
Query 417 TCCTGTTGTTATATTTGAGCCTATGACTATGCTCCAGAAGATGGCTGAGATAATGGAGTA 476
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 414 TCCTGTTGTTATATTTGAGCCTATGACTATGCTCCAGAAAATGGCTGAGATAATGGAGTA 473
Query 477 TTCTCATTTGTTGGATCAAGCAGATGAATGCGAAGATCCATACTTGCGTTTAGTATATGC 536
|||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 474 TTCTCACTTGTTGGATCAAGCAGATGAATGCGAGGATCCATACATGCGTTTAGTATATGC 533
Query 537 TTCATCATGGGCTATATCTGTTTACTATGCCTTCCAACGAACTTGGAAGCCTTTCAATCC 596
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 534 TTCATCATGGGCTGTATCTGTTTACTTTGCCTTCCAACGAACTTGGAAGCCTTTCAATCC 593
Query 597 TATTCTTGGGGAGACATATGAGATGGTCAACCATGGTGGGATTTCTTTTATTTCTGAGCA 656
||||||||| ||||||||||||||||||||||| |||||| |||| ||||||||||||||
Sbjct 594 TATTCTTGGTGAGACATATGAGATGGTCAACCACGGTGGGGTTTCATTTATTTCTGAGCA 653
Query 657 GGTTAGCCATCATCCACCAATGAGTGCTGGTCATGCCGAGAACGAGCACTTCATTTACGA 716
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 GGTTAGCCATCATCCCCCAATGAGTGCTGGTCATGCCGAGAACGAGCACTTCATTTACGA 713
Query 717 CATCACATCAAAGTTGAAAACTAAACTTTTGGGTAACTCTGTTGATGTTTACCCTGTGGG 776
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 714 CATCACATCAAAGTTGAAAACTAAACTTTTGGGTAACTCTGTTGATGTTTATCCTGTTGG 773
Query 777 AAGAACGCGTGTAACCCTCAAGAAAGATGGTGTGGTTCTGGATTTGGTGCCGCCTCTCAC 836
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 774 AAGAACGCGTGTAACCCTCAAAAAAGATGGTGTGGTTCTGGATTTGGTGCCGCCTCTCAC 833
Query 837 TAAGATTCACAATCTAATATTTGGACGAACCTGGGTTGACTCACCTGGGGAAATGGTCAT 896
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 834 TAAGATTCACAATTTAATATTTGGACGAACCTGGGTTGACTCACCCGGGGAAATGGTCAT 893
Query 897 GACAAATTTAACCACTGGAGACAAAGTTGTGCTTTATTTCCAGCCATGTGGCTGGTTCGG 956
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 894 GACAAATTTAACCACTGGAGACAAAGTTGTACTTTATTTCCAGCCATGTGGCTGGTTCGG 953
Query 957 TTCTGGCCGCTATGAAGTTGATGGCTACGTTTACAGCGCAGCTGAAGAACCGAAAATCAT 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 TTCTGGCCGCTATGAAGTTGATGGCTACGTTTACAGCGCAGCTGAAGAACCGAAAATCAT 1013
Query 1017 GATGACAGGAAAATGGAATGAGAAAATGAGCTACCAACCTTGTGATGCCGAAGGGGAACC 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 GATGACAGGAAAATGGAATGAGAAAATGAGCTACCAACCTTGTGATGCCGAAGGGGAACC 1073
Query 1077 CCTTCCAGGAACAGAGCTGAAAGAGGTGTGGCATTTGGCTGATGTCCCCAAAAACGACAA 1136
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 CCTACCAGGCACAGAGCTGAAAGAGGTGTGGCATTTGGCTGATGTCCCCAAAAACGACAA 1133
Query 1137 CTTTCAGTACACTCACTTTGCTCACAAGATAAACAGCTTCGACACAGCGCCTGCTAAGCT 1196
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 ATTTCAGTACACTCACTTTGCTCACAAGATAAACAGCTTCGACACAGCGCCTGCTAAGCT 1193
Query 1197 CTTGGCTTCAGACTCACGTATCCGTCCTGATAGATATTCCCTTGAGCAGGGTGACCTTTC 1256
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1194 CTTGGCTTCAGACTCACGTATCCGTCCTGATAGATATGCCCTTGAGCAGGGTGACCTTTC 1253
Query 1257 TAAAGCTGGTTCCGAGAAACACAGCCTTGAGGAGAGACAAAGGGCCGAAAAGAGGACCAG 1316
|||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1254 TAAAGCTGGTGCCGAGAAGCACAGCCTTGAGGAGAGGCAAAGGGCCGAAAAGAGGACCCG 1313
Query 1317 AGAGACAAAGGGACAAAAGTTCACTCCAAGATGGTTCGATCTAACGGATGAGATCACACC 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 AGAGACAAAGGGACAAAAGTTCACTCCAAGATGGTTCGATCTAACGGATGAGATCACACC 1373
Query 1377 TACTCCATGGGGAGATATTGAAGTATACCAATACAACGGGAAGTACA-ATGAACACCGAG 1435
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1374 TACTCCATGGGGAGATATTGAAGTATACCAATACAACGGGAAGTACACA-GAACACCGAG 1432
Query 1436 ACACGGCAGAGAGCTCAAGTAGTGCCTCCAACGAAACGGACCTCAAATCGATCGAGTTTA 1495
|||| ||||||||||||| ||||||||||| ||||||||||| |||||||| |||||||
Sbjct 1433 ACACATCAGAGAGCTCAAGCAGTGCCTCCAATGAAACGGACCTAAAATCGATAGAGTTTA 1492
Query 1496 ATCCTTGGCAATATGGTAATATCTCAACCGAATGAAGTAACTCTTATAGTTTAATTTGTT 1555
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||
Sbjct 1493 ATCCTTGGCAATATGGTAATATATCAACCGAATGAGGTAACTCTTATAGTTTAATATGTT 1552
Query 1556 ATCTCTATATACGAATGCTG 1575
|||||| |||||||||||||
Sbjct 1553 ATCTCTGTATACGAATGCTG 1572
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64943867725
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5