BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59540.1
Length=1329
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496088 jgi|Araly1|496088|fgenesh2_kg.8__1904__AT5G59540.1 1794 0.0
Ahg917696 jgi|Araly1|917696|Al_scaffold_0008_2447 1266 0.0
Ahg470412 jgi|Araly1|470412|fgenesh2_kg.1__366__AT1G04350.1 771 0.0
Ahg470414 jgi|Araly1|470414|fgenesh2_kg.1__368__AT1G04380.1 721 0.0
Ahg470684 jgi|Araly1|470684|fgenesh2_kg.1__638__AT1G06650.2 239 4e-62
Ahg910348 jgi|Araly1|910348|Al_scaffold_0001_602 215 8e-55
> Ahg496088 jgi|Araly1|496088|fgenesh2_kg.8__1904__AT5G59540.1
Length=1223
Score = 1794 bits (971), Expect = 0.0
Identities = 1124/1197 (94%), Gaps = 14/1197 (1%)
Strand=Plus/Plus
Query 17 GATGACCAAAAACTCTATCGAATTCGATCCTTACATCGAGCGTAAAGCTTTCGACGAAAC 76
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1 GATGACCAAAAACTCCATCGAATTCCATCCTTACATCGAGCGTAAAGCTTTCGACGAGAC 60
Query 77 AAAACAAGGTGTGAAAGGCCTCGTCGACGCTAAAATCACTGAAGTTCCTCGTATCTTCCA 136
|||||||||||| ||||||||||| ||||||||||||||| |||| || |||||||||||
Sbjct 61 AAAACAAGGTGTAAAAGGCCTCGTGGACGCTAAAATCACTCAAGTCCCACGTATCTTCCA 120
Query 137 CCACCGTCAAGATATCTTAACCAACAAGAAACCTTCTGCTTC-G-GTATCAGACCTAGAG 194
||||| |||||||||||||||| |||||||||| |||| || | || ||||||||||||
Sbjct 121 CCACCCTCAAGATATCTTAACCGACAAGAAACCCTCTG--TCTGTGTTTCAGACCTAGAG 178
Query 195 ATCCCTATCATCGACTTTGCAAGCGTCCACGCGGACACAGCCTCACGTGAAGCCATCGTA 254
|||||||||||||| |||||||||||||||| ||||||||| |||||||||||| |||||
Sbjct 179 ATCCCTATCATCGATTTTGCAAGCGTCCACGTGGACACAGCGTCACGTGAAGCCGTCGTA 238
Query 255 GAGAAAGTCAAATATGCGGTGGAGAATTGGGGATTCTTCCAGGTTATCAATCATAGTATT 314
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 239 GAGAAAGTCAAATATGCGGTGGAGAATTGGGGATTCTTCCAGGTGATCAATCATGGTATT 298
Query 315 CCTTTAAACGTTCTTGAAGAGATTAAAGATGGGGTTCGTAGGTTTCACGAGGAAGATCCT 374
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 299 CCTTTAAACGTTCTTGAAGAGATTAAAGATGCAGTTCGTAGGTTTCATGAGGAAGATCCT 358
Query 375 GAGGTCAAGAAATCATTCTTCTCGCGTGATGCCGGCAACAAAAAATTTGTATACAACAGT 434
||||||||||||| || |||||||||||||| || ||| ||||||||||| || ||||||
Sbjct 359 GAGGTCAAGAAATTATACTTCTCGCGTGATGACGCCAATAAAAAATTTGTGTATAACAGT 418
Query 435 AACTTCGATCTATACAGTTCTTCGCCGTCTGTTAATTGGAGAGATTCTTTCTCTTGTTAC 494
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 AACTTTGATCTATACGGTTCTTCGCCGTCTGTTAATTGGAGAGATTCTTTCTCTTGTTAC 478
Query 495 ATAGCTCCAGATCCTCCAGCTCCTGAGGAGATCCCTGAGACTTGCAGGGATGCTATGTTT 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 ATAGCTCCAGATCCTCCAGCTCCTGAGGAGATCCCTGAGACTTGCAGGGATGCTATGTTT 538
Query 555 GAATACTCAAAGCATGTGTTGAGTTTCGGTGGTTTACTATTTGAGCTTCTCTCAGAAGCA 614
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 539 GAATACTCGAAGCATGTGTTGAGTTTAGGTGGTTTACTATTTGAGCTTCTCTCAGAAGCT 598
