BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59460.1
Length=872
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496078 jgi|Araly1|496078|fgenesh2_kg.8__1894__AT5G59460.1 1092 0.0
Ahg496077 jgi|Araly1|496077|fgenesh2_kg.8__1893__AT5G59450.1 95.3 7e-19
> Ahg496078 jgi|Araly1|496078|fgenesh2_kg.8__1894__AT5G59460.1
Length=795
Score = 1092 bits (591), Expect = 0.0
Identities = 722/782 (92%), Gaps = 22/782 (3%)
Strand=Plus/Plus
Query 92 AATTTTGGAAAGCTATAATGGCGAAGAGAGAGATTAGTAGCACTCTGAGAAATCTAAAGT 151
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 29 AATTTGGGAAAGCTATAATGGCCAAGAGAGAGATTAGTAGCACTCTGAGAAATCTAAAGT 88
Query 152 TTATGCAAAGGTCTTCTCTGAAAGTAGAGAAGAAGAAGGCTGATGAAGAAGAGCCTAATG 211
|||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 89 TTATGCAAAGGTCTGCTTTGAAAGTAGAGAAGAAGAAGGTTGATGAAGAAGAGCCTAATG 148
Query 212 GGAGTTTTCCTTCCCTTAGG-ACTGTTGCAAAGAAGTGTGTGGTCATAACAGATTGGGAT 270
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 149 GGAGTTTTCCTTCCC-AAGGCACTGTTGCAAAGAAGTGTGTGGTCATAACAGATTGGGAT 207
Query 271 CCTCAGCCAGGAGCATTGTTAGGACGCATGTCTTTTCAGTCTTTCAATCCCTCTATCGAG 330
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 208 CCTCAGCCAGGAGCATTGTTAGGACGCATGTCATTTCAATCTTTCAATCCCTCTATCGAG 267
Query 331 AAATT-ACATGAAGAGGCAATAAACGGTGGAAATCCCTCAAGCTCTAGCAGTAATGGAGG 389
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 AAATTGA-ATGAAGAGGCAATAAACGGTGGAAATCCCTCAAGCTCTAGCAGTAATGGAGG 326
Query 390 AAAAAAGTCTTTTAGTGAACCGGAGAGTTCAAAGGTTGAGCCAAGTGGGGAAACAGA-TG 448
||| |||||||||||||||||||||||||| ||||||||| ||||| |||||| || ||
Sbjct 327 AAAGAAGTCTTTTAGTGAACCGGAGAGTTCGAAGGTTGAGGCAAGTCGGGAAAT-GAATG 385
Query 449 GTGACTTGAAAAGAAAACAGTCTGAGGTAGTCTCCGAGGAACAAAACCGTCCTAACAAGT 508
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 386 GTGACTTGAAAAGAAAACAGTCTGAGGTACTCTCCGAGGAACAAAACCGTCCTAACAAGT 445
Query 509 CCCCAAGGAGCTT-TGACAAACCATCACCGAGCAATAAAAAGGGCAATGGTTTTAAGAAA 567
|||| ||||| | ||||||||||||||||||||||||||| ||||||| ||| ||||||
Sbjct 446 CCCCGAGGAG-TAGTGACAAACCATCACCGAGCAATAAAAAAGGCAATGCTTTCAAGAAA 504
Query 568 CCCAAGAGCAAGAAGGTGGACTGGAGCGTTTTGAGGCCACCAAAACCTCAAACCAAATAG 627
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 505 CCCAAGAGCAAGAAGGTGGACTGGAGCGTTGTGAGGCCACCAAAACCTCAAACCAAATAG 564
Query 628 GGTTTAAATTAGCTAACTACAGCAATCTATATGCTATTAGTT-ACATCGGTTCATATGTT 686
|||||||||||||||||| |||||| |||| ||| ||||||| |||||||||||||||||
Sbjct 565 GGTTTAAATTAGCTAACTGCAGCAACCTATTTGCCATTAGTTTACATCGGTTCATATGTT 624
Query 687 CTAGTAGATCGTTTGTTGCT-CTGTCTGTATCGTCATTCCCGTGGTGTTGCAACCCGTTG 745
||||||||||||| ||| | |||||||||| ||| | ||||||| ||||||||||
Sbjct 625 CTAGTAGATCGTTCATTG-TGCTGTCTGTAT--TCA--C--GTGGTGTCGCAACCCGTTT 677
Query 746 GATAAATTATAGCCAAAAGTTTTGAA-TTTGTTTGGGTTAAAAGTGCTCGTGTTGTCTTC 804
||||||||||||||||| ||| |||| ||| ||||||||||| |||| ||||| |||||
Sbjct 678 GATAAATTATAGCCAAAGGTTATGAACTTT-TTTGGGTTAAA--TGCTTGTGTTATCTTC 734
Query 805 GGATCTTTGATTAAACAATTTATCATTTCCACAAGGATTTGAATACAATATGTACTTGCA 864
|||||||||||| |||||||||| ||| |||||| || ||||||||||||||||||||
Sbjct 735 AGATCTTTGATTAGACAATTTATCTTTTAAACAAGGGTT-GAATACAATATGTACTTGCA 793
Query 865 GG 866
||
Sbjct 794 GG 795
> Ahg496077 jgi|Araly1|496077|fgenesh2_kg.8__1893__AT5G59450.1
Length=2087
Score = 95.3 bits (51), Expect = 7e-19
Identities = 62/67 (93%), Gaps = 1/67 (1%)
Strand=Plus/Minus
Query 806 GATCTTTGATTAAACAATTTATCATTTCCACAAGGATTTGAATACAATATGTACTTGCAG 865
||||||||||||||||||||||| ||| |||||| || |||||||||||||||||||||
Sbjct 2087 GATCTTTGATTAAACAATTTATCTTTTAAACAAGGGTT-GAATACAATATGTACTTGCAG 2029
Query 866 GAAAAAA 872
|||||||
Sbjct 2028 GAAAAAA 2022
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32290110699
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5