BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59530.1
Length=1378
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917696 jgi|Araly1|917696|Al_scaffold_0008_2447 1663 0.0
Ahg496088 jgi|Araly1|496088|fgenesh2_kg.8__1904__AT5G59540.1 1267 0.0
Ahg470412 jgi|Araly1|470412|fgenesh2_kg.1__366__AT1G04350.1 806 0.0
Ahg470414 jgi|Araly1|470414|fgenesh2_kg.1__368__AT1G04380.1 745 0.0
Ahg470684 jgi|Araly1|470684|fgenesh2_kg.1__638__AT1G06650.2 272 5e-72
Ahg910348 jgi|Araly1|910348|Al_scaffold_0001_602 252 6e-66
> Ahg917696 jgi|Araly1|917696|Al_scaffold_0008_2447
Length=1095
Score = 1663 bits (900), Expect = 0.0
Identities = 1032/1097 (94%), Gaps = 4/1097 (0%)
Strand=Plus/Plus
Query 20 ATGGCCAAAAACTCTGTCGAATTCGATCGTTACATCGAGCGCAAAGCTTTCGACAATACA 79
||||||||||||||| |||| |||||||||||| |||||| ||||| |||||| | |||
Sbjct 1 ATGGCCAAAAACTCTAACGAAGTCGATCGTTACACCGAGCGAAAAGCATTCGACGAGACA 60
Query 80 AAAGAAGGTGTTAAAGGGCTCATCGATGCTAAAATCACCGAGATCCCTCGAATTTTCCAC 139
|||| |||||| ||||| |||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 61 AAAGTAGGTGTAAAAGGACTCATCGATGCTAAGATCACCGAAATCCCTCGAATCTTCCAC 120
Query 140 GTCCCTCAAGATACCTTACCAGACAAGAAACGCTCTGTTTCAGACCTAGAGATCCCTACC 199
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 GTCCCTCAAGATACCTTACCAGACAAGAAACCCTCTGTTTCAGACCTAGAGATCCCTACC 180
Query 200 ATCGACTTTGCAAGCGTCAACGTGGAC-ACACCCTCACGTGAAGCCA-TCGTGGAGAAAG 257
||||||||||||||||| |||||||| | | |||||||||| | |||| |||||||
Sbjct 181 ATCGACTTTGCAAGCGTTTACGTGGACGA-AGAGTCACGTGAAG-AAGTCGTAGAGAAAG 238
Query 258 TCAAATATGCGGTGGAGAATTGGGGATTCTTCCAGGTGATTAATCATGGTGTTCCTTTAA 317
||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 239 TCAGATATGCGGTGGAGAATTGGGGGTTCTTCCAGGTGATCAATCATGGTGTTCCTTTAA 298
Query 318 ACGTTCTTGAAGAGATTAAAGATGGGGTTCGTAGGTTTCACGAGGAAGAAGATCCTGAGG 377
|||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 299 ACGTTCTTGAGGAGATTAAAGATGGGACTCGTAGATTTCACGAGGAAGAAGATCCTGAGG 358
Query 378 TCAAGAAATCATACTACTCGCTTGATTTCACCAAGAACAAATTTGCATACAGTAGTAATT 437
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 359 TCAAGAAATCATACTACTCGCTTGATTTCACCACGAACAAATTTGCCTACAGTAGTAATT 418
Query 438 TCGATCTATATAGTTCTTCGCCGTCTCTTACTTGGAGAGATTCTATCTCTTGTTACATGG 497
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 419 TCGATCTATATAGTTCTTCGCCGTCTGTTAATTGGAGAGATTCTATCTCTTGTTACATGG 478
Query 498 CTCCTGATCCTCCAACTCCTGAGGAGCTCCCTGAGACTTGCAGGGATGCTATGATTGAAT 557
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 479 CTCCTGATCCTCCAACTCCTGAGGAACTCCCAGAGACTTGCAGGGATGCTATGATTGAAT 538
Query 558 ACTCAAAGCATGTACTGAGCTTAGGTGATTTGCTCTTTGAGCTTCTCTCAGAAGCACTAG 617
||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 539 ACTCAAAGCATGTGTTGAGTTTAGGTGATTTGCTCTTTGGGCTTCTCTCAGAAGCACTAG 598
Query 618 GTTTGAAATCTGAGATCCTTAAGAGCATGGATTGCTTGAAGAGTTTGCTTATGATCTGCC 677