Query 615 CTTGGTTTGAAATCTCAGACCCTTGAGAGCATGGATTGCGTGAAGACTTTGCTTATGATC 674
|| ||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 599 CTAGGTTTGAAATCAGAGACCCTTAAGAGCATGGATTGCCTGAAGACTTTGCTTATGATC 658
Query 675 TGCCATTATTACCCACCTTGTCCACAACCTGACCTAACGTTAGGGATAACGAAACACTCA 734
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 659 TGCCATTATTACCCACCTTGTCCACAACCTGACCTAACTTTAGGGATAACTAAACACTCA 718
Query 735 GATAACTCCTTCCTCACGCTTCTTCTCCAAGACAACATTGGTGGTCTTCAAATTCTTCAT 794
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 719 GATAACTCCTTCCTCACGCTTCTTCTCCAAGACAACATTGGTGGTCTTCAAATTATTCAT 778
Query 795 CAAGACTCTTGGGTTGATGTCTCTCCTATCCATGGAGCTCTTGTCGTCAACATTGGAGAT 854
|||||||||||||| |||||||||| | ||||||||||||| ||||||||||||||||||
Sbjct 779 CAAGACTCTTGGGTCGATGTCTCTCATCTCCATGGAGCTCTCGTCGTCAACATTGGAGAT 838
Query 855 TTTTTGCAGCTGATAACGAACGATAAGTTTGTAAGTGTGGAGCATAGAGTGCTTGCAAAT 914
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 839 TTCTTGCAGCTGATAACGAACGATAAGTTTGTAAGTGTGGAGCATAGGGTGCTTGCAAAT 898
Query 915 AGACAAGGACCAAGGATTTCAGTAGCTAGCTTTTTCAGCTCAAGTATGCGTCCAAATTCC 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 AGACAAGGACCAAGGATTTCAGTAGCTAGCTTTTTCAGCTCAAGTATGCGTCCAAATTCC 958
Query 975 AGAGTTTACGGACCGATGAAAGAGCTTGTGTCTGAAGAAAACCCTCCAAAATACAGAGAC 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AGAGTTTACGGACCGATGAAAGAGCTTGTGTCTGAAGAAAACCCTCCAAAATACAGAGAC 1018
Query 1035 ATAACCATAAAAGAGTATTCAAAAATATTTTTTGAGAAAGGTCTCGATGGAACGTCGCAT 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1019 ATAACCATAAAAGAGTATTCAAAAATATTTTTTGAGAAAGGTCTCGATGGAACATCGCAT 1078
Query 1095 CTCTCGAATATCAGGATATGAAAAAC------GAAAA----CGACAGAAATTTCTTAATG 1144
|| ||| |||| ||||||||||||| ||||| || |||| ||||||||||
Sbjct 1079 CTATCGCATATTAGGATATGAAAAAAAAAAATGAAAAAAAACGCCAGATTTTTCTTAATG 1138
Query 1145 AGTTTCTTTGCATCAATTATACTGTTTGTTTATGTCTCTTCAATAATCAAACCAATG 1201
||||| ||||||||||||||||||||||||| || |||| |||||||||||||||||
Sbjct 1139 AGTTTATTTGCATCAATTATACTGTTTGTTTCTGGCTCTGCAATAATCAAACCAATG 1195
Score = 52.8 bits (28), Expect = 6e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 1293 TATCACTTGTAAAATGTTATCAAGTGAT 1320
||||||||||||||||||||||||||||
Sbjct 1196 TATCACTTGTAAAATGTTATCAAGTGAT 1223
> Ahg917696 jgi|Araly1|917696|Al_scaffold_0008_2447
Length=1095
Score = 1266 bits (685), Expect = 0.0
Identities = 971/1108 (88%), Gaps = 23/1108 (2%)
Strand=Plus/Plus
Query 18 ATGACCAAAAACTCTATCGAATTCGATCCTTACATCGAGCGTAAAGCTTTCGACGAAACA 77
||| |||||||||||| |||| |||||| ||||| |||||| ||||| |||||||| |||
Sbjct 1 ATGGCCAAAAACTCTAACGAAGTCGATCGTTACACCGAGCGAAAAGCATTCGACGAGACA 60
Query 78 AAACAAGGTGTGAAAGGCCTCGTCGACGCTAAAATCACTGAAGTTCCTCGTATCTTCCAC 137
||| |||||| ||||| ||| |||| ||||| ||||| ||| | ||||| |||||||||
