BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59500.1
Length=1453
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496083 jgi|Araly1|496083|fgenesh2_kg.8__1899__AT5G59500.1 2148 0.0
> Ahg496083 jgi|Araly1|496083|fgenesh2_kg.8__1899__AT5G59500.1
Length=1438
Score = 2148 bits (1163), Expect = 0.0
Identities = 1340/1423 (94%), Gaps = 22/1423 (2%)
Strand=Plus/Plus
Query 1 ATCTGTTTTCCAGTTTCGATTTCGAATCAAAT-ATGAAGCTGAAAGAGTTTTTCTGAATC 59
||||||||||| |||||||||||||| ||||| | |||||||||||| ||||||||||||
Sbjct 1 ATCTGTTTTCCGGTTTCGATTTCGAAACAAATGA-GAAGCTGAAAGAATTTTTCTGAATC 59
Query 60 TTTGTCTTTGTATCCGTTATCTGAATTCTATTCGCCATGGAAGCTGTGCTTCTCTGCTCG 119
|||||| |||||||||||| |||||||| |||||||||| ||||||| ||||||||||||
Sbjct 60 TTTGTCGTTGTATCCGTTACCTGAATTCAATTCGCCATGAAAGCTGTACTTCTCTGCTCG 119
Query 120 AAGCTTGTTCCTAGAGCGGCGTCGTTGGAAGGGAACCAAAAGTTTTCGTTCAGGCATTTG 179
||| |||||||| ||||| |||||||||||| ||||| ||||||||||||||||||||||
Sbjct 120 AAGGTTGTTCCTCGAGCGACGTCGTTGGAAGAGAACCGAAAGTTTTCGTTCAGGCATTTG 179
Query 180 AACAAACACCTTAAGTGCAATTCCCTTCGTGCTGATTCCAGAGACACTCCGTTGCTCCGA 239
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
Sbjct 180 AACAAACACCTTAAGTGCAATTCGCTTCGTGCTGATTCCAGAAACACTCCGTTGCTCCAA 239
Query 240 GGTTTTGAAGCGATAAAGAGTCCGTCTATCTGGAG-TTGTGCGCCGTTCCCAGTGAGAAA 298
| |||||||| || |||||||||||| |||||| || | | ||||| |||||||||||
Sbjct 240 AGCTTTGAAGCCATTCAGAGTCCGTCTAGCTGGAGATT-TTCTCCGTTTCCAGTGAGAAA 298
Query 299 AGGTTCATGGGTTCCACCCAGATGCTCGATTTCTAGCTCGACTGTTTCCGATTCCGATAA 358
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 AGGTTCATGGGTTCCGCCCAGATGCTCGATTTCTAGCTCGACTGTTTCCGATTCCGATAA 358
Query 359 CCCTTTCCTTAGCCAATTTCGAACCTTCTCTTTTGGGTCAATGGTGAAGAAAGTTCGTGA 418
||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 359 CCCTTTCCTTAGCCATTTTCGAACCTTCTCGTTTGGGTCAGTGGTGAAGAAAGTTCGTGA 418
Query 419 GTTGAAAGTGAAGCCCATGGATGTTGTGAAGTTAACTCTTTTGCTATCGATTTTGACTGT 478
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 419 CTTGAAAGTGAAGCCGATGGATGTCGTGAAGTTAACTCTTTTGCTATCGATTTTGACTGT 478
Query 479 GGCTGCAAAAAAGACT-TTGACTTTGGTCTTGGACCCATTCTTCTGGATGTATTTTAGCT 537
|||||| |||||| | ||| |||||||||||||||||| |||||||||||||| ||||
Sbjct 479 GGCTGCGAAAAAG-GTGGTGAATTTGGTCTTGGACCCATTTTTCTGGATGTATTTCAGCT 537
Query 538 GGACATGGTTGTTCTGGCCTTGGTTTATCGCTGTGGGTCTTGCGGGTTATGGAATTTACT 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GGACATGGTTGTTCTGGCCTTGGTTTATCGCTGTGGGTCTTGCGGGTTATGGAATTTACT 597
Query 598 GTTTCCGTAAGCATTGGCTTGGCGAAGCCAATGCCTTTGAGCAGCTTGGTATTGTAACTT 657
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 598 GTTTTCGTAAGCATTGGCTTGGAGAAGCCAATGCCTTTGAGCAGCTTGGTATTGTTACTT 657
Query 658 CAGTCTTCACATGGCTAACACTTGTGCCTCCTGCTTATTTCAATGGTTATCTTGAAGGCT 717