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 599 GTTTGAAATCTGAGATCCTTAAGAGCATGGGTTGCTTGAAGAGTTTGCTTATGATCTGTC 658
Query 678 ATTATTATCCACCTTGTCCACAACCTGACCTAACTTTAGGAATAAGTAAACACTCAGACA 737
||||||| |||||||||||||||||||||||||||||||| |||| |||||| |||||||
Sbjct 659 ATTATTACCCACCTTGTCCACAACCTGACCTAACTTTAGGGATAACTAAACATTCAGACA 718
Query 738 ACTCTTTCCTCACAGTTCTTCTTCAAGACAACATTGGTGGTCTTCAAATTCTTCATCAAG 797
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 ACTCTTTCCTCACGGTTCTTCTTCAAGACAACATTGGTGGTCTTCAAATTCTTCATCAAG 778
Query 798 ACTCTTGGGTCGATGTCTCTCCTCTTCCTGGAGCTCTGGTAGTCAACGTCGGAGATTTCT 857
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 779 ACTCTTGGGTTGATGTCTCTCCTCTTCCTGGAGCTCTGGTAGTCAACATCGGAGATTTCT 838
Query 858 TGCAGCTGATAACCAACGATAAGTTTATAAGTGTAGAGCATAGGGTACTAGCGAATACAC 917
|||||||||||||||||||||||||| ||||||| ||||||||||| || ||||||||||
Sbjct 839 TGCAGCTGATAACCAACGATAAGTTTGTAAGTGTGGAGCATAGGGTGCTTGCGAATACAC 898
Query 918 GAGGCCCACGGATTTCTGTAGCGAGCTTTTTCAGCTCAAGTATACGTGAGAATTCAACAG 977
|||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GAGGACCAAGGATTTCAGTAGCGAGCTTTTTCAGCTCAAGTATACGTGAGAATTCAACAG 958
Query 978 TTTATGGACCGATGAAAGAGCTTGTGTCTGAAGAAAACCCTCCAAAATACAGAGACACAA 1037
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 959 TTTATGGACCAATGAAAGAGCTTGTGTCTGAAGAAAACCCTCCAAAATACAGAGATACAA 1018
Query 1038 CCTTGAGAGAATACTCAGAAGGATACTTTAAGAAAGGTCTTGATGGAACATCGCATCTGT 1097
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CTTTAAGAGAATACTCAGAAGGATACTTTAAGAAAGGTCTTGATGGAACATCGCATCTGT 1078
Query 1098 CAAATTTCAGAATATGA 1114
| |||||||| ||||||
Sbjct 1079 CGAATTTCAGGATATGA 1095
> Ahg496088 jgi|Araly1|496088|fgenesh2_kg.8__1904__AT5G59540.1
Length=1223
Score = 1267 bits (686), Expect = 0.0
Identities = 974/1112 (88%), Gaps = 23/1112 (2%)
Strand=Plus/Plus
Query 20 ATGGCCAAAAACTCTGTCGAATTCGATCGTTACATCGAGCGCAAAGCTTTCGACAATACA 79
||| |||||||||| |||||||| ||| |||||||||||| |||||||||||| | |||
Sbjct 2 ATGACCAAAAACTCCATCGAATTCCATCCTTACATCGAGCGTAAAGCTTTCGACGAGACA 61
Query 80 AAAGAAGGTGTTAAAGGGCTCATCGATGCTAAAATCAC-CGAGATCCCTCGAATTTTCCA 138
||| ||||||| ||||| ||| | || ||||||||||| | || |||| || || |||||
Sbjct 62 AAACAAGGTGTAAAAGGCCTCGTGGACGCTAAAATCACTCAAG-TCCCACGTATCTTCCA 120
Query 139 CGTCCCTCAAGATACCTT-ACCAGACAAGAAA----C-G-CTCTGTTTCAGACCTAGAGA 191
| ||||||||||| ||| ||| ||||||||| | | || |||||||||||||||||
Sbjct 121 CCACCCTCAAGATATCTTAACC-GACAAGAAACCCTCTGTCTGTGTTTCAGACCTAGAGA 179
Query 192 TCCCTACCATCGACTTTGCAAGCGTCAACGTGGACACACCCTCACGTGAAGCCATCGTGG 251
|||||| |||||| |||||||||||| ||||||||||| | |||||||||||| |||| |
Sbjct 180 TCCCTATCATCGATTTTGCAAGCGTCCACGTGGACACAGCGTCACGTGAAGCCGTCGTAG 239
Query 252 AGAAAGTCAAATATGCGGTGGAGAATTGGGGATTCTTCCAGGTGATTAATCATGGTGTTC 311