Sbjct 61 AAAGTAGGTGTAAAAGGACTCATCGATGCTAAGATCACCGAAATCCCTCGAATCTTCCAC 120
Query 138 CACCGTCAAGATATCTTAACCA-ACAAGAAACCTTCTGCTTCGGTATCAGACCTAGAGAT 196
|| |||||||| ||| |||| |||||||||| || | | || ||||||||||||||
Sbjct 121 GTCCCTCAAGATACCTT-ACCAGACAAGAAACC--CT-C-T--GTTTCAGACCTAGAGAT 173
Query 197 CCCTATCATCGACTTTGCAAGCGTCCACGCGGAC-ACAGCCTCACGTGAAGCCA-TCGTA 254
||||| |||||||||||||||||| ||| |||| | || |||||||||| | |||||
Sbjct 174 CCCTACCATCGACTTTGCAAGCGTTTACGTGGACGA-AGAGTCACGTGAAG-AAGTCGTA 231
Query 255 GAGAAAGTCAAATATGCGGTGGAGAATTGGGGATTCTTCCAGGTTATCAATCATAGTATT 314
|||||||||| ||||||||||||||||||||| ||||||||||| ||||||||| || ||
Sbjct 232 GAGAAAGTCAGATATGCGGTGGAGAATTGGGGGTTCTTCCAGGTGATCAATCATGGTGTT 291
Query 315 CCTTTAAACGTTCTTGAAGAGATTAAAGATGGGGTTCGTAGGTTTCACGA-G--GAAGAT 371
||||||||||||||||| ||||||||||||||| |||||| |||||||| | ||||||
Sbjct 292 CCTTTAAACGTTCTTGAGGAGATTAAAGATGGGACTCGTAGATTTCACGAGGAAGAAGAT 351
Query 372 CCTGAGGTCAAGAAATCATTCTTCTCGCGTGATGCCGGCAAC-AAAAAATTTGTATACAA 430
||||||||||||||||||| || ||||| |||| | | || || ||||||| ||||
Sbjct 352 CCTGAGGTCAAGAAATCATACTACTCGCTTGATTTC-ACCACGAACAAATTTGCCTACAG 410
Query 431 CAGTAACTTCGATCTATACAGTTCTTCGCCGTCTGTTAATTGGAGAGATTCTTTCTCTTG 490
||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 411 TAGTAATTTCGATCTATATAGTTCTTCGCCGTCTGTTAATTGGAGAGATTCTATCTCTTG 470
Query 491 TTACATAGCTCCAGATCCTCCAGCTCCTGAGGAGA-TCCCTGAGACTTGCAGGGATGCTA 549
|||||| ||||| ||||||||| |||||||||| | |||| |||||||||||||||||||
Sbjct 471 TTACATGGCTCCTGATCCTCCAACTCCTGAGGA-ACTCCCAGAGACTTGCAGGGATGCTA 529
Query 550 TGTTTGAATACTCAAAGCATGTGTTGAGTTTCGGTGGTTTACTATTTGAGCTTCTCTCAG 609
|| |||||||||||||||||||||||||||| |||| ||| || |||| |||||||||||
Sbjct 530 TGATTGAATACTCAAAGCATGTGTTGAGTTTAGGTGATTTGCTCTTTGGGCTTCTCTCAG 589
Query 610 AAGCACTTGGTTTGAAATCTCAGACCCTTGAGAGCATGGATTGCGTGAAGACTTTGCTTA 669
||||||| |||||||||||| ||| |||| ||||||||| |||| |||||| ||||||||
Sbjct 590 AAGCACTAGGTTTGAAATCTGAGATCCTTAAGAGCATGGGTTGCTTGAAGAGTTTGCTTA 649
Query 670 TGATCTGCCATTATTACCCACCTTGTCCACAACCTGACCTAACGTTAGGGATAACGAAAC 729
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 650 TGATCTGTCATTATTACCCACCTTGTCCACAACCTGACCTAACTTTAGGGATAACTAAAC 709
Query 730 ACTCAGATAACTCCTTCCTCACGCTTCTTCTCCAAGACAACATTGGTGGTCTTCAAATTC 789
| ||||| ||||| ||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 710 ATTCAGACAACTCTTTCCTCACGGTTCTTCTTCAAGACAACATTGGTGGTCTTCAAATTC 769
Query 790 TTCATCAAGACTCTTGGGTTGATGTCTCTCCTAT-CCATGGAGCTCTTGTCGTCAACATT 848
|||||||||||||||||||||||||||||||| | || ||||||||| || ||||||||
Sbjct 770 TTCATCAAGACTCTTGGGTTGATGTCTCTCCTCTTCC-TGGAGCTCTGGTAGTCAACATC 828
Query 849 GGAGATTTTTTGCAGCTGATAACGAACGATAAGTTTGTAAGTGTGGAGCATAGAGTGCTT 908
|||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 829 GGAGATTTCTTGCAGCTGATAACCAACGATAAGTTTGTAAGTGTGGAGCATAGGGTGCTT 888
