BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59470.1
Length=839
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950690 jgi|Araly1|950690|scaffold_802577.1 1199 0.0
> Ahg950690 jgi|Araly1|950690|scaffold_802577.1
Length=760
Score = 1199 bits (649), Expect = 0.0
Identities = 722/758 (95%), Gaps = 2/758 (0%)
Strand=Plus/Plus
Query 38 CAACTTGAGG--AGAAAACAATGGATTATCTAGGAATCGACTTGAGCTGCGCAATCGGAT 95
|||||| ||| | ||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1 CAACTTCAGGAAATAAAACAATGGATTATCTAGGAATTGATTTGAGCTGCGCAATCGGAA 60
Query 96 CTCTCCGTAACGGTGAGTTTCCGGCGAAAGATTGTCTTCTTCCTCTCATTTCAAAGCTAC 155
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 61 CTCTCCGTAACGGTGAGTTTCCGGCGAAAGATTGTCTTCTTCCTCTCATTTCAAAGCTGC 120
Query 156 TCGGTTACTTCCTCGTCGCTGCTTCAATGACCGTTAAGCTTCCTCAGATAATGAAAATCG 215
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 TCGGTTACTTCCTCGTCGCTGCTTCAATGACCGTCAAGCTTCCTCAGATAATGAAAATCG 180
Query 216 TGGACAACAAGAGTGTAAAAGGCCTAAGTGTTGTAGCATTTGAGCTTGAAGTGATTGGTT 275
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 181 TGGACAACAAGAGTGTAAAAGGCTTAAGTGTTGTAGCATTTGAGCTTGAAGTGGTTGGTT 240
Query 276 ACACAATCTCACTTGCTTACTGTCTTAACAAAGACCTTCCTTTTTCAGCTTTTGGTGAAT 335
|||||||| |||||||||| |||||||||||| | |||| ||||||||||||||||||||
Sbjct 241 ACACAATCGCACTTGCTTATTGTCTTAACAAAAAGCTTCATTTTTCAGCTTTTGGTGAAT 300
Query 336 TAGCTTTTCTTTTGATCCAAGCTTTAATCTTGGTGGCTTGTATCTACTATTTCTCACAAC 395
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 301 TAGCTTTTCTTTTGATCCAAGCTTTAATCTTGGTGGCTTGTATCTATTATTTCTCTCAAC 360
Query 396 CTCTCTCTGTAACAACTTGGGTCAAAGCAATTCTTTATTTTGCTATAGCACCAACTGTGT 455
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 361 CTCTCTCTGTAACAACTTGGGTCAAAGCAATTCTTTACTTTGCTTTAGCACCAACTGTGT 420
Query 456 TTGCTGGTAAGATTGATCCTTTTCTTTTTGAAGCTCTTTATGCTTCTAAGCATTTGATAT 515
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 421 TTGCTGGTAAGATTGATCCTTTGCTTTTCGAAGCTCTTTATGCTTCTAAGCATTTGATAT 480
Query 516 TTCTCTCTGCAAGAATCCCTCAGATTTGGAAGAACTTCAGAAACAAAAGCACTGGACAAC 575
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 481 TTCTCTCTGCAAGAATCCCTCAGATTTGGAAGAATTTCAGAAACAAAAGCACTGGACAAC 540
Query 576 TTAGTTTCTTGACTTGTCTCATGAACTTTGGTGGAGCTTTGGCGAGAGTTTTCACCAGCA 635
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 541 TTAGTTTCTTGACTTGTCTCATGAACTTTGGTGGAGCTATGGCGAGAGTTTTCACCAGCA 600
Query 636 TTCAAGAGAAGGCTCCACTTAGCATGCTTTTGGGTATTGTTCTTTCTATCTTCACCAATG 695
|||||||||||||||| |||||||||||| |||||||||||||| | |||||||||||||
Sbjct 601 TTCAAGAGAAGGCTCCCCTTAGCATGCTTATGGGTATTGTTCTTGCAATCTTCACCAATG 660
Query 696 GAATCATTATGAGTCAGATTCTTTTGTATAGAAGCAAAGGAAACGAAGATAAGCTAGTGA 755
||||||||||||||||||| ||||||||| ||||||||||||| |||||||||| |||||
Sbjct 661 GAATCATTATGAGTCAGATGCTTTTGTATCGAAGCAAAGGAAAGGAAGATAAGCAAGTGA 720
Query 756 AAAGTAAAAAGATTTCATGATATATTGTAAAAGTGATT 793
|| ||| ||||||||||||||||||||||||| ||||
Sbjct 721 AAGGTATTAAGATTTCATGATATATTGTAAAAGAGATT 758
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31032054438
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5