BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59440.3
Length=1177
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950687 jgi|Araly1|950687|scaffold_802574.1 1290 0.0
> Ahg950687 jgi|Araly1|950687|scaffold_802574.1
Length=835
Score = 1290 bits (698), Expect = 0.0
Identities = 791/836 (95%), Gaps = 6/836 (1%)
Strand=Plus/Plus
Query 173 GTTTTAGCTAATAAGGGCATGAAACGGATCTGCTCGGTTTCAAGTGTTCAACTTTTTTCC 232
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 3 GTTTTAGCTAATCAGGGCATGAAACGGATCTGCTCGTTTTCAAGTGTTCAACTTTTTTCT 62
Query 233 AGAAGTTTCAGAGCTTTAGCATCGCCACGTTCCTTGAACTATCCCCTGCAGTGTATCAAG 292
||||||||||||||||||||||||||||| || ||||||||||||||||||| | |||||
Sbjct 63 AGAAGTTTCAGAGCTTTAGCATCGCCACGATCTTTGAACTATCCCCTGCAGTCTCTCAAG 122
Query 293 CGTTCATCAGTTCGGATGGAGAGTAGCAACTTTTCTTCTGGTGTCAGAACCGAGAGTAGT 352
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 123 CGTTCATCAGTTCGGATGGAGAGTTGCAACTTTTCTTCTGGTGTCAGAACCGAGAGTAGT 182
Query 353 GTGAAGCCAAGAGGAGCATTGATAGTTCTAGAAGGTCTTGATCGCAGCGGGAAATCAACA 412
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 GTAAAGCCAAGAGGAGCATTGATAGTTCTAGAAGGTCTTGATCGCAGCGGGAAATCAACG 242
Query 413 CAGTGTGCTAAGCTACTCTCTTTCTTGAATGGTTTAGGACATCCGACCGAGCTCTGGAGA 472
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 243 CAGTGTGCTAAGCTACTCTCTTTCTTGGAGGGTTTAGGACATCCGACCGAGCTCTGGAGA 302
Query 473 TTCCCCGATAGAGAGACGAGTGTCGGTCAGATGATATCCGCGTATCTTTCTAATAAGTCG 532
|||||||||||||| |||||||||||||||||||||||||| || || ||||||||||||
Sbjct 303 TTCCCCGATAGAGAAACGAGTGTCGGTCAGATGATATCCGCTTACCTCTCTAATAAGTCG 362
Query 533 CAGTTAGATGATCACACAATTCATCTCCTTTTCAGCGCCAATCGTTGGGAGAAAAGGTCG 592
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 CAGTTAGATGATCACACAATTCATCTCCTTTTCAGCGCCAATCGTTGGGAGAAAAGGTCA 422
Query 593 TTGATGGAGGAAAAGCTAAAAACAGGAACTACGCTTATCGTGGATCGTTATTCGTATTCT 652
||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 423 TTGATGGAGGAAAAGCTTAAAACAGGAACTACGCTTATCGTTGATCGTTATTCATATTCT 482
Query 653 GGTGTTGCATTCTCATCAGCTAAAGGTCTCGATATCGAATGGTGCAAGGCTCCCG-AAAT 711
|||||||||||||||||||||||||||||| ||||||| ||||||||||| |||| ||||
Sbjct 483 GGTGTTGCATTCTCATCAGCTAAAGGTCTCAATATCGATTGGTGCAAGGC-CCCGGAAAT 541
Query 712 CGGGTTACTGGCTCCAGATTCTGTACTT-TACCTGGACATTTCACCTGAAAGAGCTGCTG 770
||||||||||||||||||||| ||| || ||||| |||||||||||||||||||||||||
Sbjct 542 CGGGTTACTGGCTCCAGATTCCGTA-TTGTACCTTGACATTTCACCTGAAAGAGCTGCTG 600
Query 771 AGAGAGGTGGATATGGAGATGAGAGGTATGAGCGAGTGGAGTTTCAGAAGAAAGTTGCAG 830
||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||
Sbjct 601 AGAGAGGTGGATATGGAGACGAGAGGTACGAGCGAGTGGAGTTTCAGAAAAAAGTCGCAG 660
Query 831 ACTTTTATCAAACCCTTGGCGATTCTTCATGGAAGATAATCAATGCCAG-TGATGCCATG 889
|||||||||||||||| | |||||||||||||||||||||||||| || ||| ||||||
Sbjct 661 ACTTTTATCAAACCCTACGTGATTCTTCATGGAAGATAATCAATGC-AGGTGAAGCCATG 719
Query 890 GAGGAAGTAGAGAAGAAGATTCAACAAGTGGTATTAGATCAAGTCAAAGAATGTACTGAA 949
|||||||||||||||||||||||| |||||| ||||||| |||||||||| |||||| ||
Sbjct 720 GAGGAAGTAGAGAAGAAGATTCAAGAAGTGGCATTAGATAAAGTCAAAGAGTGTACTAAA 779
Query 950 GGAAAGCCTCTGTCTCTCCTATGGTCGTCATAGAACGTTTTCGAGTCATAGCACTT 1005
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 780 GGAAAGCCTCTGTCACTCCTATGGTCGTCATAAAACGTTTTCGAGTCATAGCACTT 835
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43917600384
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5