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CAGTCTTCACATGGCTTACACTTGTGCCTCCTGCTTATTTCAATGGTTATCTTGAAGGCT 717
Query 718 GGCCTTATGTGTTCTTCTTGGCGTATCATTACTTCTTTTTCTTCAATGTTAGCGTGAGAA 777
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 718 GGCCTTATGTGTTCTTCTTGGCGTATCATTACTTCTTTTTCTTCAATGTTAGTGTGAGAA 777
Query 778 AACGCCTCTATGGAGATTTCTATGCTCGCACTCATGATCCCAAATGGGATGTGAACACGC 837
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 778 AACGCCTCTATGGAGATTACTATGCTCGCACGCATGATCCCAAATGGGATGTGAACACGC 837
Query 838 CTCTGTGGTCTCGGATTTTGTTTGGTGTTGGCATCATGGTTGGACATTGGCTTGCAGCTT 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 CTCTGTGGTCTCGGATTTTGTTTGGTGTTGGCATCATGGTTGGACATTGGCTTGCAGCTT 897
Query 898 TTGAAGGGCCTGAGCTTCACCGATTACCAGGGGGTTGGGCCAATGTAGGGATATGGATTT 957
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 898 TTGAAGGGCCTGAGCTTCACCGATTACCAGGGGCTTGGGCCAATGTAGGGATATGGATTT 957
Query 958 TGATTGTGATTACAATGCTTATGCATTATGATTCAACGCTATATCTTGCTAGATATTCTG 1017
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 958 TGATTGTGATTACAATGCTTATGCATTATGATTCAACGCTATATCTTGCTAGATATTCCG 1017
Query 1018 AAAAGGTTGTTGTTCCAACGGCTGTTGTGCAATTTGGTCCTTATAGATGGGTCAGGCATC 1077
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 AAAAAGTTGTTGTTCCAACGGCTGTTGTGCAATTTGGTCCTTATAGATGGGTCAGGCATC 1077
Query 1078 CGATATATGCTTCTACGATGCTTCTTTTCGCTGCATACTGCACTGCTCTGCGTGCGCCTT 1137
| |||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1078 CTATATATGCTTCTACTATGCTTCTTTTTGCTGCATACTGCACTGCCCTGCGTGCGCCTT 1137
Query 1138 TGAGTCTGTTGTTTCTTTTAGCGGTTTGTTTGGTTTACTACAACAAGAAGGCAAAGATGG 1197
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 1138 TGAGTCTGTTGTTTCTTTTAGCGGTGTGTTTGGTTTACTACAACAAGAAGGCAAAGCTGG 1197
Query 1198 AAGAAGAATTGATGGTGGAGAGTTTCGGACAAAGCTATTCGGATTATGCTGATAAGGTTA 1257
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 AGGAAGAATTGATGGTGGAGAGTTTCGGACAAAGCTATTCGGATTATGCTGATAAGGTTA 1257
Query 1258 GGCACAAGTTCATTCCTTTTGTTTACTAGTAG-TGGTATAGAGGAACC--TGT-GTTGTG 1313
|||||| ||||||||||||||||||||||| | | | |||||||||| ||| ||||||
Sbjct 1258 GGCACAGGTTCATTCCTTTTGTTTACTAGT-GCT--T-TAGAGGAACCAGTGTTGTTGTG 1313
Query 1314 TCTAATTTTCTGGTATCTATCAGCCAAAGA-TGTATGAATGAAGATGAGTTC--T---C- 1366
||||||| ||||||||||||||| |||| | |||||||||||||||||||| | |
Sbjct 1314 TCTAATTATCTGGTATCTATCAGTCAAACAATGTATGAATGAAGATGAGTTAAATTGTCC 1373
Query 1367 -ATTTTTATTGGAATGTTAGGCTTGTGAAAAGGATATGCTTTT 1408
||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1374 CATTTTTATTGGAATGTTAGGCTTGTGAAAAGGATATGTTTTT 1416
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54354779615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5