BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59520.1
Length=1292
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496085 jgi|Araly1|496085|fgenesh2_kg.8__1901__AT5G59520.1 1755 0.0
> Ahg496085 jgi|Araly1|496085|fgenesh2_kg.8__1901__AT5G59520.1
Length=1252
Score = 1755 bits (950), Expect = 0.0
Identities = 1176/1278 (92%), Gaps = 44/1278 (3%)
Strand=Plus/Plus
Query 19 AAACAAACAATAACTAAAATGGCTTTGTCTTCCAAAACCCTAAAGTCAACTCTCTTCTTC 78
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 AAACAAAGAATAACTAAAATGGCTTTGTCTTCCAAAACCCTAAAGTCAACTCTCTTCCTC 60
Query 79 CTCTCTATTATTTTCCTCTGTTTCTCCTTGATCCTAGCTCACGGCGGCATAGACGACGGC 138
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTCTCTATTCTCTTCCTCTGTTTCTCCTTGATCCTAGCTCACGGCGGCATAGACGACGGC 120
Query 139 GACGAAGAAGAGGAGACCAACCAGCCACCTCCGGCCACCGGAACAACCACCGTCGTGAAT 198
||| |||||||||||||||||||||||| |||| |||||||||| |||
Sbjct 121 GAC---GAAGAGGAGACCAACCAGCCACCT-------CCGG-----CCACCGTCGTAAAT 165
Query 199 CTCCGATCGAAAAGCTTGGTGCTTGTGAAGATCTACTGTATTATAATACTCTTCTTTAGC 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 166 CTCCGATCGAAAAGCTTGGTGCTTGTGAAGATCTACTGTATTATAATACTCTTCTTTAGC 225
Query 259 ACATTCTTAGCCGGAGTTTCACCTTACTTTTACCGATGGAACGAGTCGTTTCTCCTCCTC 318
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 226 ACATTCGTAGCCGGAATTTCACCTTACTTTTACCGATGGAACGAGTCGTTTCTCCTCCTC 285
Query 319 GGAACTCAATTCTCCGGTGGTATATTCCTCGCGACCGCTCTAATCCATTTCCTCAGCGAC 378
||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct 286 GGAACTCAATTCTCCGGCGGTATATTCCTAGCCACCGCTCTAATCCATTTCCTCAGCGAC 345
Query 379 GCTAACGAGACTTTCCGAGGG-TTAAAACACAAAGAGTATCCTTACGCCTTCATGTTAGC 437
||||||||||| ||| | ||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 346 GCTAACGAGACATTCAG-GGGATTAAAACACAAAGAGTACCCTTACGCCTTCATGTTAGC 404
Query 438 AGCCGCTGGATATTGCCTTACAATGCTGGCAGATGTGGCGGTTGCGTTTGTAGCGGCTGG 497
||||||||||||||||||||||||||| |||||||||||||||||||| ||||| | |||
Sbjct 405 AGCCGCTGGATATTGCCTTACAATGCTCGCAGATGTGGCGGTTGCGTTCGTAGCAGTTGG 464
Query 498 GAGTAATAACAACCACGTCGGAGCTAGCGTCG--G-AGAGTCGAGGGAGGATGATGACGT 554
||||| ||||||||||| |||||||||||||| | ||||||||||| ||||||||| |
Sbjct 465 GAGTAGTAACAACCACGGCGGAGCTAGCGTCGTCGGAGAGTCGAGGGTGGATGATGAAGC 524
Query 555 GGCAGTGAAAGAGGAAGGACGTCGTGAGATAAAGAGTGGTGTTGATGTGAGTCAAGCGCT 614
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 525 GGCAGTGAAAGAGGAAGGACGTCGTGAGATAAAGAGTGGTGTGGATGTGAGTCAAGCGCT 584
Query 615 TATACGAACTAGTGGATTTGGAGACACAGCTTTGCTGATTTTTGCTCTTTGTTTTCACTC 674