Query 909 GCAAATAGACAAGGACCAAGGATTTCAGTAGCTAGCTTTTTCAGCTCAAGTATGCGTCCA 968
|| |||| || ||||||||||||||||||||| |||||||||||||||||||| ||| |
Sbjct 889 GCGAATACACGAGGACCAAGGATTTCAGTAGCGAGCTTTTTCAGCTCAAGTATACGTG-A 947
Query 969 -AATTCCAGAGTTTACGGACCGATGAAAGAGCTTGTGTCTGAAGAAAACCCTCCAAAATA 1027
||||| | |||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 948 GAATTCAACAGTTTATGGACCAATGAAAGAGCTTGTGTCTGAAGAAAACCCTCCAAAATA 1007
Query 1028 CAGAGACATAACCATAAAAGAGTATTCAAAAATATTTTTTGAGAAAGGTCTCGATGGAAC 1087
|||||| | ||| ||| ||| || ||| || || ||| |||||||||| ||||||||
Sbjct 1008 CAGAGATACAACTTTAAGAGAATACTCAGAAGGATACTTTAAGAAAGGTCTTGATGGAAC 1067
Query 1088 GTCGCATCTCTCGAATATCAGGATATGA 1115
|||||||| |||||| |||||||||||
Sbjct 1068 ATCGCATCTGTCGAATTTCAGGATATGA 1095
> Ahg470412 jgi|Araly1|470412|fgenesh2_kg.1__366__AT1G04350.1
Length=1324
Score = 771 bits (417), Expect = 0.0
Identities = 885/1105 (80%), Gaps = 55/1105 (5%)
Strand=Plus/Plus
Query 46 CTTACA-TCGAGCGTAAAGCTTTCGACGAAAC-AAAACAAGGTGTGAAAGGCCTCGTCGA 103
|||||| | ||||| |||||||||||||| || ||||| |||||||||||| || || ||
Sbjct 114 CTTACAGT-GAGCGCAAAGCTTTCGACGAGACAAAAAC-AGGTGTGAAAGGTCTTGTTGA 171
Query 104 CGCTAAAATCACTGAAG-TTCCTCGTATCTTCCACCACCGTCAA-G-AT-ATCTTAACCA 159
||| | ||||||| || ||||||| ||||||| | || |||| | | ||||| ||
Sbjct 172 TGCTCACATCACTG-AGATTCCTCGAATCTTCCGTCTCCCTCAAGGTGTCTTCTTATCCG 230
Query 160 ACAAGAAACCTTCTGCT-TCGGTATCAGACCTAGAGATCCCTATCATCGACTTTGCAAGC 218
|||||||| |||||| | || | || || | | |||||||||||||||||||| |||
Sbjct 231 ACAAGAAAACTTCTG-TCTCTGCCTCGGATTTTGCGATCCCTATCATCGACTTTG-AAG- 287
Query 219 GTCCACGCGGACACAGCCTCACGTGAAGCCATCGT-AGAGAAAG-TCAAATATGCGGTGG 276
| | | | ||| | ||| ||||||| ||||| | || ||| ||||| | || ||
Sbjct 288 G--C-CTC---CAC-GTCTCGCGTGAAGATATCGTCA-AG-AAGATCAAAGA--CGCTGC 336
Query 277 A--GAATTGGGGATTCTTCCAGGTTATCAATCATAGTATTCCTTTAAACGTTCTTGAAGA 334
| |||||||| || |||||||| || |||||| || ||||||||||||||||||||||
Sbjct 337 ATCCAATTGGGGGTTTTTCCAGGTGATTAATCATGGTGTTCCTTTAAACGTTCTTGAAGA 396
Query 335 GATTAAAGATGGGGTTCGTAGGTTTCACGAGGAAGATCCTGAGGTCAAGA-AATCATT-C 392
|||| |||| || |||||||||||||| || |||||||||||||| |||| || | || |
Sbjct 397 GATTCAAGAAGGAGTTCGTAGGTTTCATGAAGAAGATCCTGAGGTTAAGATAA-C-TTAC 454
Query 393 TTCTCGCGTGATGCCGGCAACAAAAAATTTGTATACAACAGTAACTTCGATCTATACAGT 452
||| | ||||||||| || |||| |||||| ||||| |||||||||||||| |||||
Sbjct 455 TTCACCCGTGATGCC-GC--TAAAAGATTTGTCTACAATAGTAACTTCGATCTCTACAGG 511
Query 453 TCTTCGCCGTCTGTTAATTGGAGAGATTCTTTCTCTTGTTACATAGCTCCAGATCCTCC- 511
||||| | | |||||| |||||||| || ||| |||||||||| ||||| ||||||||
Sbjct 512 TCTTCTTCATGTGTTAACTGGAGAGACTCGTTCGCTTGTTACATGGCTCCTGATCCTCCA 571
Query 512 AGCTCCTGAGGAGA-TCCCTGAGACTTGCAGGGATGCTATGTTTGAATACTCAAAGCATG 570
| | |||||||| | |||| | | ||||||||||||||||||| |||||||||||||||