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 240 AGAAAGTCAAATATGCGGTGGAGAATTGGGGATTCTTCCAGGTGATCAATCATGGTATTC 299
Query 312 CTTTAAACGTTCTTGAAGAGATTAAAGATGGGGTTCGTAGGTTTCACGAGGAAGAAGATC 371
|||||||||||||||||||||||||||||| |||||||||||||| || | |||||||
Sbjct 300 CTTTAAACGTTCTTGAAGAGATTAAAGATGCAGTTCGTAGGTTTCATGA-G--GAAGATC 356
Query 372 CTGAGGTCAAGAAATCATACTACTCGCTTGATTTCACCAAGAACAAATTTGCATACAGTA 431
||||||||||||||| ||||| ||||| |||| | |||| || ||||||| || | |
Sbjct 357 CTGAGGTCAAGAAATTATACTTCTCGCGTGATGACGCCAATAAAAAATTTGTGTATAACA 416
Query 432 GTAA-TTTCGATCTATATAGTTCTTCGCCGTCTCTTACTTGGAGAGATTCTATCTCTTGT 490
|||| ||| |||||||| |||||||||||||| ||| ||||||||||||| ||||||||
Sbjct 417 GTAACTTT-GATCTATACGGTTCTTCGCCGTCTGTTAATTGGAGAGATTCTTTCTCTTGT 475
Query 491 TACATGGCTCCTGATCCTCCAACTCCTGAGGAGCTCCCTGAGACTTGCAGGGATGCTATG 550
||||| ||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 476 TACATAGCTCCAGATCCTCCAGCTCCTGAGGAGATCCCTGAGACTTGCAGGGATGCTATG 535
Query 551 ATTGAATACTCAAAGCATGTACTGAGCTTAGGTGATTTGCTCTTTGAGCTTCTCTCAGAA 610
|||||||||| |||||||| |||| ||||||| ||| || ||||||||||||||||||
Sbjct 536 TTTGAATACTCGAAGCATGTGTTGAGTTTAGGTGGTTTACTATTTGAGCTTCTCTCAGAA 595
Query 611 GCACTAGGTTTGAAATCTGAGATCCTTAAGAGCATGGATTGCTTGAAGAGTTTGCTTATG 670
|| |||||||||||||| |||| ||||||||||||||||||| |||||| ||||||||||
Sbjct 596 GCTCTAGGTTTGAAATCAGAGACCCTTAAGAGCATGGATTGCCTGAAGACTTTGCTTATG 655
Query 671 ATCTGCCATTATTATCCACCTTGTCCACAACCTGACCTAACTTTAGGAATAAGTAAACAC 730
|||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 656 ATCTGCCATTATTACCCACCTTGTCCACAACCTGACCTAACTTTAGGGATAACTAAACAC 715
Query 731 TCAGACAACTCTTTCCTCACAG-TTCTTCTTCAAGACAACATTGGTGGTCTTCAAATTCT 789
||||| ||||| |||||||| | ||||||| ||||||||||||||||||||||||||| |
Sbjct 716 TCAGATAACTCCTTCCTCAC-GCTTCTTCTCCAAGACAACATTGGTGGTCTTCAAATTAT 774
Query 790 TCATCAAGACTCTTGGGTCGATGTCTCTCCTCTTCC-TGGAGCTCTGGTAGTCAACGTCG 848
||||||||||||||||||||||||||||| || ||| ||||||||| || |||||| | |
Sbjct 775 TCATCAAGACTCTTGGGTCGATGTCTCTCATC-TCCATGGAGCTCTCGTCGTCAACATTG 833
Query 849 GAGATTTCTTGCAGCTGATAACCAACGATAAGTTTATAAGTGTAGAGCATAGGGTACTAG 908
|||||||||||||||||||||| |||||||||||| ||||||| ||||||||||| || |
Sbjct 834 GAGATTTCTTGCAGCTGATAACGAACGATAAGTTTGTAAGTGTGGAGCATAGGGTGCTTG 893
Query 909 CGAATACACGAGGCCCACGGATTTCTGTAGCGAGCTTTTTCAGCTCAAGTATACGT-GAG 967
| |||| || ||| ||| ||||||| ||||| |||||||||||||||||||| ||| |
Sbjct 894 CAAATAGACAAGGACCAAGGATTTCAGTAGCTAGCTTTTTCAGCTCAAGTATGCGTCCA- 952
Query 968 AATTCAACAGTTTATGGACCGATGAAAGAGCTTGTGTCTGAAGAAAACCCTCCAAAATAC 1027
||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 AATTCCAGAGTTTACGGACCGATGAAAGAGCTTGTGTCTGAAGAAAACCCTCCAAAATAC 1012
Query 1028 AGAGACACAACCTTGAGAGAATACTCAGAAGGATACTTTAAGAAAGGTCTTGATGGAACA 1087
||||||| |||| | | ||| || ||| || || ||| |||||||||| |||||||||