||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 585 TATACGAACGAGTGGATTTGGAGACACAGCGTTGCTGATTTTTGCACTTTGTTTTCACTC 644
Query 675 CATCTTTGAGGGAATCGCCATTGGTCTCTCAGACACTAAAAGCGACGCTTGGAGAAACCT 734
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 645 CATCTTTGAGGGAATCGCCATTGGTCTCTCAGACACTAAAAGCGACTCTTGGAGAAACCT 704
Query 735 ATGGACAATATCGTTGCACAAGGTCTTTGCGGCCGTAGCAATGGGAATAGCTCTTCTCAA 794
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 705 ATGGACAATATCGTTGCACAAGGTCTTCGCGGCCGTAGCAATGGGAATAGCTCTCCTCAA 764
Query 795 GCTAATCCCTAAACGTCCATTCTTCCTCACTGTCGTCTACTCCTTCGCCTTTGGGATATC 854
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 765 GCTAATCCCTAAGCGTCCATTCTTTCTCACTGTCGTCTACTCCTTCGCCTTTGGGATATC 824
Query 855 GAGTCCCATAGGTGTCGGGATTGGCATAGGAATCAATGCCACTAGCCAAGGAGCTGGTGG 914
||||||||||||||| ||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 825 GAGTCCCATAGGTGTGGGGATTGGCATTGGCATCAATGCCACTAGCCAAGGAGCCGGTGG 884
Query 915 TGACTGGACCTACGCGATCTCTATGGGCCTTGCGTGTGGAGTTTTTGTGTACGTTGCGGT 974
|||||||||||| ||||||||||||||||| || ||||||||||| ||||| ||||||||
Sbjct 885 TGACTGGACCTATGCGATCTCTATGGGCCTCGCTTGTGGAGTTTTCGTGTATGTTGCGGT 944
Query 975 TAACCATCTCATCTCAAAAGGGTATAAGCCTCGTGAGGAATGTTACTTCGACAAGCCAAT 1034
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 TAACCATCTCATCTCGAAAGGGTATAAGCCTCGTGAGGAATGTTACTTCGACAAGCCAAT 1004
Query 1035 CTACAAGTTTATTGCCGTCTTCCTCGGTGTTGCTTTGCTCTCTGTTGTAATGATTTGGGA 1094
||||||||||||||| |||||||| || |||||| ||||||||||||| |||||||||||
Sbjct 1005 CTACAAGTTTATTGCTGTCTTCCTTGGCGTTGCTATGCTCTCTGTTGTTATGATTTGGGA 1064
Query 1095 TTGATTTTTGGTGATATATACTTAGTTTCAATAATTAGtttttttt-tC---C---CAA- 1146
|||||||| |||||||| |||||||||||| ||||||||||||| | | |||
Sbjct 1065 TTGATTTTAAGTGATATA--CTTAGTTTCAATCATTAGTTTTTTTTCTTTTTCTTTCAAA 1122
Query 1147 TC-CCTTTGTTCATGTTCTTCGTTTTTATTAATTTTGCAGAATTTCACAATTCAATGTA- 1204
|| |||| |||||| |||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 1123 TCTCCTT-GTTCATATTCTTCGTTTCTATTAATTTTGCAGAATTTAACAATTCAATGTAC 1181
Query 1205 --ACA--GTTGTCAAAAAAGAATGTAAACATTTATGTATACGATGTTGATATATGAATGT 1260
| | ||||| ||||| |||| |||||||||||||||||||| | | | ||||||
Sbjct 1182 GTAAACCGTTGTGAAAAA-GAATATAAACATTTATGTATACGATAT-G-T----GAATGT 1234
Query 1261 GATGAGCCACCAAGCCAC 1278
|||||| |||||||||||
Sbjct 1235 GATGAGGCACCAAGCCAC 1252
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48301735839
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5