Sbjct 572 AAC-CCTGAGGA-ACTCCCAGTGGCTTGCAGGGATGCTATGTTCGAATACTCAAAGCATA 629
Query 571 TGTTGAGTTTCGGTGGTTTACTATTTGAGCTTCTCTCAGAAGCACTTGGTTTGAAATCTC 630
|| |||| || |||| ||| || |||||||||||||||||||| |||||||||| ||||
Sbjct 630 TGATGAGATTAGGTGATTTGCTCTTTGAGCTTCTCTCAGAAGCTCTTGGTTTGAGATCTG 689
Query 631 AGACCCTTGAGAGCATGGATTGCGTGAAGACTTTGCTTATGATCTGCCATTATTACCCAC 690
| | ||| |||||||||||||| ||||| ||||||| || ||||||||||||| || |
Sbjct 690 ATAAGCTTAAGAGCATGGATTGCATGAAGGGTTTGCTTTTGCTCTGCCATTATTATCCTC 749
Query 691 CTTGTCCACAACCTGACCTAACGT-TAGGGATAACGAAACACTCAGATAACTCCTTCCTC 749
| |||||||||||||| ||||| | | || | || || || ||||| || |||||||||
Sbjct 750 CATGTCCACAACCTGATCTAAC-TATCGGCACAAATAATCATTCAGACAATTCCTTCCTC 808
Query 750 ACGCTTCTTCTCCAAGA-CAACATTGGTGGTCTTCAAATTCTTCATCAAGACTCTTGGGT 808
|| ||||||| || || ||| || |||||||||||||||| |||||| |||| ||||||
Sbjct 809 ACAATTCTTCTTCAGGACCAA-ATCGGTGGTCTTCAAATTCATCATCAGGACTGTTGGGT 867
Query 809 TGATGTCTCTCCTA-TCCATGGAGCTCTTGTCGTCAACATTGGAGATTTTTTGCAGCTGA 867
||||||||||||| |||| || ||||| ||| ||||||| |||||||| |||||||| |
Sbjct 868 CGATGTCTCTCCTATTCCA-GGGGCTCTAGTCATCAACATGGGAGATTTCTTGCAGCTAA 926
Query 868 TAACGAACGATAAGTTTGTAAGTGTGGAGCATAGAGTGCTTGC-AA-ATAG-A-CAAGGA 923
||||||| || ||||| |||||||||||||||| ||||| || || | | | | | |
Sbjct 927 TAACGAATGACAAGTTCATAAGTGTGGAGCATAGGGTGCTAGCGAACAGGGCAGCTA-CA 985
Query 924 CCAAGGATTTCAGTAGCTAGCTTTTTCAGCTCAAGTATGCGTCCAAATTCCAGAGTTTAC 983
|| ||||| |||||||| |||||||||||| ||||||||| ||| ||||| | ||||||
Sbjct 986 CCGAGGATATCAGTAGCGAGCTTTTTCAGCACAAGTATGCTTCCGAATTCAACTGTTTAC 1045
Query 984 GGACCGATGAAAGAGCTTGTGTCTGAAGAAAACCCTCCAAAATACAGAGACATA-ACCAT 1042
||||| || || ||| || | |||||||||||||||||||||||||||| ||| || |
Sbjct 1046 GGACCAATCAAGGAGATTCTCTCTGAAGAAAACCCTCCAAAATACAGAGTCATCGACT-T 1104
Query 1043 AAAAGAGTATTCAAAAATATTTTTTGAGAAAGGTCTCGATGGAACGTCGCATCTCTCGAA 1102
|||||| || || | | | ||||||| ||||||||||| ||| |||| ||| |
Sbjct 1105 AAAAGAATACACAGAGGGGTACTACAAGAAAGGCCTCGATGGAACATCGTATCTGTCGCA 1164
Query 1103 T-ATCAGGATATGAAAAACGAAAAC 1126
| | || ||||||||||| |||||
Sbjct 1165 TTA-CAAGATATGAAAAAA-AAAAC 1187
> Ahg470414 jgi|Araly1|470414|fgenesh2_kg.1__368__AT1G04380.1
Length=1241
Score = 721 bits (390), Expect = 0.0
Identities = 729/891 (82%), Gaps = 30/891 (3%)
Strand=Plus/Plus
Query 237 TCACGTGAAGCCATCGTAGAGAAAG-TCAAATATGCGGTGGAGAATTGGGGATTCTTCCA 295
|||||||||||| | || ||| ||| ||||| | || | ||||| |||||| |||||||
Sbjct 189 TCACGTGAAGCCGTTGTGGAG-AAGATCAAAGACGCTGCAGAGAAGTGGGGAATCTTCCA 247
Query 296 GGTTATCAATCATAGTATTCCTTTAAACGTTCTTGAAGAGATT-AAAGATGGGGTTCG-T 353
||| ||||| ||| || |||||| || ||||||||||||||| ||| |||| ||| | |
Sbjct 248 GGTGATCAACCATGGTGTTCCTTCAAGTGTTCTTGAAGAGATTCAAA-ATGGAGTT-GTT 305