Sbjct 1013 AGAGACATAACCATAAAAGAGTATTCAAAAATATTTTTTGAGAAAGGTCTCGATGGAACA 1072
Query 1088 TCGCATCTGTCAAAT-TTCAGAATATGAAAAA 1118
|||||||| || || || || ||||||||||
Sbjct 1073 TCGCATCTATCGCATATT-AGGATATGAAAAA 1103
> Ahg470412 jgi|Araly1|470412|fgenesh2_kg.1__366__AT1G04350.1
Length=1324
Score = 806 bits (436), Expect = 0.0
Identities = 897/1110 (81%), Gaps = 69/1110 (6%)
Strand=Plus/Plus
Query 42 TCGA-TCGTTACA-TCGAGCGCAAAGCTTTCGACAATACAAAAGA-AGGTGTTAAAGGGC 98
|||| || ||||| | |||||||||||||||||| | |||||| | |||||| ||||| |
Sbjct 108 TCGACTC-TTACAGT-GAGCGCAAAGCTTTCGACGAGACAAAA-ACAGGTGTGAAAGGTC 164
Query 99 TCATCGATGCTAAAATCACCGAGATCCCTCGAATTTTCC-ACGTCCCTCAAGAT-AC--C 154
| | |||||| | ||||| ||||| |||||||| |||| | ||||||||| | | |
Sbjct 165 TTGTTGATGCTCACATCACTGAGATTCCTCGAATCTTCCGTC-TCCCTCAAGGTGTCTTC 223
Query 155 TTA-CCAGACAAG-AAA---C-G-CTCTGTTTCAGACCTAGAGATCCCTACCATCGACTT 207
||| || |||||| ||| | | ||||| || || | | |||||||| |||||||||
Sbjct 224 TTATCC-GACAAGAAAACTTCTGTCTCTGCCTCGGATTTTGCGATCCCTATCATCGACTT 282
Query 208 TGCAAGCGTCAACGTGGACACAC-CCTCACGTGAAGCCATCGTGGAGAAAG-TCAAATAT 265
|| ||| | | | | | ||| ||| ||||||| ||||| || ||| ||||| |
Sbjct 283 TG-AAG-G-C--C-T---C-CACGTCTCGCGTGAAGATATCGTCAAG-AAGATCAAAGA- 330
Query 266 GCGGTGGA--GAATTGGGGATTCTTCCAGGTGATTAATCATGGTGTTCCTTTAAACGTTC 323
|| || | |||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 331 -CGCTGCATCCAATTGGGGGTTTTTCCAGGTGATTAATCATGGTGTTCCTTTAAACGTTC 389
Query 324 TTGAAGAGATTAAAGATGGGGTTCGTAGGTTTCACGAGGAAGAAGATCCTGAGGTCAAGA 383
||||||||||| |||| || |||||||||||||| || | |||||||||||||| ||||
Sbjct 390 TTGAAGAGATTCAAGAAGGAGTTCGTAGGTTTCATGA--A-GAAGATCCTGAGGTTAAGA 446
Query 384 -AATCATACTACTCGCTTGATTTCACCAAGAACAAATTTG-CATACAGTAGTAATTTCGA 441
|| | |||| | | | |||| | | || || | |||| | |||| |||||| |||||
Sbjct 447 TAA-CTTACTTCACCCGTGATGCCGCTAA-AAGA--TTTGTC-TACAATAGTAACTTCGA 501
Query 442 TCTATATAGTTCTTCGCCGTCTCTTA-CTTGGAGAGATTC-TATCTCTTGTTACATGGCT 499
||| || || ||||| | | | ||| || ||||||| || | || ||||||||||||||
Sbjct 502 TCTCTACAGGTCTTCTTCATGTGTTAACT-GGAGAGACTCGT-TCGCTTGTTACATGGCT 559
Query 500 CCTGATCCTCCAA-CTCCTGAGGAGCTCCCTGAGACTTGCAGGGATGCTATGATT-GAAT 557
||||||||||||| | |||||||| ||||| | | ||||||||||||||||| || ||||
Sbjct 560 CCTGATCCTCCAAAC-CCTGAGGAACTCCCAGTGGCTTGCAGGGATGCTATG-TTCGAAT 617
Query 558 ACTCAAAGCATGT-ACTGAGCTTAGGTGATTTGCTCTTTGAGCTTCTCTCAGAAGCACTA 616
||||||||||| | | |||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 618 ACTCAAAGCATATGA-TGAGATTAGGTGATTTGCTCTTTGAGCTTCTCTCAGAAGCTCTT 676
Query 617 GGTTTGAAATCTGAGATCCTTAAGAGCATGGATTGCTTGAAGAGTTTGCTTATGATCTGC 676
||||||| |||||| | |||||||||||||||||| ||||| |||||||| || |||||
Sbjct 677 GGTTTGAGATCTGATAAGCTTAAGAGCATGGATTGCATGAAGGGTTTGCTTTTGCTCTGC 736
Query 677 CATTATTATCCACCTTGTCCACAACCTGACCTAACTTTAGGAATAAGTAAACACTCAGAC 736
