BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59450.1
Length=2124
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496077 jgi|Araly1|496077|fgenesh2_kg.8__1893__AT5G59450.1 3005 0.0
Ahg937371 jgi|Araly1|937371|scaffold_501562.1 771 0.0
> Ahg496077 jgi|Araly1|496077|fgenesh2_kg.8__1893__AT5G59450.1
Length=2087
Score = 3005 bits (1627), Expect = 0.0
Identities = 1927/2068 (93%), Gaps = 35/2068 (2%)
Strand=Plus/Plus
Query 80 TAAAATTTGACAAAAGCTCTCAACTTTCAAACTCTGTTTCTtcatcatcatcatcatcaC 139
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 30 TAAAATTTGACAAAAGCTCTCAACTTTTAAACTCTGTTTCATCATCATCATCATCATCAC 89
Query 140 CATGGACGCCCTGCTTCAAGTTTCAGTTGATGGGTTTAGATTTGAGAACGGATCTGGATC 199
||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 90 CATGGACGCTCTTCTTCAAGTTTCAGTTGATGGGTTCAGATTTGAGAACGGATCTGGATC 149
Query 200 TTGCTGCAAACCCAGAAACAATCTCGAATCTGGGAACAATCTCTTCCCTGATTTCCACGA 259
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 150 TTGCTGCAAACCCAGAAACAATCTCGAATCTGGGAACAATCTCTTCCCCAATTTCCACGA 209
Query 260 GTCTCAGAATCAGTCTTCACCAAACGATTCACCTCCAACGGTGTGTTTGGATAACTCTCC 319
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 210 GACTCAGAATCAGTCTTCACCAAACGATTCACCTCCAACGGTGTGTTTGGATAACTCTCC 269
Query 320 TGTTCTGAAGTACATCAATGATATGTTGATGGACGAAGAAGACTTCGTAGGT-ATATCTC 378
|||||| |||||||||||||| |||||||||||||||||||| ||||||||| | |||||
Sbjct 270 TGTTCTTAAGTACATCAATGACATGTTGATGGACGAAGAAGATTTCGTAGGTGA-ATCTC 328
Query 379 GTGA-CGATTTAGCTTTACAAGCCGCTGAGAGATCCTTCTACGAGATAATTCAACAGCAA 437
| || | | ||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 329 GAGACCTA-GAAGCTTTACAAGCCGCTGAGAGATCCTTCTACGAGATACTTCAACAACAA 387
Query 438 TCTCCAGAATCTGATCAGAACACTAGCTCCTCCTCCGATCAAAACTCCGGTGACCAAGAT 497
||||||||||||||||||||| | |||| || |||||||||||||||||||||||||||
Sbjct 388 TCTCCAGAATCTGATCAGAACTCGAGCT-CT--TCCGATCAAAACTCCGGTGACCAAGAT 444
Query 498 TTCTGTTTTCCCAG--C-ACAAC------AACAGATTCATCAGCGTTGGTTTCGAGCGGA 548
||||||||||| || | ||||| |||||||||||||||||||||||||| |||
Sbjct 445 TTCTGTTTTCCAAGCACAACAACGAGTTTAACAGATTCATCAGCGTTGGTTTCGAATGGA 504
Query 549 GAATCACAGAGAAAGTACCGTCATCGGAATGATGAAGAAGATGATCTTGAGAACAATCGG 608
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 505 GAATCACAGAGAAAGTACCGTTATCGGAATGATGAAGAAGATGATCTTGAGAACAATCGG 564
Query 609 AGAAACAAACAACCAGCGATATTTGTCTCGGAGATGGAAGAGTTAGCAGTGAAGTTAGAA 668
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 565 AGAAACAAACAACCTGCGATATTTGTCTCGGAGATGGAGGAGTTAGCAGTGAAGTTCGAG 624