Query 354 AGGTTTCACGAGGAAGATCCTGAGGTCAAGAAATCATT-CTTCTCGCGTGATGCCGGCAA 412
|||||||| ||||||||||||||||| |||||||| || |||||||| | || | | |
Sbjct 306 AGGTTTCATGAGGAAGATCCTGAGGTTAAGAAATC-TTACTTCTCGC-T--TGACTTC-A 360
Query 413 CAAAAA-ATTTGTATACAACAGTAACTTCGATCTATACAGTTCTTCGCCGTCTGTTAATT 471
|||||| ||| | ||| ||| ||| ||||| || |||||||| | | | ||| ||| |
Sbjct 361 CAAAAACTTTTATCTACCACAATAATTTCGAACTGTACAGTTCGT--CTG-CTGGTAACT 417
Query 472 GGAGAGATTCTTTCTCTTGTTACATAGCTCCAGATCCTCC-AGCTCCTGAGGAGATCCCT 530
||||||| |||||| |||||||||| ||||| |||||||| | | |||||||| ||||
Sbjct 418 GGAGAGACTCTTTCGCTTGTTACATGGCTCCTGATCCTCCAAAC-CCTGAGGATCTCCCA 476
Query 531 GAGACTTGCAGGGATGCTATGTTTGAATACTCAAAGCATGTGTTGAGTTTCGGTGGTTTA 590
| | ||||||||||||||||| | | |||||||||||||||| ||| || ||||||||
Sbjct 477 GTGGCTTGCAGGGATGCTATGATCGGATACTCAAAGCATGTGATGAACTTAGGTGGTTTG 536
Query 591 CTATTTGAGCTTCTCTCAGAAGCACTTGGTTTGAAATCTCAGACCCTTGAGAGCATGGAT 650
|| ||||| |||||||||||||| |||||||||| ||| || |||| |||| |||| |
Sbjct 537 CTCTTTGAACTTCTCTCAGAAGCTCTTGGTTTGAGCTCTGAGGCCCTAAAGAGTATGGGT 596
Query 651 TGCGTGAAGACTTTGCTTATGATCTGCCATTATTACCCACCTTGTCCACAACCTGACCTA 710
||| ||||| ||||| |||||||||||||||||||||||| |||||| |||||||||||
Sbjct 597 TGCATGAAGGGTTTGCATATGATCTGCCATTATTACCCACCATGTCCAGAACCTGACCTA 656
Query 711 ACGTTAGGGATAACG-AAACACTCAGATAACTCCTTCCTCACGC-TTCTTCTCCAAGACA 768
|| ||||| | || | | ||||| || ||| |||| |||| | ||||||| || ||||
Sbjct 657 ACTTTAGGCACAA-GTCAGCACTCCGACAACACCTTTATCAC-CATTCTTCTTCAGGACA 714
Query 769 ACATTGGTGGTCTTCAAATTCTTCATCAAGACTCTTGGGTTGATGTCTCTCCT-ATCCAT 827
||||||||||||||||||||||||||||||||| |||||| |||||||| ||| |||
Sbjct 715 ACATTGGTGGTCTTCAAATTCTTCATCAAGACTGTTGGGTCGATGTCTCGCCTCTTCC-C 773
Query 828 GGAGCTCTTGTCGTCAACATTGGAGATTTTTTGCAGCTGATAACGAACGATAAGTTTGTA 887
|| ||||||||| ||||||| |||||||| ||||||||||| |||||||| ||||| ||
Sbjct 774 GGGGCTCTTGTCATCAACATAGGAGATTTCTTGCAGCTGATGACGAACGACAAGTTCATA 833
Query 888 AGTGTGGAGCATAGAGTGCTTGCAAATAGACAAGGACCAAGGATTTCAGTAGC-TAGCTT 946
|| || || ||||| ||||||||||||| | ||||| ||||||||| | || | ||||
Sbjct 834 AGCGTTGAACATAGGGTGCTTGCAAATAAAGTTGGACCGAGGATTTCAATCGCGT-GCTT 892
Query 947 TTTCAGCTCAAGTATGCGTCCAAATTCCAGAGTTTACGGACCGATGAAAGAGCTTGTGTC 1006
||||||||| |||||| ||||||||||| |||||||||||| || ||||||||| | ||
Sbjct 893 TTTCAGCTCGAGTATGAATCCAAATTCCACAGTTTACGGACCAATCAAAGAGCTTCTCTC 952
Query 1007 TGAAGAAAACCCTCCAAAATACAGAGACATAACCATAAAAGAGTATTCAAAAATATTTTT 1066
||||||||||||||||||||||||| || | || || |||||| ||||| || |
Sbjct 953 TGAAGAAAACCCTCCAAAATACAGAAACTTCACTGTACCAGAGTACTCAAAGGGATACAT 1012
Query 1067 TGAGAAAGGTCTCGATGGAACGTCGCATCTCTCGA-AT-ATCAGGATATGA 1115
|||||||||| | |||||||| |||||||| || | || | ||||||||||
Sbjct 1013 TGAGAAAGGTTTAGATGGAACATCGCATCTGTC-ACATTA-CAGGATATGA 1061
> Ahg470684 jgi|Araly1|470684|fgenesh2_kg.1__638__AT1G06650.2