||||||||||| || |||||||||||||| |||||| | || | || ||| || ||||||
Sbjct 737 CATTATTATCCTCCATGTCCACAACCTGATCTAACTATCGGCACAAATAATCATTCAGAC 796
Query 737 AACTCTTTCCTCACAGTTCTTCTTCAAGAC-AACATTGGTGGTCTTCAAATTCTTCATCA 795
|| || ||||||||| |||||||||| ||| || || |||||||||||||||| ||||||
Sbjct 797 AATTCCTTCCTCACAATTCTTCTTCAGGACCAA-ATCGGTGGTCTTCAAATTCATCATCA 855
Query 796 AGACTCTTGGGTCGATGTCTCTCCTCTTCCTGGAGCTCTGGT-AGTCAACGTCGGAGATT 854
|||| ||||||||||||||||||| |||| || ||||| || | ||||| | |||||||
Sbjct 856 GGACTGTTGGGTCGATGTCTCTCCTATTCCAGGGGCTCTAGTCA-TCAACATGGGAGATT 914
Query 855 TCTTGCAGCTGATAACCAACGATAAGTTTATAAGTGTAGAGCATAGGGTACTAGCGAATA 914
|||||||||| ||||| || || ||||| |||||||| ||||||||||| |||||||| |
Sbjct 915 TCTTGCAGCTAATAACGAATGACAAGTTCATAAGTGTGGAGCATAGGGTGCTAGCGAACA 974
Query 915 ---CA-CGAGGCCCACGGATTTCTGTAGCGAGCTTTTTCAGCTCAAGTATACGTGAGAAT 970
|| | | || | |||| || |||||||||||||||||| ||||||| | | ||||
Sbjct 975 GGGCAGCTACACCGA-GGATATCAGTAGCGAGCTTTTTCAGCACAAGTATGCTTCCGAAT 1033
Query 971 TCAACAGTTTATGGACCGATGAAAGAGCTTGTGTCTGAAGAAAACCCTCCAAAATACAGA 1030
||||| ||||| ||||| || || ||| || | |||||||||||||||||||||||||||
Sbjct 1034 TCAACTGTTTACGGACCAATCAAGGAGATTCTCTCTGAAGAAAACCCTCCAAAATACAGA 1093
Query 1031 GACA-CAACCTTGAGAGAATACTCAGAAGGATACTTTAAGAAAGGTCTTGATGGAACATC 1089
| || | || || | ||||||| |||| || |||| |||||||| || |||||||||||
Sbjct 1094 GTCATCGAC-TTAAAAGAATACACAGAGGGGTACTACAAGAAAGGCCTCGATGGAACATC 1152
Query 1090 GCATCTGTCAAATTTCA-GAATATGAAAAA 1118
| ||||||| ||| || || |||||||||
Sbjct 1153 GTATCTGTCGCATTACAAGA-TATGAAAAA 1181
> Ahg470414 jgi|Araly1|470414|fgenesh2_kg.1__368__AT1G04380.1
Length=1241
Score = 745 bits (403), Expect = 0.0
Identities = 744/902 (82%), Gaps = 49/902 (5%)
Strand=Plus/Plus
Query 233 TCACGTGAAGCCATCGTGGAGAAAG-TCAAATATGCGGTGGAGAATTGGGGATTCTTCCA 291
|||||||||||| | |||||| ||| ||||| | || | ||||| |||||| |||||||
Sbjct 189 TCACGTGAAGCCGTTGTGGAG-AAGATCAAAGACGCTGCAGAGAAGTGGGGAATCTTCCA 247
Query 292 GGTGATTAATCATGGTGTTCCTTTAAACGTTCTTGAAGAGATT-AAAGATGGGGTTCG-T 349
|||||| || ||||||||||||| || ||||||||||||||| ||| |||| ||| | |
Sbjct 248 GGTGATCAACCATGGTGTTCCTTCAAGTGTTCTTGAAGAGATTCAAA-ATGGAGTT-GTT 305
Query 350 AGGTTTCACGAGGAAGAAGATCCTGAGGTCAAGAAATCATACTACTCGCTTGATTTCACC 409
|||||||| || | |||||||||||||| |||||||| |||| ||||||||| |||| |
Sbjct 306 AGGTTTCATGA-G--GAAGATCCTGAGGTTAAGAAATCTTACTTCTCGCTTGACTTCA-C 361
Query 410 AAGAACAAATTT-GCATA-CAGTAGTAATTTCGATCTATATAGTTCTTCGCCGTCT-CTT 466
|| || | ||| | || || | ||||||||| || || ||||| | | | || |
Sbjct 362 AA-AA-ACTTTTATC-TACCA-CAATAATTTCGAACTGTACAGTTCGT--CTG-CTGGTA 414
Query 467 ACTTGGAGAGATTCTATCTCTTGTTACATGGCTCCTGATCCTCC-AACTCCTGAGGAGCT 525
|| |||||||| ||| || ||||||||||||||||||||||||| ||| |||||||| ||
Sbjct 415 AC-TGGAGAGACTCTTTCGCTTGTTACATGGCTCCTGATCCTCCAAAC-CCTGAGGATCT 472
