BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59490.1
Length=1089
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496082 jgi|Araly1|496082|fgenesh2_kg.8__1898__AT5G59490.1 1375 0.0
Ahg950692 jgi|Araly1|950692|scaffold_802579.1 795 0.0
> Ahg496082 jgi|Araly1|496082|fgenesh2_kg.8__1898__AT5G59490.1
Length=898
Score = 1375 bits (744), Expect = 0.0
Identities = 849/900 (94%), Gaps = 6/900 (1%)
Strand=Plus/Plus
Query 1 TCAAATATTTTCTCTTCTTCGTCTCTCTCACGTCTATTATTTTCTGTCATC-TTTTATTT 59
||||||||||| |||||||||| |||||||||||||||||||||| ||||| |||| |||
Sbjct 1 TCAAATATTTTATCTTCTTCGTTTCTCTCACGTCTATTATTTTCTCTCATCTTTTTTTTT 60
Query 60 GAGAACC-ACCAGATTTGCAGTTTCTGGAGAAATGGAATTTGTGAACAGCTCTCCACCAA 118
||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 61 GAGAACCAACCAGATTTGCACTTTCTGGAGAAATGGAATTTGTGAACAGCTCTTCACCAA 120
Query 119 GATATGAATGTCTCCTCTTTGATTTGGATGATACTCTTTATCCTTTAAGCTCTGGCTTAT 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 121 GATATGAATGTCTCCTCTTTGATTTGGATGATACTCTTTATCCTTTAAGCTCTGGTTTAT 180
Query 179 CAGATGCATGCTCCAACAACATTATAGAATATATGGTTGAAAAGCTTGGAATAGATGAAG 238
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 181 CAGATGCATGCACCAACAACATTATAGAATATATGGTTGAAAAACTTGGAATAGATGAAG 240
Query 239 ATGGAGTCGTTGAACTAAACCAAATTCTTTATAAGAAATATGGAACTTCAATGGCCGGTC 298
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 241 ATGGAGTCGTCGAACTAAACCAAATTCTTTACAAGAAATATGGAACTTCAATGGCTGGTC 300
Query 299 TTAAGGCGGTAGGTTATGAATTCGATAATGACGAGTACCACCGGTATGTTCATGGTAGAT 358
|||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 301 TTAAGGAGGTAGGTTATGAATTCGATAATGACGAGTACCACAGCTATGTTCATGGTAGAT 360
Query 359 TACCTTATGAAAACCTTAAACCGGACCCGGTTCTAAGGAGTCTCCTCCTTGGTCTACCTT 418
||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||
Sbjct 361 TACCTTATGAAAACCTTAAACCGGACCCGGTTCTAAGAAGTCTCCTTCTTACTCTACCTT 420
Query 419 -TGCGAAAATTGGTATTCTCGAATGGAGATGAGGTTCATGTGATGAAGGCTCTCACAAGA 477
| ||||||||||| ||||||||| | ||||| |||||||||||||||||||| | ||||
Sbjct 421 GT-CGAAAATTGGTTTTCTCGAATAGCGATGAAGTTCATGTGATGAAGGCTCTAAAAAGA 479
Query 478 CTTGGCATCGAAGATTGTTTTGAGAGAATCATAAGTTTCGAGACCTTAAACCCTGATATC 537
|| ||||| ||||| |||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 480 CTCGGCATTGAAGACTGTTTTGAAAGAATCATAAGTTTTGAGACCTTAAACCCTGAGATC 539
Query 538 AACGAAGCTGAGCTTTCTTGCGTCACAGGTCATCTTCCCGAGAATCCGGTTATTTGTAAA 597
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 540 AACGAAGCTGAGGTTTCTTGCATCACAGGTCATCTTCCCGAGAATCCGGTTATTTGTAAA 599
Query 598 CCAACTGAGATTGCTTTCGAGAAAGCCTTCGACATTGCACAGCTCAATCCTCACAAAACC 657
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 600 CCAACCGAGATTGCTTTCGAGAAAGCCTTCAACATTGCACAGCTCAATCCTCACAAAACC 659
Query 658 TTGTTCTTTGACGACAGTACCCGGAACATCCAAACCGGGAAAGCCGTTGGTCTCCATACA 717
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TTGTTCTTCGACGACAGTATCCGGAACATCCAAACCGGGAAAGCCGTTGGTCTCCATACA 719
Query 718 GTCTTGGTTGGTAAATCAGAGAAAA-TAGATGGAAGCGATTACGCGTTAGAAAGCATTCA 776
|||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||
Sbjct 720 GTCTTGGTTGGTAAATCAGA-AAAAGTAGATGGAAGTGATTACGCGTTAGAAAGCATTCA 778
Query 777 CAACATGAAAGAGGCATTCCCCGAGTTATGGTCGGAATCCATTATCAACAACAAAGAAAC 836
|||||||||||||||||| || |||||||||| |||||||| |||||||||||||||||
Sbjct 779 CAACATGAAAGAGGCATTTCCGGAGTTATGGTTGGAATCCAAAATCAACAACAAAGAAAC 838
Query 837 TGAAAGAATTGATTACGCTTCACAGATCTCGATTGAAACTTCTGTTCAAGCTTAACTTTA 896