Length=1339
Score = 239 bits (129), Expect = 4e-62
Identities = 595/810 (73%), Gaps = 71/810 (9%)
Strand=Plus/Plus
Query 276 GAGAATTGGGGATTCTTCCAGGTTATCAATCAT--AGTATTC-CTTTAAACGTTCTTGAA 332
||||| ||||| ||||||||||| ||||| ||| ||| ||| | || | | |||||| |
Sbjct 341 GAGAAGTGGGGTTTCTTCCAGGTGATCAACCATGGAGT-TTCGC-TTGATC-TTCTTG-A 396
Query 333 G-AGATTAAAGATGGGGTTCGTAG-GTTTCACGAGGAAGATCCTGAGGTCAAGAAATCAT 390
| |||| |||||||| |||||| | ||||||||| || ||||| || | |||| ||
Sbjct 397 GAAGATGAAAGATGGAGTTCGT-GATTTTCACGAGCAATCCCCTGAAGTGAGGAAAGAAT 455
Query 391 TCTTCTCG-CGTGATGCCGGCAACAAAAAATT-TGTATACAACAGTAACTTCGATCTATA 448
|| | | | || ||| | || | || || ||||| | ||||| |||||||| |
Sbjct 456 TC-TATAGTCGCGATTTCAGC-A-GAAGGTTTCTGTAT-TTA-AGTAATTTCGATCTCTT 510
Query 449 CAGTTCTTCGCCGTCTGTTAATTGGAGAGATTCTTTCTCTTGTTAC-ATAGCTCCAGATC 507
|||||| || | | ||| ||||||||||| |||||||||| ||| || |||||||||
Sbjct 511 CAGTTC-TC-CAG-CTGCAAATTGGAGAGACACTTTCTCTTG-TACTATGGCTCCAGATA 566
Query 508 CTCCAGCTCCTGAGGAGATCCCTGAGACTTGCAGGGATGCTATGTTTGAATACTCAAAGC 567
||||| || |||| | || |||| ||| ||||||| |||| | |||||||||||||
Sbjct 567 CTCCAAAACCACAGGATCTTCCGGAGATTTGTAGGGATGTTATGATGGAATACTCAAAGC 626
Query 568 ATGTGTTGAGTTTCGGT-GGTTTACTATTTGAGCTTCTCTCAGAAGCACTTGGTTTGAAA 626
| ||| ||| ||| ||| ||| || ||||||||| | |||||||| || || ||| ||
Sbjct 627 AAGTGATGATTTTGGGTAAATTT-CTCTTTGAGCTTTTATCAGAAGCTCTAGGGTTGGAA 685
Query 627 TCTCAGA-C-CCTTGA-GAGCATGGATTGCGT-GAAGACTTTGCTTATGATCTGCCATTA 682
|| | | | ||| | || ||| |||||| | ||| |||||| ||| ||| ||||||
Sbjct 686 CCT-A-ATCACCTCAATGA-CATAGATTGC-TCCAAGGGTTTGCTCATGCTCTCCCATTA 741
Query 683 TTACCCACCTTGTCCACAACCTGACCTAACGTTAGGGATAACG-AAACACTCAGATAACT 741
|||||||| |||||| | ||||||||||| ||||| | || | | ||||| || ||||
Sbjct 742 CTACCCACCGTGTCCAGAGCCTGACCTAACTTTAGGCACAA-GTCAGCACTCCGACAACT 800
Query 742 CCTTCCTCA-CGCTTCTTCTCCAAGA-CAACATTGGTGGTCTTCAAATTCTTCATC-AAG 798
| || || | || | ||||||| || | | || | || ||||| ||| || | | |
Sbjct 801 CTTTTCTTACCG-TCCTTCTCCCCGATC-AGATCGAAGGGCTTCAGGTTCGTC-GCGATG 857
Query 799 ACT-CTTGGGTT-GATG-TCTCTCCT-ATCCATGGAGCTCTTGTCGTCAACATTGGAGAT 854
| | | |||| |||| || ||| | ||| || ||||| || ||||||||||||||
Sbjct 858 GGTAC-T-GGTTCGATGTTC-CTCATGTTCC-CGGCGCTCTAATCATCAACATTGGAGAT 913
Query 855 TTTTTGCAGCTGATAACGAACGATAAGTTTGTAAGTGTGGAGCATAGAGTGCTT-GC-AA 912
|||| ||||| ||||| ||||| || || | ||| ||||||||||||| || || ||
Sbjct 914 CTTTTACAGCTTATAACAAACGACAAATTCATCAGTTTGGAGCATAGAGT-ATTGGCGAA 972
Query 913 -ATA--GACAAGGA-C-CAAGGATTTCAGTAGCTA-GCTTT-TTCAGCTCA-AGTATG-C 963
| | ||||| || | | | | | || || || | | ||| || | | || | | | |
Sbjct 973 CAGAGCGACAA-GAGCTCGA-G-TGTCTGTCGC-ATG-TTTCTTTA-C-CACCGGA-GTC 1024
Query 964 -GTCCAAATTCC-AGAGTTTACGGACCGATGAAAGAGCTTGTGTCTGAAGAAAACCCTCC 1021