Query 526 CCCTGAGACTTGCAGGGATGCTATGATTGAATACTCAAAGCATGT-ACTGAGCTTAGGTG 584
||| | | ||||||||||||||||||| | ||||||||||||||| | ||| ||||||||
Sbjct 473 CCCAGTGGCTTGCAGGGATGCTATGATCGGATACTCAAAGCATGTGA-TGAACTTAGGTG 531
Query 585 ATTTGCTCTTTGAGCTTCTCTCAGAAGCACTAGGTTTGAAATCTGAGATCCTTAAGAGCA 644
|||||||||||| |||||||||||||| || ||||||| |||||| ||| ||||| |
Sbjct 532 GTTTGCTCTTTGAACTTCTCTCAGAAGCTCTTGGTTTGAGCTCTGAGGCCCTAAAGAGTA 591
Query 645 TGGATTGCTTGAAGAGTTTGCTTATGATCTGCCATTATTATCCACCTTGTCCACAACCTG 704
||| |||| ||||| |||||| |||||||||||||||||| ||||| |||||| ||||||
Sbjct 592 TGGGTTGCATGAAGGGTTTGCATATGATCTGCCATTATTACCCACCATGTCCAGAACCTG 651
Query 705 ACCTAACTTTAGGAATAAGTAAACACTCAGACAAC-TCTTTCCTCA-CAGTTCTTCTTCA 762
||||||||||||| | |||| | ||||| |||||| |||| ||| || ||||||||||
Sbjct 652 ACCTAACTTTAGGCACAAGTCAGCACTCCGACAACACCTTT-ATCACCA-TTCTTCTTCA 709
Query 763 AGACAACATTGGTGGTCTTCAAATTCTTCATCAAGACTCTTGGGTCGATGTCTCTCCTCT 822
||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 710 GGACAACATTGGTGGTCTTCAAATTCTTCATCAAGACTGTTGGGTCGATGTCTCGCCTCT 769
Query 823 TCCTGGAGCTCTGGT-AGTCAACGTCGGAGATTTCTTGCAGCTGATAACCAACGATAAGT 881
||| || ||||| || | ||||| | |||||||||||||||||||| || ||||| ||||
Sbjct 770 TCCCGGGGCTCTTGTCA-TCAACATAGGAGATTTCTTGCAGCTGATGACGAACGACAAGT 828
Query 882 TTATAAGTGTAGAGCATAGGGTACTAGCGAATACACGA-GGCCC-ACGGATTTCTGTAGC 939
| ||||| || || |||||||| || || |||| | | || || | ||||||| | ||
Sbjct 829 TCATAAGCGTTGAACATAGGGTGCTTGCAAATAAA-GTTGGACCGA-GGATTTCAATCGC 886
Query 940 GAGCTTTTTCAGCTCAAGTAT-ACGTG-AGAATTCAACAGTTTATGGACCGATGAAAGAG 997
| ||||||||||||| ||||| | | | ||||| |||||||| ||||| || ||||||
Sbjct 887 GTGCTTTTTCAGCTCGAGTATGAA-TCCA-AATTCCACAGTTTACGGACCAATCAAAGAG 944
Query 998 CTTGTGTCTGAAGAAAACCCTCCAAAATACAGAGACA-CAACCT-TGAG-AGAATACTCA 1054
||| | ||||||||||||||||||||||||||| || || | | | | ||| ||||||
Sbjct 945 CTTCTCTCTGAAGAAAACCCTCCAAAATACAGAAACTTCA-C-TGT-ACCAGAGTACTCA 1001
Query 1055 GAAGG-ATACTTTAAGAAAGGTCTT-GATGGAACATCGCATCTGTCAAATTTCAGAATAT 1112
|||| |||| || |||||||| || ||||||||||||||||||||| ||| ||| ||||
Sbjct 1002 -AAGGGATACATTGAGAAAGGT-TTAGATGGAACATCGCATCTGTCACATTACAGGATAT 1059
Query 1113 GA 1114
||
Sbjct 1060 GA 1061
> Ahg470684 jgi|Araly1|470684|fgenesh2_kg.1__638__AT1G06650.2
Length=1339
Score = 272 bits (147), Expect = 5e-72
Identities = 601/811 (74%), Gaps = 68/811 (8%)
Strand=Plus/Plus
Query 272 GAGAATTGGGGATTCTTCCAGGTGATTAATCATGGTG-TTC-CTTTAAACGTTCTTGAAG 329
||||| ||||| |||||||||||||| || ||||| | ||| | || | | |||||| ||
Sbjct 341 GAGAAGTGGGGTTTCTTCCAGGTGATCAACCATGGAGTTTCGC-TTGATC-TTCTTG-AG 397
Query 330 -AGATTAAAGATGGGGTTCGTAG-GTTTCACGAGGAAGAAGATCCTGAGGTCAAGAAATC 387
|||| |||||||| |||||| | |||||||| | || ||||| || | ||||
Sbjct 398 AAGATGAAAGATGGAGTTCGT-GATTTTCACGA-G--CAATCCCCTGAAGTGAGGAAAGA 453
