BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59510.1
Length=623
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917694 jgi|Araly1|917694|Al_scaffold_0008_2445 610 4e-174
Ahg937372 jgi|Araly1|937372|scaffold_501563.1 250 9e-66
> Ahg917694 jgi|Araly1|917694|Al_scaffold_0008_2445
Length=423
Score = 610 bits (330), Expect = 4e-174
Identities = 395/426 (93%), Gaps = 5/426 (1%)
Strand=Plus/Plus
Query 16 ATGGATGATGAAAATTTGTGGAAAGTTGT-GAAGAAAGATTCCATCTTCGAAACGACTCA 74
|||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1 ATGGATGATGAAAAGTTGTGGAAAGTT-TCCAAGAAAGATTCCATCTTCGAAACGACTCA 59
Query 75 TTTCTCTTCAAAACCTGTTTTTACACGAAGCTTCTCAACAAAAACTTCTTCTTCTTCTTC 134
||||||||||||||||||||| |||||||| |||||||| |||| | ||||||||||
Sbjct 60 TTTCTCTTCAAAACCTGTTTTCACACGAAGTTTCTCAAC-TAAAC--CCACTTCTTCTTC 116
Query 135 AAAACCCGTTTTCACAAGAAGTTTCTCAACTAAACCCACTTCGTATTCTTCATCAGAGCC 194
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 AAAACCCGTTTTCATACGAAGTTTCTCAACTAAACCCACTTCGTATTCTTCATCAGAGCC 176
Query 195 CATCTTTAGACGGAGTTTCTCTGCAAAACCCACTTCTTCGAAATCTCCGTTTCTATCTAG 254
|||||||||||| |||||||||||||| || || ||||||||||| |||||| |||||
Sbjct 177 CATCTTTAGACGAAGTTTCTCTGCAAAGCCTGCTCCTTCGAAATCTTTGTTTCTGTCTAG 236
Query 255 AAGCGGTTCCACGAAATGCCCTGTTGATACATCTTCTACTTCCAAGTGTTCCATCTCTCG 314
|||| ||||||||||||||| | ||||||||||||| ||||||||||||||||||||||
Sbjct 237 AAGCAGTTCCACGAAATGCCAAGCTGATACATCTTCTGCTTCCAAGTGTTCCATCTCTCG 296
Query 315 GAGCTTGTCTCAGAAAGGAGCTTCGGTGACCCGAAAGTGTCGTAATATGGCCAAGGAACA 374
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 297 GAGCTTGTCACAGAAAGGAGCTTCGGTGACCCGAAAGTGTCGTAATATGGCCAAGGAGCA 356
Query 375 CAAGTCTCGGTTTTACATCATGAAACGTTGCGTTCTGATGCTCGTTTGTTGGCACAAACA 434
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 357 CAAGTCTCGGTTTTACATCATGAAACGCTGCGTTTTGATGCTCGTTTGTTGGCACAAACA 416
Query 435 TGCCTG 440
||||||
Sbjct 417 TGCCTG 422
> Ahg937372 jgi|Araly1|937372|scaffold_501563.1
Length=472
Score = 250 bits (135), Expect = 9e-66
Identities = 358/460 (78%), Gaps = 38/460 (8%)
Strand=Plus/Plus
Query 9 TTGATTCATGGATGATGAAAATTTGTGGAAAGTTGTGAAGAAAGATTCCATC-TTCGAAA 67
|||||||||||||| |||||| | ||||| | ||||||||| ||||| ||| |||
Sbjct 14 TTGATTCATGGATGTTGAAAAGCTATGGAATCATACAAAGAAAGATGCCATCTTTC-AAA 72
Query 68 CGACTCA----T-TTC-TCTTC-AAAACCTGTTTTTACACGAAGCTTCTCAACAAAAACT 120
| ||||| | ||| ||||| ||| ||| |||| ||| |||||||||| |||||||||
Sbjct 73 CTACTCATTTCTCTTCTTCTTCTAAACCCT-TTTTCACAAGAAGCTTCTCCACAAAAACT 131
Query 121 TCTTCTTCTTCTTCA---AAA-CCCGTTTTCACAAGAAGTTTCTCAACTAAACCCACTTC 176
|| |||||| ||||| ||| ||| |||||| ||||| |||||||| ||||| | ||
Sbjct 132 TCATCTTCTCCTTCATCCAAATCCC-ATTTCACTAGAAGCTTCTCAACAAAACCTTCGTC 190
Query 177 GTATTC---TTCATCAGAGCCCATCTTT-AGACGGAGTTTCT-CTGCAAAACCCACTTCT 231
|| ||| ||| || || ||||| ||| ||||||||||||| || |||| || | ||
Sbjct 191 GTCTTCTTGTTCTTCCGAACCCAT-TTTCAGACGGAGTTTCTCCT-CAAAGCCTAAAGCT 248
Query 232 TCGAAATCTCCG-TTTCTATCTAGAAGCGGTTCCACGAAATGCCCTGT-TGATACATCTT 289
||||| ||| | ||| | ||||||||| |||||||||||| || | | | || ||
Sbjct 249 TCGAAGTCTTTGATTT-TGTCTAGAAGCTGTTCCACGAAAT---CT-TCAGCT-GAT-TT 301
Query 290 CTACTTCCAAGTGTTC-CATCTCTCGGAGCTTGTCTCAGAAAGGAGCTTCGGTGACCCGA 348
|| | ||||||| ||| | ||||| | ||||||||||||||||||||||||||||| ||
Sbjct 302 CT-CCTCCAAGTCTTCTC-TCTCTAGAAGCTTGTCTCAGAAAGGAGCTTCGGTGACTGGA 359
Query 349 AAGTGTCGT-AATA-TGGCCAAGGAACACAAGTCTCGGTTTTACATCATGAAACGTTGCG 406
|| || | | || | | |||||||| || ||||| || || ||||| || ||||| ||||
Sbjct 360 AAATG-CTTCAA-AGTCGCCAAGGAGCAGAAGTCCCGCTTCTACATAATCAAACGCTGCG 417
Query 407 TTCTGATGCTCGTTTGTTGGCACAAACATGCCTGTGATTC 446
|| ||||||||||||| |||||||||||| | || |||||
Sbjct 418 TTTTGATGCTCGTTTGCTGGCACAAACATTCTTGAGATTC 457
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22797504366
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5