| || | ||| ||||| ||||||||||| | |||||||||||||||||||||||||||
Sbjct 1025 AGACCGGA-TCCTAGAGTGTACGGACCGATTAGAGAGCTTGTGTCTGAAGAAAACCCTCC 1083
Query 1022 AAAATACAGAGACATAACCATAAAAGAGTA 1051
||| |||||||| | ||||| | ||||||
Sbjct 1084 AAAGTACAGAGAGACCACCATTAGAGAGTA 1113
> Ahg910348 jgi|Araly1|910348|Al_scaffold_0001_602
Length=1107
Score = 215 bits (116), Expect = 8e-55
Identities = 466/628 (74%), Gaps = 52/628 (8%)
Strand=Plus/Plus
Query 432 AGTAACTTCGATCTATACAGTTCTTCGCCGTCTGTTAATTGGAGAGATTCTTTCTCTTGT 491
|||||||||||||| |||||| | || | | ||| ||||||||||| | |||| ||||
Sbjct 424 AGTAACTTCGATCTCTACAGTGC-TC-CAG-CTGCAAATTGGAGAGACACATTCTATTGT 480
Query 492 TACATAGCTCCAGATCCTCCAGCTCCTGAGGAGATCCCTGAGACTTGCAGGGATGCTATG 551
||||| ||||||||||||||| || ||||| | || |||| ||| ||||||| ||||
Sbjct 481 TACATGGCTCCAGATCCTCCAAAACCAGAGGATCTGCCAGAGATTTGTAGGGATGTTATG 540
Query 552 TTTGAATACTCAAAGCATGTGTTGAGTTTCGGTG-GTTTACTATTTGAGCTTCTCTCAGA 610
| |||||||||||||| ||| ||| ||| |||| ||| || ||||||||| | |||||
Sbjct 541 ATGGAATACTCAAAGCAAGTGATGATTTTGGGTGAATTT-CTCTTTGAGCTTTTGTCAGA 599
Query 611 AGCACTTGGTTTGAAATCTCAGA-C-CCTTGA-GAGCATGGATTGCGTGAAGACTTTGCT 667
||| || || |||| || | | | ||| | || |||||||||| | ||| |||||
Sbjct 600 AGCTCTAGGGCTGAACCCT-A-ATCACCTCAAGGA-CATGGATTGCCTAAAGGGTTTGCG 656
Query 668 TATGATCTGCCATTA-TTACCCACCTTGTCCACAACCTGACCTAACGTTAGGGATAACG- 725
||| | |||||||| || |||||| |||||| | ||||||||||| || || | || |
Sbjct 657 CATGCTTTGCCATTACTT-CCCACCGTGTCCAGAGCCTGACCTAACTTTTGGCACAA-GT 714
Query 726 AAACACTCAGATAACTCCTTCCTCACGC-TTCTTC-TCCAAGA-CAACATTGGTGGTCTT 782
| ||||| || | ||| || || || | | || | ||| ||| | | || | || |||
Sbjct 715 CAGCACTCCGACAGCTCTTTTCTTAC-CATCCTCCTTCC-AGATC-AGATCGAAGGGCTT 771
Query 783 CAAATTCTTCATCAAGACT-CTTGGGTT-GATG-TCTCTCCT-ATCCATGGAGCTCTTGT 838
|| |||||| | ||| | | | |||| |||| || ||| | |||| || ||||| |
Sbjct 772 CAGGTTCTTCGTGAAGGGTAC-T-GGTTCGATGTTC-CTCATGTTCCA-GGCGCTCTCAT 827
Query 839 CGTCAACATTGGAGATTTTTTGCAGCTGATAACGAACGATAAGTTTGTAAGTGTGGAGCA 898
| ||||||| |||||| |||| ||||| ||||| ||||| || || | ||| ||| |||
Sbjct 828 CATCAACATCGGAGATCTTTTACAGCTTATAACAAACGACAAATTCATCAGTTTGGGGCA 887
Query 899 TAGAGTGCTT-GC-AA-ATAG--ACAAGGA-C-CAAGGATTTCAGTAGCTA-GCTTT-TT 949
| |||| || || || | || |||| || | | | | | || || || | | ||| ||
Sbjct 888 TCGAGT-ATTGGCGAACAGAGCCACAA-GAGCTCGA-G-TCTCTGTCGC-ATG-TTTCTT 941
Query 950 CA--GCTCAAGT-ATGCGTCCAAATTCC-AGAGTTTACGGACCGATGAAAGAGCTTGTGT 1005
|| | || || | | || || ||| ||||| || ||||| || |||||||||||||
Sbjct 942 CACCACCCACGTAAAAC--CC-AA-TCCTAGAGTATATGGACCCATTAAAGAGCTTGTGT 997
Query 1006 CTGAAGAAAACCCTCCAAAATACAGAGA 1033
||||||||||||||||||| ||||||||
Sbjct 998 CTGAAGAAAACCCTCCAAAGTACAGAGA 1025
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49712283768
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5