Query 669 CATGTGTTGTTGGTATGCAAAACGAACC------aagaagaagaagaag--aaagaa-CA 719
|||||||||||||||||||||||||||| ||||||||||||||| |||||| ||
Sbjct 625 CATGTGTTGTTGGTATGCAAAACGAACCAAGAAGAAGAAGAAGAAGAAGAAAAAGAATCA 684
Query 720 GTAATAACGAAACAGAGTAC-TCCAAACAGAGCAGGAAGAGCAAAAGGTTCATCGAACAA 778
| |||||||||||||||| | ||||||||||||||| || |||||||||||||||||||
Sbjct 685 GCAATAACGAAACAGAGT-CAACCAAACAGAGCAGGACGACCAAAAGGTTCATCGAACAA 743
Query 779 ATCAAAGACGCACAAAACTAATACCGTTGATCTACGAAGTCTCTTGACGCAATGTGCTCA 838
||| |||||||| ||||||||| |||||||||| || ||||| || ||||||||||| ||
Sbjct 744 ATCCAAGACGCAAAAAACTAATTCCGTTGATCTGCGGAGTCTGTTAACGCAATGTGCACA 803
Query 839 AGCTGTAGCGAGCTTTGACCAGAGAAGAGCTACAGATAAACTCAAGGAGATAAGAGCACA 898
|||||| || ||||||||||| |||||||| |||||||||||||| ||||||||| ||||
Sbjct 804 AGCTGTGGCAAGCTTTGACCAAAGAAGAGCAACAGATAAACTCAAAGAGATAAGATCACA 863
Query 899 CTCTTCTAGCAATGGAGATGGAACACAAAGACTAGCTTTTTACTTTGCAGAGGCGCTTGA 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 864 CTCTTCTAGCAATGGAGATGGAACACAAAGACTAGCTTTTTACTTTGCAGAGGCGCTCGA 923
Query 959 GGCACGTATCACTGGAAACATCTCACCGCCTGTTTCTAATCCGTTTCCTTCAAGCACGAC 1018
|||||||||||| ||||||||||||||||| ||||||| |||||||||||| ||||||||
Sbjct 924 GGCACGTATCACCGGAAACATCTCACCGCCGGTTTCTACTCCGTTTCCTTCTAGCACGAC 983
Query 1019 ATCGATGGTGGACATTTTGAAAGCGTACAAGCTGTTTGTTCATACTTGTCCCATCTATGT 1078
||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 984 ATCCATGGTGGACATCTTGAAGGCGTACAAGCTGTTTGTTCATACTTGTCCCATCTATGT 1043
Query 1079 AACTGATTACTTCGCTGCGAACAAATCGATTTACGAACTTGCTATGAAAGCAACTAAGCT 1138
||| |||||||| |||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 1044 AACGGATTACTTTGCTGCGAACAAATCAATCTACGAGCTTGCTATGAAAGCAACTAAGCT 1103
Query 1139 TCACATAGTTGATTTTGGAGTTCTCTACGGCTTTCAATGGCCTTGTTTGTTACGAGCTCT 1198
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1104 TCACATAGTTGATTTTGGGGTTCTCTACGGCTTTCAATGGCCTTGTTTGTTACGAGCACT 1163
Query 1199 GTCTAAACGACCGGGCGGACCACCAATGCTTCGGGTGACTGGAATCGAGCTGCCACAAGC 1258
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1164 GTCTAAACAACCGGGCGGACCACCAATGCTCCGGGTGACTGGAATCGAGCTGCCACAAGC 1223
Query 1259 GGGTTTTCGTCCTTCAGACCGCGTTGAAGAGACTGGTCGAAGACTGAAAAGGTTCTGCGA 1318
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1224 GGGTTTCCGTCCTTCAGACCGGGTTGAAGAGACTGGTCGAAGACTGAAAAGGTTCTGCGA 1283
Query 1319 TCAGTTTAATGTTCCTTTTGAGTTCAACTTCATAGCCAAAAAATGGGAAACCATCACTCT 1378
|||||| ||||| || |||||||||||||||||||| ||||||||||||| |||| |||