Query 388 ATAC--TACTCGCTTGATTTCACCAAGAACAAATT-TGCATACAGTAGTAATTTCGATCT 444
|| | || |||| ||||||| | |||| || || || | ||||||||||||||
Sbjct 454 ATTCTATAGTCGC--GATTTCAGC-AGAA-GGTTTCTGTATTTA--AGTAATTTCGATCT 507
Query 445 ATAT-AGTTCTTCGCCGTCT-CTTACTTGGAGAGATTCTATCTCTTGTTAC-ATGGCTCC 501
| | ||||| || | | || | | ||||||||| || ||||||| ||| ||||||||
Sbjct 508 CT-TCAGTTC-TC-CAG-CTGC-AAATTGGAGAGACACTTTCTCTTG-TACTATGGCTCC 561
Query 502 TGATCCTCCAACTCCTGAGGAGCTCCCTGAGACTTGCAGGGATGCTATGATTGAATACTC 561
||| |||||| || |||| || || |||| ||| ||||||| |||||| ||||||||
Sbjct 562 AGATACTCCAAAACCACAGGATCTTCCGGAGATTTGTAGGGATGTTATGATGGAATACTC 621
Query 562 AAAGCATGT-ACTGAGCTTAGGT-GATTTGCTCTTTGAGCTTCTCTCAGAAGCACTAGGT 619
|||||| || | ||| || ||| |||| |||||||||||| | |||||||| |||||
Sbjct 622 AAAGCAAGTGA-TGATTTTGGGTAAATTT-CTCTTTGAGCTTTTATCAGAAGCTCTAGGG 679
Query 620 TTGAAATCTGAGAT--CCTTAA-GAGCATGGATTGCTTGAAGAGTTTGCTTATGATCTGC 676
||| || || | || ||| || || ||| ||||||| ||| ||||||| ||| ||| |
Sbjct 680 TTGGAACCT-A-ATCACCTCAATGA-CATAGATTGCTCCAAGGGTTTGCTCATGCTCTCC 736
Query 677 CATTATTATCCACCTTGTCCACAACCTGACCTAACTTTAGGAATAAGTAAACACTCAGAC 736
||||| || ||||| |||||| | ||||||||||||||||| | |||| | ||||| |||
Sbjct 737 CATTACTACCCACCGTGTCCAGAGCCTGACCTAACTTTAGGCACAAGTCAGCACTCCGAC 796
Query 737 AACTCTTTCCTCACAGTTCTTCTTCAAGA-CAACATTGGTGGTCTTCAAATTCTTCATC- 794
|||||||| || || || ||||| | || | | || | || ||||| ||| || |
Sbjct 797 AACTCTTTTCTTACCGTCCTTCTCCCCGATC-AGATCGAAGGGCTTCAGGTTCGTC-GCG 854
Query 795 AAGACT-CTTGGGTCGATG-TCTCTCCTCTTCCTGGAGCTCTGGT-AGTCAACGTCGGAG 851
| | | | ||| |||||| || ||| | |||| || ||||| | | ||||| | ||||
Sbjct 855 ATGGGTAC-TGGTTCGATGTTC-CTCATGTTCCCGGCGCTCTAATCA-TCAACATTGGAG 911
Query 852 AT-TTCTTGCAGCTGATAACCAACGATAAGTTTATAAGTGTAGAGCATAGGGTACTAGCG 910
|| || || ||||| ||||| ||||| || || || ||| | |||||||| ||| | |||
Sbjct 912 ATCTT-TTACAGCTTATAACAAACGACAAATTCATCAGTTTGGAGCATAGAGTATTGGCG 970
Query 911 AATACA-CG--AGGCCCACGGA-TTTCTGTAGCGA-GCTTT-TTCAGC-TC-AAGT-ATA 961
|| | | || | | | | || | ||||| || | | ||| || | | | ||| | |
Sbjct 971 AACAGAGCGACAAGAGCTC-GAGTGTCTGTCGC-ATG-TTTCTTTACCACCGGAGTCAGA 1027
Query 962 CGTGAGAATTCAACAGTTTATGGACCGATGAAAGAGCTTGTGTCTGAAGAAAACCCTCCA 1021
| | | || | | ||| || |||||||| | ||||||||||||||||||||||||||||
Sbjct 1028 C-CG-G-ATCCTAGAGTGTACGGACCGATTAGAGAGCTTGTGTCTGAAGAAAACCCTCCA 1084
Query 1022 AAATACAGAGACACAACC-TTGAGAGAATAC 1051
|| |||||||| || ||| || ||||| |||
Sbjct 1085 AAGTACAGAGAGACCACCATT-AGAGAGTAC 1114
> Ahg910348 jgi|Araly1|910348|Al_scaffold_0001_602
Length=1107
Score = 252 bits (136), Expect = 6e-66
Identities = 589/798 (74%), Gaps = 70/798 (9%)
Strand=Plus/Plus
Query 274 GAATTGGGGATTCTTCCAGGTGATTAATCATGGTG-TTC-CTTTAAACGTTCTTGAAG-A 330
||| ||||| |||||||| |||||||| ||||| | ||| | | | | |||||| || |
