BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G59510.1 Length=623 Score E Sequences producing significant alignments: (Bits) Value Ahg917694 jgi|Araly1|917694|Al_scaffold_0008_2445 610 4e-174 Ahg937372 jgi|Araly1|937372|scaffold_501563.1 250 9e-66 > Ahg917694 jgi|Araly1|917694|Al_scaffold_0008_2445 Length=423 Score = 610 bits (330), Expect = 4e-174 Identities = 395/426 (93%), Gaps = 5/426 (1%) Strand=Plus/Plus Query 16 ATGGATGATGAAAATTTGTGGAAAGTTGT-GAAGAAAGATTCCATCTTCGAAACGACTCA 74 |||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||| Sbjct 1 ATGGATGATGAAAAGTTGTGGAAAGTT-TCCAAGAAAGATTCCATCTTCGAAACGACTCA 59 Query 75 TTTCTCTTCAAAACCTGTTTTTACACGAAGCTTCTCAACAAAAACTTCTTCTTCTTCTTC 134 ||||||||||||||||||||| |||||||| |||||||| |||| | |||||||||| Sbjct 60 TTTCTCTTCAAAACCTGTTTTCACACGAAGTTTCTCAAC-TAAAC--CCACTTCTTCTTC 116 Query 135 AAAACCCGTTTTCACAAGAAGTTTCTCAACTAAACCCACTTCGTATTCTTCATCAGAGCC 194 |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct 117 AAAACCCGTTTTCATACGAAGTTTCTCAACTAAACCCACTTCGTATTCTTCATCAGAGCC 176 Query 195 CATCTTTAGACGGAGTTTCTCTGCAAAACCCACTTCTTCGAAATCTCCGTTTCTATCTAG 254 |||||||||||| |||||||||||||| || || ||||||||||| |||||| ||||| Sbjct 177 CATCTTTAGACGAAGTTTCTCTGCAAAGCCTGCTCCTTCGAAATCTTTGTTTCTGTCTAG 236 Query 255 AAGCGGTTCCACGAAATGCCCTGTTGATACATCTTCTACTTCCAAGTGTTCCATCTCTCG 314 |||| ||||||||||||||| | ||||||||||||| |||||||||||||||||||||| Sbjct 237 AAGCAGTTCCACGAAATGCCAAGCTGATACATCTTCTGCTTCCAAGTGTTCCATCTCTCG 296 Query 315 GAGCTTGTCTCAGAAAGGAGCTTCGGTGACCCGAAAGTGTCGTAATATGGCCAAGGAACA 374 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 297 GAGCTTGTCACAGAAAGGAGCTTCGGTGACCCGAAAGTGTCGTAATATGGCCAAGGAGCA 356 Query 375 CAAGTCTCGGTTTTACATCATGAAACGTTGCGTTCTGATGCTCGTTTGTTGGCACAAACA 434 ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| Sbjct 357 CAAGTCTCGGTTTTACATCATGAAACGCTGCGTTTTGATGCTCGTTTGTTGGCACAAACA 416 Query 435 TGCCTG 440 |||||| Sbjct 417 TGCCTG 422 > Ahg937372 jgi|Araly1|937372|scaffold_501563.1 Length=472 Score = 250 bits (135), Expect = 9e-66 Identities = 358/460 (78%), Gaps = 38/460 (8%) Strand=Plus/Plus Query 9 TTGATTCATGGATGATGAAAATTTGTGGAAAGTTGTGAAGAAAGATTCCATC-TTCGAAA 67 |||||||||||||| |||||| | ||||| | ||||||||| ||||| ||| ||| Sbjct 14 TTGATTCATGGATGTTGAAAAGCTATGGAATCATACAAAGAAAGATGCCATCTTTC-AAA 72 Query 68 CGACTCA----T-TTC-TCTTC-AAAACCTGTTTTTACACGAAGCTTCTCAACAAAAACT 120 | ||||| | ||| ||||| ||| ||| |||| ||| |||||||||| ||||||||| Sbjct 73 CTACTCATTTCTCTTCTTCTTCTAAACCCT-TTTTCACAAGAAGCTTCTCCACAAAAACT 131 Query 121 TCTTCTTCTTCTTCA---AAA-CCCGTTTTCACAAGAAGTTTCTCAACTAAACCCACTTC 176 || |||||| ||||| ||| ||| |||||| ||||| |||||||| ||||| | || Sbjct 132 TCATCTTCTCCTTCATCCAAATCCC-ATTTCACTAGAAGCTTCTCAACAAAACCTTCGTC 190 Query 177 GTATTC---TTCATCAGAGCCCATCTTT-AGACGGAGTTTCT-CTGCAAAACCCACTTCT 231 || ||| ||| || || ||||| ||| ||||||||||||| || |||| || | || Sbjct 191 GTCTTCTTGTTCTTCCGAACCCAT-TTTCAGACGGAGTTTCTCCT-CAAAGCCTAAAGCT 248 Query 232 TCGAAATCTCCG-TTTCTATCTAGAAGCGGTTCCACGAAATGCCCTGT-TGATACATCTT 289 ||||| ||| | ||| | ||||||||| |||||||||||| || | | | || || Sbjct 249 TCGAAGTCTTTGATTT-TGTCTAGAAGCTGTTCCACGAAAT---CT-TCAGCT-GAT-TT 301 Query 290 CTACTTCCAAGTGTTC-CATCTCTCGGAGCTTGTCTCAGAAAGGAGCTTCGGTGACCCGA 348 || | ||||||| ||| | ||||| | ||||||||||||||||||||||||||||| || Sbjct 302 CT-CCTCCAAGTCTTCTC-TCTCTAGAAGCTTGTCTCAGAAAGGAGCTTCGGTGACTGGA 359 Query 349 AAGTGTCGT-AATA-TGGCCAAGGAACACAAGTCTCGGTTTTACATCATGAAACGTTGCG 406 || || | | || | | |||||||| || ||||| || || ||||| || ||||| |||| Sbjct 360 AAATG-CTTCAA-AGTCGCCAAGGAGCAGAAGTCCCGCTTCTACATAATCAAACGCTGCG 417 Query 407 TTCTGATGCTCGTTTGTTGGCACAAACATGCCTGTGATTC 446 || ||||||||||||| |||||||||||| | || ||||| Sbjct 418 TTTTGATGCTCGTTTGCTGGCACAAACATTCTTGAGATTC 457 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22797504366 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5