Sbjct 1284 TCAGTTCAATGTCCCGTTTGAGTTCAACTTCATAGCGAAAAAATGGGAAAGTATCAGTCT 1343
Query 1379 TGATGAACTTATGATCAATCCAGGAGAGACAACGGTCGTCAACTGCATTCATCGGTTACA 1438
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1344 TGATGAACTTATGATCAATCCAGAAGAGACAACGGTCGTCAATTGCATTCATCGGTTACA 1403
Query 1439 ATACACTCCTGATGAAACTGTGTCATTAGACTCTCCAAGAGACACGGTTCTGAAGCTATT 1498
||||||||| ||||||||||||||| | ||||||||||||||||||||||| ||||||||
Sbjct 1404 ATACACTCCGGATGAAACTGTGTCACTGGACTCTCCAAGAGACACGGTTCTAAAGCTATT 1463
Query 1499 CAGAGATATCAATCCTGACCTCTTTGTGTTTGCAGAGATTAACGGAATGTACAACTCTCC 1558
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1464 CAGAGATATCAATCCTGACCTCTTTGTGTTTGCAGAGATTAATGGAATGTACAACTCTCC 1523
Query 1559 TTTCTTCATGACGAGGTTCCGAGAAGCGCTTTTTCATTACTCTTCACTCTTTGACATGTT 1618
||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||
Sbjct 1524 TTTCTTCATGACGAGGTTCCGAGAAGCTCTTTTCCATTTCTCTTCACTCTTTGACATGTT 1583
Query 1619 TGACACCACAATACACGCAGAGGATGAGTACAAAAACAGGTCACTGTTGGAGAGAGAGTT 1678
||||||||||||||| ||||||||||| |||||||||||| |||||||||||| ||||||
Sbjct 1584 TGACACCACAATACAAGCAGAGGATGAATACAAAAACAGGGCACTGTTGGAGAAAGAGTT 1643
Query 1679 ACTTGTGAGAGACGCGATGAGCGTGATTTCCTGCGAGGGTGCAGAGCGGTTTGCGAGGCC 1738
||||||||||||||||||||||||||||||||||| || || ||||| |||||||||||
Sbjct 1644 GCTTGTGAGAGACGCGATGAGCGTGATTTCCTGCGAAGGCGCTGAGCGTTTTGCGAGGCC 1703
Query 1739 TGAAACCTACAAGCAATGGCGAGTTAGGATTTTGAGAGCCGGGTTTAAGCCAGCAACTAT 1798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1704 TGAAACCTACAAGCAATGGCGAGTTAGGATTTTGAGAGCCGGGTTTAAGCCAGCAACTAT 1763
Query 1799 TAGCAAACAGATCATGAAGGAGGCTAAGGAAATTGTGAGGAAACGTTACCATAGAGATTT 1858
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1764 AAGTAAACAGATCATGAAGGAGGCTAAGGAAATCGTGAGGAAACGTTACCATAGAGATTT 1823
Query 1859 TGTGATCGATAGCGATAACAATTGGATGCTTCAAGGATGGAAAGGAAGAGTCATCTATGC 1918
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1824 TGTGATCGATAGCGATAACAATTGGATGCTTCAGGGATGGAAAGGAAGAGTCATCTATGC 1883
Query 1919 TTTTTCTTGCTGGAAACCTGCTGAGAAGTTCACAAACAATAATTTAAACATCTGAAA-AA 1977
|||||||||||||||||||||||||||||| |||||||| || ||||||||| ||| ||
Sbjct 1884 TTTTTCTTGCTGGAAACCTGCTGAGAAGTTAACAAACAACCATGTAAACATCT-AAATAA 1942
Query 1978 TGTTACTTCTCAATTACATCATTTTTGTTTCCCAATGGTTTTGTAGAATATGTTTGATCC 2037
||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 1943 TGTTACTTCTCTATTACTTCATTTTTGTTTCCCAATAGTTTTGTAGAATATGTTTGATCC 2002
Query 2038 CGTGAGTGGA-T-GCA-ACTCTTTTTTCCTGCAAGTACATATTGTATTCAAATCCTTGTG 2094