Sbjct 273 GAAGTGGGGTTTCTTCCAAGTGATTAACCATGGAGTTTCGC-TCGATC-TTCTTG-AGAA 329
Query 331 GATTAAAGATGGGGTTCGTAG-GTTTCACGAGGAAGAAGATCCTGAGGTCAAGAAATCAT 389
||| |||||||| |||||| | ||||| || | || ||||| || | |||| ||
Sbjct 330 GATGAAAGATGGAGTTCGT-GACTTTCATGA-G--CAACCCCCTGAAGTGAGGAAAGAAT 385
Query 390 ACTACTCG-CTTGATTTCACCAAGAACAAATT-TGCATACAGTAGTAATTTCGATCTATA 447
|| | | | ||||||| | |||| | || || || | ||||| |||||||| ||
Sbjct 386 TGTA-TAGCCGCGATTTCAAC-AGAA-AGTTTATGTATTTA--AGTAACTTCGATCTCTA 440
Query 448 TAGTTCTTCGCCGTCT-CTTACTTGGAGAGATTCTA-TCTCTTGTTACATGGCTCCTGAT 505
||| | || | | || | | ||||||||| | | ||| ||||||||||||||| |||
Sbjct 441 CAGTGC-TC-CAG-CTGC-AAATTGGAGAGACAC-ATTCTATTGTTACATGGCTCCAGAT 495
Query 506 CCTCCAACTCCTGAGGAGCTCCCTGAGACTTGCAGGGATGCTATGATTGAATACTCAAAG 565
||||||| || ||||| || || |||| ||| ||||||| |||||| ||||||||||||
Sbjct 496 CCTCCAAAACCAGAGGATCTGCCAGAGATTTGTAGGGATGTTATGATGGAATACTCAAAG 555
Query 566 CATGT-ACTGAGCTTAGGTG-ATTTGCTCTTTGAGCTTCTCTCAGAAGCACTAGGTTTGA 623
|| || | ||| || |||| |||| |||||||||||| | |||||||| ||||| |||
Sbjct 556 CAAGTGA-TGATTTTGGGTGAATTT-CTCTTTGAGCTTTTGTCAGAAGCTCTAGGGCTGA 613
Query 624 AATCTGAGAT--CCTTAA-GAGCATGGATTGCTTGAAGAGTTTGCTTATGATCTGCCATT 680
| || | || ||| || || |||||||||| | ||| |||||| ||| | |||||||
Sbjct 614 ACCCT-A-ATCACCTCAAGGA-CATGGATTGCCTAAAGGGTTTGCGCATGCTTTGCCATT 670
Query 681 A-TTATCCACCTTGTCCACAACCTGACCTAACTTTAGGAATAAGTAAACACTCAGACAAC 739
| || ||||| |||||| | |||||||||||||| || | |||| | ||||| |||| |
Sbjct 671 ACTT-CCCACCGTGTCCAGAGCCTGACCTAACTTTTGGCACAAGTCAGCACTCCGACAGC 729
Query 740 TCTTTCCTCA-CAGTTCTTCTTCAAGA-CAACATTGGTGGTCTTCAAATTCTTCATCAAG 797
||||| || | || | || |||| ||| | | || | || ||||| |||||| | |||
Sbjct 730 TCTTTTCTTACCA-TCCTCCTTCCAGATC-AGATCGAAGGGCTTCAGGTTCTTCGTGAAG 787
Query 798 ACT-CTTGGGTCGATG-TCTCTCCTCTTCCTGGAGCTCTGGT-AGTCAACGTCGGAGAT- 853
| | ||| |||||| || ||| | |||| || ||||| | | ||||| ||||||||
Sbjct 788 GGTAC-TGGTTCGATGTTC-CTCATGTTCCAGGCGCTCTCATCA-TCAACATCGGAGATC 844
Query 854 TTCTTGCAGCTGATAACCAACGATAAGTTTATAAGTGTAGAGCATAGGGTACTAGCGAAT 913
|| || ||||| ||||| ||||| || || || ||| | | |||| | ||| | ||| |
Sbjct 845 TT-TTACAGCTTATAACAAACGACAAATTCATCAGTTTGGGGCATCGAGTATTGGCG-A- 901
Query 914 ACACGAGGCC-C---A-C-GGA-TTTCTGTAGCGA-GCTTT-TTCA--GCTCAAGT-ATA 961
||| || ||| | | | || | ||||| || | | ||| |||| | || || | |
Sbjct 902 ACA-GA-GCCACAAGAGCTCGAGTCTCTGTCGC-ATG-TTTCTTCACCACCCACGTAAAA 957
Query 962 CGTGAGAATTCAACAGTTTATGGACCGATGAAAGAGCTTGTGTCTGAAGAAAACCCTCCA 1021
| ||| | | ||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct 958 C---CCAATCCTAGAGTATATGGACCCATTAAAGAGCTTGTGTCTGAAGAAAACCCTCCA 1014
Query 1022 AAATACAGAGACACAACC 1039
|| |||||||| || |||
Sbjct 1015 AAGTACAGAGAGACCACC 1032
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51580306701
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5