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 839 TGAAAGAATTGATTACGCTGCACAGGTCTCGATTGAAACTTCTGTTCAAGCTTAACTTTA 898
> Ahg950692 jgi|Araly1|950692|scaffold_802579.1
Length=954
Score = 795 bits (430), Expect = 0.0
Identities = 602/684 (88%), Gaps = 16/684 (2%)
Strand=Plus/Plus
Query 219 AAAGCTTGGAATAGATGAAGATGGAGTCGTTGAACTAAACCAAATTCTTTATAAG-AAAT 277
||||||||||||||| ||||| ||| ||||||||||||||| |||| ||| || ||||
Sbjct 254 AAAGCTTGGAATAGAGGAAGACAAAGTTGTTGAACTAAACCAACTTCTCTAT-AGAAAAT 312
Query 278 ATGGAACTTCAATGGCCGGTCTTAAGGCGGTAGGTTATGAATTCGATAATGACGAGTACC 337
|||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct 313 ATGGAACTTCAATGGCTGGCCTTAAGGCTATAGGTTATGAATTCGATAATGACGAGTACC 372
Query 338 ACCGGTATGTTCATGGTAGATTACCTTATGAAAACCTTAAACCGGACCCGGTTCTAAGGA 397
| | ||||||||||| || ||||| ||||||||||||||||||||||||||||| || |
Sbjct 373 ATAGCTATGTTCATGGGAGGTTACCCTATGAAAACCTTAAACCGGACCCGGTTCTCAGAA 432
Query 398 GTCTCCTCCTTGGTCTACCTTTGCGAAAATTGGTATTCTCGAATGGAGATGAGGTTCATG 457
||| || ||| | |||||||| ||||||||||| ||||| ||||||||||| |||||||
Sbjct 433 ATCTACTTCTTAGCCTACCTTTTCGAAAATTGGTTTTCTCAAATGGAGATGATGTTCATG 492
Query 458 TGATGAAGGCTCTCACA-AGACTTGGCATCGAAGATTGTTTTGAGAGAATCATAAGTTTC 516
|| |||| ||||| | | ||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 493 TGGTGAAAGCTCT-AAAGAGACTCGGCATTGAAGACTGTTTTGAGAGAATCATAAGTTTC 551
Query 517 GAGACCTTAAACCCTGATATCAACGAAGCTG-AGCTTTCTTGCGTCACAGGTCATCTTCC 575
||||||||||||||| | | |||||| |||| || ||||||||||||||||||||||| |
Sbjct 552 GAGACCTTAAACCCTAAGACCAACGAGGCTGAAG-TTTCTTGCGTCACAGGTCATCTTTC 610
Query 576 CGAGAATCCGGTTATTTGTAAACCAACTGAGATTGCTTTCGAGAAAGCCTTCGACATTGC 635
||| |||| |||||| ||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 611 CGAAAATCTGGTTATCTGTAAACCAACCGAGATTGCTTTCGAGAAAGCCTTCGATATTGC 670
Query 636 ACAGCTCAATCCTCACAAAACCTTGTTCTTTGACGACAGTACCCGGAACATCCAAACCGG 695
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 671 ACAGCTCAATCCTCACAAATCCTTGTTCTTTGACGACAGTATCCGGAACATCCAAACCGG 730
Query 696 GAAAGCCGTTGGTCTCCATACAGTCTTGGTTGGTAAATCAGAGAAAA-TAGATGGAAGCG 754
|||| | | |||||||||||||||||||||||||||||| |||||| | ||||| || |
Sbjct 731 AAAAGTCATGGGTCTCCATACAGTCTTGGTTGGTAAATCA-AGAAAAGTGGATGGGAGTG 789
Query 755 ATTACGCGTTAGAAAGCATTCACAACATGAAAGAGGCATTCCCCGAGTTATGGTCGGAAT 814
|||||||||||||||||||||||||||||||||| ||||| || |||||||||| ||||
Sbjct 790 ATTACGCGTTAGAAAGCATTCACAACATGAAAGAAGCATTTCCGGAGTTATGGTTAGAAT 849
Query 815 CCATTATCAACAACAA-A--GA-AA--CTGAAAGAATT-GATTACGCTTCACAGATCTCG 867
||| | ||||||||| | || || || |||||||| | ||||||| ||||| |||||
Sbjct 850 CCAACAGCAACAACAACAACGAGAAATCTAAAAGAATTAG-TTACGCTGCACAGTTCTCG 908
Query 868 ATTGAAACTTCTGTTCAAGCTTAA 891
|||| |||||||||| ||||||||
Sbjct 909 ATTGCAACTTCTGTTGAAGCTTAA 932
Score = 158 bits (85), Expect = 1e-37
Identities = 104/113 (92%), Gaps = 2/113 (2%)
Strand=Plus/Plus
Query 89 AAATGGAATTTGTGAACAGCTCTC-CACCAAGATATGAATGTCTCCTCTTTGATTTGGAT 147
||| ||||||||||| || ||| | |||||||||||||||||||||||||||||||||||
Sbjct 79 AAACGGAATTTGTGACCAACTC-CACACCAAGATATGAATGTCTCCTCTTTGATTTGGAT 137
Query 148 GATACTCTTTATCCTTTAAGCTCTGGCTTATCAGATGCATGCTCCAACAACAT 200
|||||||| ||||||||||||||||| |||||||| |||||| ||||||||||
Sbjct 138 GATACTCTATATCCTTTAAGCTCTGGTTTATCAGAAGCATGCGCCAACAACAT 190
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40562783688
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5