| |||||||| | | | | |||||||||||||||||||||||||||||||| ||||||
Sbjct 2003 CATGAGTGGAATTG-ATA-TCTTTTTTCCTGCAAGTACATATTGTATTCAAC-CCTTGTT 2059
Query 2095 GAAATGATAAATTGTTTAATCAAAGATC 2122
||| |||||||||||||||||||||||
Sbjct 2060 TAAAAGATAAATTGTTTAATCAAAGATC 2087
Score = 54.7 bits (29), Expect = 3e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 1 GTTCACATGAACTTTCTCACCGCTTTCTT 29
|||||||||||||||||||||||||||||
Sbjct 1 GTTCACATGAACTTTCTCACCGCTTTCTT 29
> Ahg937371 jgi|Araly1|937371|scaffold_501562.1
Length=1810
Score = 771 bits (417), Expect = 0.0
Identities = 917/1151 (80%), Gaps = 64/1151 (6%)
Strand=Plus/Plus
Query 822 TTGACGCAATGTGCTCAAGCTGTAGCGAGCTTTGACCAGAGAAGAGCTACAGATAAACTC 881
|||| |||||| || |||||||| |||||||||||||||||||||||| | || ||||||
Sbjct 672 TTGATGCAATGCGCGCAAGCTGTGGCGAGCTTTGACCAGAGAAGAGCTTCTGAGAAACTC 731
Query 882 AAGGAGATAAGAGCACACTCTTCTAGCAATGGAGATGGAACACAAAGACTAGCTTTTTAC 941
||||||||||||| ||||||||||||| | || |||| ||| || ||||| | || | ||
Sbjct 732 AAGGAGATAAGAGAACACTCTTCTAGCCACGGCGATGCAACTCAGAGACTTGGTTATCAC 791
Query 942 TTTGCAGAGGCGCTTGAGGCACGTATCACTGGAAACAT--CTCACCGCCTGTTTCTAATC 999
|| || ||||||||||| || ||||| ||||||| ||| || | | || | |||
Sbjct 792 TTCGCTGAGGCGCTTGAAGCGCGTATTACTGGAACCATGACT-A-CACC----AAT-ATC 844
Query 1000 CGTTTCCTTCAAGCACG-ACATCGATGGTGGACATTTTGAAAGCGTACAAGCTGTTTGTT 1058
| | |||| || | | ||||| ||||||||||||||||| ||||||||| |||||||
Sbjct 845 TG-CTACTTCTAGTA-GAACATCAATGGTGGACATTTTGAAGGCGTACAAGGGGTTTGTT 902
Query 1059 CATACTTGTCCCATC-TATGTAACTG-ATTACTTCGCTGCGAACA-AATCGATT-TACGA 1114
|| ||||||||| | || ||| || ||| ||| |||| |||| || | ||| | ||
Sbjct 903 CAGGCTTGTCCCACCTTA-ATAA-TGTGTTATTTCACTGCAAACAGAA-CAATTGT-TGA 958
Query 1115 ACTTGCTAT-GAAAGCAACTA-AGCTTCACAT-AGTTGATTTT-GGAGTTCTCTACGGCT 1170
|||||| | |||||||| | | |||||||| | |||||||| ||| | ||||| || |
Sbjct 959 GCTTGCT-TCCAAAGCAACCACA-CTTCACATCA-TTGATTTTGGGA-TCCTCTATGGAT 1014
Query 1171 TTCAATGGCCTTGTTTGTTACGAGCTCTGTCTAAAC--GACCGGGCGGACCACCAATGCT 1228
|||| ||||||||| || ||| |||||| || |||| || | |||||||||| ||||
Sbjct 1015 TTCAGTGGCCTTGTCTGATACAAGCTCTTTCAAAACGTGA-C-ATCGGACCACCACTGCT 1072
Query 1229 TCGGGTGACTGGAATCGAGCTGCCACAAG-CGGGTTTTCGTCCTTCAGACCGCGTTGAAG 1287
|| ||||| || ||||||||||| | || | || || || || ||||| || || ||||
Sbjct 1073 CCGTGTGACAGGTATCGAGCTGCCTC-AGTCAGGCTTCCGCCCATCAGAGCGGGTAGAAG 1131
Query 1288 AGACTGGTCGAAGACTGAAAAGGTTCTGCGATC-AGTTTAATGTTCCTTTTGAGTTCAAC 1346
|||| || ||||||||||| || ||||| || | |||| || || || ||||||| ||
Sbjct 1132 AGACCGGGCGAAGACTGAAGAGATTCTGTGA-CAAGTTCAAAGTCCCGTTTGAGTACAGT 1190
Query 1347 TTCATAGCCAAAAAATGGGA-AACCATCACTCTTGATGAACTTATGATCAATCCAGGAGA 1405
|||||||||||||| ||||| || ||| ||||||||||| || |||||||| |||||
Sbjct 1191 TTCATAGCCAAAAACTGGGAGAA-CATAACTCTTGATGATCTGGTGATCAATAGTGGAGA 1249
Query 1406 GACAACGGTCGTCAACTGCATTCAT-CGGTTACAATACACTCCTGATGAAACTGTGT-CA 1463
|||||| || |||||||||| || | ||| ||||||| || ||||||||||| |||| |
Sbjct 1250 GACAACAGTTGTCAACTGCA-TCCTCCGGCTACAATATACGCCTGATGAAACCGTGTCCC 1308
Query 1464 TTAGACTCTCCAAGAGACACGGTTCTGAAGCTATTCAGAGATATCAATCCTGACCTCTTT 1523
| | |||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 1309 TCA-ACTCACCAAGAGACACGGCTCTGAAACTATTCAGAGATATCAATCCTGACCTCTTT 1367
Query 1524 GTGTTTGCAGAGATTAACGGAATGTACAACTCTCCTTTCTTCATGACGAGGTTCCGAGAA 1583
|||||||||| ||| ||||| | |||||| || || |||||| | || |||||| |||||
Sbjct 1368 GTGTTTGCAGCGATCAACGGGACGTACAATTCGCCCTTCTTCCTAACAAGGTTCAGAGAA 1427
Query 1584 GCGCTTTTTCATTACTCTTCACTCTTTGACATGTTTGACACCACAATA-CACGCAGAGGA 1642
|| || || |||| ||| |||||||||||||||| ||| |||||| || || | | || |
Sbjct 1428 GCTCTGTTCCATTGCTCATCACTCTTTGACATGTATGAGACCACATTATCA-G-A-AG-A 1483
Query 1643 TGAGTACAAAAACAGGTCACTGTTGGAGAGAGAGTTACTTGTGAGAGACGCGATGAGCGT 1702
|| ||| |||| | ||| ||||||| ||| || | | ||||| || ||||| ||
Sbjct 1484 CGA---CAATTGCAGGACCCTGGTGGAGAGGGAGCTAATCATAAGAGATGCAATGAGTGT 1540
Query 1703 GATTTCCTGCGA-GGGTGCAGAGCGGTTTGCGAGGCCTGAAACCTACAAGCAATGGCGAG 1761
||| |||| || |||| | ||||||||||| ||||| || || ||||||||||||| ||
Sbjct 1541 GATAGCCTGTGAAGGGT-CTGAGCGGTTTGCAAGGCCCGAGACATACAAGCAATGGC-AG 1598
Query 1762 -TTAGGATTTTGAGAGCCGGGTTTA-AGCCAGC-AA-CTATTAGCAAACAGATCATGAAG 1817
|||||||||| ||||||||||||| | ||||| || ||| | |||||||||| | |||
Sbjct 1599 GTTAGGATTTTAAGAGCCGGGTTTAGA-CCAGCGAAACTAA-A-CAAACAGATCGTAAAG 1655
Query 1818 GA-GGCTAAGGAAATTGTGAGGA-AACGTTACCATAGAGATTTTGTGATCGATAGCGATA 1875
|| || ||| |||| |||| | |||||||||| | |||||| |||||||| | |||||
Sbjct 1656 GACGGGAAAG-AAATAGTGAA-ACAACGTTACCACAAAGATTTCGTGATCGACAACGATA 1713
Query 1876 ACAATTGGATGCTTCAAGGATGGAAAGGAAGAGTCATCTATGCTTTTTCTTGCTGGAAAC 1935
|||| |||||| |||| || ||||||||||||||| |||||||| |||| ||||||||||
Sbjct 1714 ACAACTGGATGTTTCAGGGCTGGAAAGGAAGAGTCCTCTATGCTGTTTCCTGCTGGAAAC 1773
Query 1936 CTGCTGAGAAG 1946
||||| |||||
Sbjct 1774 CTGCTAAGAAG 1784
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79913334010
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5